mRNA_H-paniculata_contig38845.10138.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig38845.10138.1
Unique NamemRNA_H-paniculata_contig38845.10138.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig38845.10138.1 vs. uniprot
Match: A0A6H5JSF7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF7_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.580e-17
Identity = 39/45 (86.67%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    1 QVGKELFIEATADQLILRTLNDAKSAFAAFYFNDAGGFFESFRQG 135
            QVGKELFIE T DQLILRTLNDAKSAFAAFYF+D+GGFFE+FR+G
Sbjct:   30 QVGKELFIETTGDQLILRTLNDAKSAFAAFYFSDSGGFFETFRRG 74
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BLAST of mRNA_H-paniculata_contig38845.10138.1 vs. uniprot
Match: D8LT46_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT46_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 5.930e-17
Identity = 39/45 (86.67%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    1 QVGKELFIEATADQLILRTLNDAKSAFAAFYFNDAGGFFESFRQG 135
            +VGKELFIE T DQLILRTLNDAKSAFAAFYFND+GGFFE+FR+G
Sbjct:   75 KVGKELFIETTGDQLILRTLNDAKSAFAAFYFNDSGGFFETFRRG 119
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BLAST of mRNA_H-paniculata_contig38845.10138.1 vs. uniprot
Match: A0A835ZGY8_9STRA (Rad9-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGY8_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.130e-8
Identity = 29/45 (64.44%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    1 QVGKELFIEATADQLILRTLNDAKSAFAAFYFNDAGGFFESFRQG 135
            +VGKEL +E T D+LILRT+NDAKSA+AA +FN   GFF+ FR G
Sbjct:   37 RVGKELQLEGTTDKLILRTINDAKSAYAAIFFNS--GFFDFFRSG 79
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig38845.10138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JSF7_9PHAE1.580e-1786.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LT46_ECTSI5.930e-1786.67Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A835ZGY8_9STRA2.130e-864.44Rad9-domain-containing protein n=1 Tax=Tribonema m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig38845contigH-paniculata_contig38845:184..318 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.6
Seed ortholog evalue1e-13
Seed eggNOG ortholog2880.D8LT46
Preferred nameRAD9B
KEGG koko:K10994,ko:K10995
KEGG Pathwayko04218,map04218
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000018,GO:0000075,GO:0000076,GO:0000077,GO:0000228,GO:0000278,GO:0000723,GO:0000785,GO:0000790,GO:0000792,GO:0000793,GO:0000794,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007093,GO:0007346,GO:0008047,GO:0008150,GO:0008152,GO:0008408,GO:0009314,GO:0009628,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010212,GO:0010389,GO:0010562,GO:0010564,GO:0010569,GO:0010604,GO:0010605,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0010948,GO:0010972,GO:0012505,GO:0016020,GO:0016043,GO:0016787,GO:0016788,GO:0017124,GO:0019207,GO:0019209,GO:0019219,GO:0019220,GO:0019222,GO:0019887,GO:0019899,GO:0019900,GO:0019901,GO:0019904,GO:0022402,GO:0023051,GO:0023056,GO:0030234,GO:0030295,GO:0030896,GO:0031090,GO:0031323,GO:0031324,GO:0031325,GO:0031399,GO:0031401,GO:0031570,GO:0031573,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032147,GO:0032200,GO:0032268,GO:0032270,GO:0032991,GO:0033314,GO:0033554,GO:0033674,GO:0034641,GO:0035861,GO:0042325,GO:0042327,GO:0042592,GO:0042826,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044773,GO:0044774,GO:0044818,GO:0045738,GO:0045786,GO:0045859,GO:0045860,GO:0045910,GO:0045930,GO:0045934,GO:0045937,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051276,GO:0051338,GO:0051347,GO:0051716,GO:0051726,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071214,GO:0071478,GO:0071479,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090305,GO:0090734,GO:0098772,GO:0104004,GO:1901360,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902229,GO:1902231,GO:1902531,GO:1902533,GO:1902749,GO:1902750,GO:1903047,GO:1990421,GO:2000042,GO:2000779,GO:2000780,GO:2001020,GO:2001021,GO:2001022,GO:2001233,GO:2001235,GO:2001242,GO:2001244
EggNOG free text desc.intra-S DNA damage checkpoint
EggNOG OGsKOG2810@1,KOG2810@2759
Ec32 ortholog descriptionRad9/Ddc1
Ec32 orthologEc-08_004110.1
EC3.1.11.2
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Exons1
Model size135
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930191.259525-CDS-H-paniculata_contig38845:183..3181622930191.259525-CDS-H-paniculata_contig38845:183..318Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38845 184..318 -
1691481185.0696929-CDS-H-paniculata_contig38845:183..3181691481185.0696929-CDS-H-paniculata_contig38845:183..318Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38845 184..318 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig38845.10138.1prot_H-paniculata_contig38845.10138.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig38845 184..318 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig38845.10138.1

>prot_H-paniculata_contig38845.10138.1 ID=prot_H-paniculata_contig38845.10138.1|Name=mRNA_H-paniculata_contig38845.10138.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=45bp
QVGKELFIEATADQLILRTLNDAKSAFAAFYFNDAGGFFESFRQG
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mRNA from alignment at H-paniculata_contig38845:184..318-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig38845.10138.1 ID=mRNA_H-paniculata_contig38845.10138.1|Name=mRNA_H-paniculata_contig38845.10138.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=135bp|location=Sequence derived from alignment at H-paniculata_contig38845:184..318- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTCGGAAAAGAGCTTTTCATTGAAGCCACGGCTGACCAGCTGATACT
TCGCACGTTGAACGACGCCAAGTCTGCCTTTGCCGCCTTCTATTTCAATG
ACGCTGGGGGCTTCTTCGAGAGCTTCAGGCAAGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig38845:184..318-

>mRNA_H-paniculata_contig38845.10138.1 ID=mRNA_H-paniculata_contig38845.10138.1|Name=mRNA_H-paniculata_contig38845.10138.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at H-paniculata_contig38845:184..318- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTCGGAAAAGAGCTTTTCATTGAAGCCACGGCTGACCAGCTGATACT
TCGCACGTTGAACGACGCCAAGTCTGCCTTTGCCGCCTTCTATTTCAATG
ACGCTGGGGGCTTCTTCGAGAGCTTCAGGCAAGGACAGGTCGGAAAAGAG
CTTTTCATTGAAGCCACGGCTGACCAGCTGATACTTCGCACGTTGAACGA
CGCCAAGTCTGCCTTTGCCGCCTTCTATTTCAATGACGCTGGGGGCTTCT
TCGAGAGCTTCAGGCAAGGA
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