mRNA_H-paniculata_contig3884.10137.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3884.10137.1
Unique NamemRNA_H-paniculata_contig3884.10137.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig3884.10137.1 vs. uniprot
Match: D7FYR4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYR4_ECTSI)

HSP 1 Score: 320 bits (821), Expect = 1.360e-93
Identity = 147/210 (70.00%), Postives = 172/210 (81.90%), Query Frame = 3 
Query: 1641 TNEAWLASLEPLMCGVPPDTHPEDFLHEILRKRGYRTDMVPGTGSAFHRPPSPEQVAAYDKAILRAVLDEDESTLESMRSSGTRMDACNRFGDTVLHMACRRGRVRSLRYLLRECGGRGLEFTDDFGRTVMHDACWTSTPRFDVASMLLARDTRLLRILDKRGSSPLQYVPRAQWAQWCAFFESRKEVYWPPLPPGQEDVAGIIPLDTDV 2270
            TN+ W+A + PL+  +P  THPEDFLH++LR+RGY T+MV    + +HRPP P+QVAAYDKAILRAVLDEDE+ LE MR++G RMDACNRFGD++LHMACRRGR  +LR+LLR  G  G+  +DDFGRTVMHDACWTS+PRFDVAS +L  DTRLLR LD RGSSPLQYVP  QW  WCAFFESRKEVYWP LPPG EDVAGIIP+  +V
Sbjct:  329 TNDEWVARISPLVPSIPEGTHPEDFLHDLLRERGYTTEMVAMKETVYHRPPEPDQVAAYDKAILRAVLDEDEAALERMRAAGRRMDACNRFGDSILHMACRRGRAAALRFLLRAAGSAGVVSSDDFGRTVMHDACWTSSPRFDVASAVLDADTRLLRTLDSRGSSPLQYVPEDQWPLWCAFFESRKEVYWPKLPPGAEDVAGIIPVTEEV 538
[Close]
BLAST of mRNA_H-paniculata_contig3884.10137.1 vs. uniprot
Match: A0A6H5JRJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ3_9PHAE)

HSP 1 Score: 318 bits (816), Expect = 6.890e-93
Identity = 147/210 (70.00%), Postives = 170/210 (80.95%), Query Frame = 3 
Query: 1641 TNEAWLASLEPLMCGVPPDTHPEDFLHEILRKRGYRTDMVPGTGSAFHRPPSPEQVAAYDKAILRAVLDEDESTLESMRSSGTRMDACNRFGDTVLHMACRRGRVRSLRYLLRECGGRGLEFTDDFGRTVMHDACWTSTPRFDVASMLLARDTRLLRILDKRGSSPLQYVPRAQWAQWCAFFESRKEVYWPPLPPGQEDVAGIIPLDTDV 2270
            TN+ W+A + PL+  +P  THPEDFLH +LR+RGY T+MV    + +HRPP P+QVAAYDKAILRAVLDEDE+ LE MR +G RMDACNRFGD++LHMACRRGR  +LR+LLR  G  G+  +DDFGRTVMHDACWTS+PRFDVAS +L  DTRLLR LD RGSSPLQYVP  QW  WCAFFESRKEVYWP LPPG EDVAGIIP+  +V
Sbjct:  329 TNDEWMARISPLVPSIPEGTHPEDFLHALLRERGYTTEMVAMKETVYHRPPEPDQVAAYDKAILRAVLDEDEAALERMRVAGRRMDACNRFGDSILHMACRRGRAAALRFLLRAAGSAGVVSSDDFGRTVMHDACWTSSPRFDVASAVLDADTRLLRTLDSRGSSPLQYVPEDQWPLWCAFFESRKEVYWPKLPPGAEDVAGIIPVTEEV 538
[Close]
BLAST of mRNA_H-paniculata_contig3884.10137.1 vs. uniprot
Match: A0A836C8T3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8T3_9STRA)

HSP 1 Score: 183 bits (464), Expect = 1.690e-49
Identity = 89/171 (52.05%), Postives = 110/171 (64.33%), Query Frame = 3 
Query: 1701 HPEDFLHEILRKRGYRTDMVPGTGSAFHRPPSPEQVAAYDKAILRAVLDEDESTLESMRSSGTRMDACNRFGDTVLHMACRRGRVRSLRYLLRECGGRGLEFTDDFGRTVMHDACWTSTPRFDVASMLLARDTRLLRILDKRGSSPLQYVPRAQWAQWCAFFESRKEVYWP 2213
            HPE  LH IL++RGY T   P   + FHRPP P QV +YD A++ AV   D + L +MR++G  M ACNRFG++VLH A R G V  + +LL      G    DD GRT +H A WT  PRFDVA++LL  D RLLR LDKRG+SPLQYV    W  WC FF ++K +YWP
Sbjct:    2 HPETVLHGILQERGYSTQTAPTLETPFHRPPQPHQVESYDNALVGAVRGGDLAALRAMRAAGHTMTACNRFGESVLHTAVRHGSVDVVAFLLESGAHAGT--CDDCGRTALHFALWTPAPRFDVATLLLNTDVRLLRCLDKRGASPLQYVRPEHWPLWCRFFHAKKHLYWP 170
[Close]
BLAST of mRNA_H-paniculata_contig3884.10137.1 vs. uniprot
Match: W7TFS2_9STRA (Ankyrin repeat-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFS2_9STRA)

HSP 1 Score: 178 bits (452), Expect = 1.040e-44
Identity = 82/176 (46.59%), Postives = 118/176 (67.05%), Query Frame = 3 
Query: 1695 DTHPEDFLHEILRKRGYRTDMVPGTGSAFHRPPSPEQVAAYDKAILRAVLDEDESTLESMRSSGTRMDACNRFGDTVLHMACRRGRVRSLRYLLRECGGRGLEFTDDFGRTVMHDACWTSTPRFDVASMLLARDTRLLRILDKRGSSPLQYVPRAQWAQWCAFFESRKEVYWPPLP 2222
            +  P+DFL  IL++RGY T  +     AF RPP+ +QV  YD  ++ AV   D  +L  M ++G +MDACNRFG++++H++CRRG+  +LR+LL E GGR +   DD GRT +HDACW   P FD  S ++ +D  L+R++D RG++PL Y+ R  W +W  FF+S+KE YW PLP
Sbjct:  184 EASPQDFLWGILQERGYETSPLLAKTQAFFRPPTAKQVTDYDIPLVTAVRTGDLGSLRDMAAAGRQMDACNRFGESIVHISCRRGQAETLRFLL-ENGGR-VHMCDDLGRTPLHDACWAKVPVFDCVSAIMDQDPSLIRVVDCRGATPLSYIRREHWPEWREFFDSKKEKYWAPLP 357
[Close]
BLAST of mRNA_H-paniculata_contig3884.10137.1 vs. uniprot
Match: A0A7S2DD81_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DD81_9STRA)

HSP 1 Score: 157 bits (398), Expect = 5.570e-39
Identity = 75/168 (44.64%), Postives = 109/168 (64.88%), Query Frame = 3 
Query: 1707 EDFLHEILRKRGYRTDMVPGTGSAFHRPPSPEQVAAYDKAILRAVLDEDESTLESMRSSGTRMDACNRFGDTVLHMACRRGRVRSLRYLLRECGGRGLEFTDDFGRTVMHDACWTSTPRFDVASMLLARDTRLLRILDKRGSSPLQYVPRAQWAQWCAFFESRKEVYW 2210
            ++FL+ IL++RGY T  +P   S +   P+ +QV  YD   + AV   D  T+  M   G  ++ACN+FG++++H+ACRRG  + L  L+    G  L  +DD+GRT MHDACW + P FDV ++LL RD  LLR+LDKRG++PL YV    +A WCAF + +K+V+W
Sbjct:  137 DEFLNVILKERGYETKRMP---SPYVCKPTEKQVHDYDMDFVAAVRASDVKTISKMLDRGHHVNACNKFGESIIHIACRRGNFKVLEQLVSH--GATLSISDDYGRTPMHDACWNAEPCFDVVALLLNRDLELLRVLDKRGATPLSYVRPEHYAIWCAFLDYQKDVWW 299
[Close]
BLAST of mRNA_H-paniculata_contig3884.10137.1 vs. uniprot
Match: A0A7R9ZHX0_9STRA (Hypothetical protein n=6 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZHX0_9STRA)

HSP 1 Score: 166 bits (421), Expect = 5.710e-39
Identity = 78/176 (44.32%), Postives = 109/176 (61.93%), Query Frame = 3 
Query: 1686 VPPDTHPEDFLHEILRKRGYRTDMVPGTGSAFHRPPSPEQVAAYDKAILRAVLDEDESTLESMRSSGTRMDACNRFGDTVLHMACRRGRVRSLRYLLRECGGRGLEFTDDFGRTVMHDACWTSTPRFDVASMLLARDTRLLRILDKRGSSPLQYVPRAQWAQWCAFFESRKEVYWP 2213
            +P    P+ FL  +L+ RGY T       + ++  P+P Q A+Y  A++RAV   D  TL SM +SG   + CN FG++++HM CRRG    LR +L    G  L+ +DDFGRT +HDACWT+ P F+   ++L RD RLLRILD RGSSPL Y  +  W++W  + E +K+ YWP
Sbjct:  388 MPNMVSPQTFLDSLLKTRGYSTASYCSLETGYYSKPTPYQKASYGLALVRAVRSSDGPTLSSMLASGLSRNPCNAFGESLVHMVCRRGDHGLLRVMLDR--GATLQVSDDFGRTPLHDACWTAEPSFECVDLILERDVRLLRILDCRGSSPLSYAKKEHWSEWIEYLERKKDTYWP 561
[Close]
BLAST of mRNA_H-paniculata_contig3884.10137.1 vs. uniprot
Match: A0A7S2RMJ8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RMJ8_9STRA)

HSP 1 Score: 159 bits (403), Expect = 4.450e-38
Identity = 76/178 (42.70%), Postives = 113/178 (63.48%), Query Frame = 3 
Query: 1686 VPPDT-HPEDFLHEILRKRGYRTDMVPGTGSAFHRPPSPEQVAAYDKAILRAVLDEDESTLESMRSSGTRMDACNRFGDTVLHMACRRGRVRSLRYLLRECGGRGLEFTDDFGRTVMHDACWTSTPRFDVASMLLARDTRLLRILDKRGSSPLQYVPRAQWAQWCAFFESRKEVYWPP 2216
            VP D  +P+ F+  +L  RGY T  +P   + F   P+P+Q+  YD A + A+   + + ++S    G  M+ACN++G++V+HMACRRG  + + +++ E GG  LE TDD+GRT +HDACWT  P  DV   LL ++ RLL ++DKRG SPL YV R  +  W +FF+S K+ +W P
Sbjct:  276 VPCDKKNPDQFVDSLLVSRGYETTRIPSLQTEFRTVPTPKQIQDYDLAFVDAIRTSNYAAIQSFYDEGRSMNACNKYGESVMHMACRRGDGKLVSFMV-ELGGL-LEITDDYGRTPLHDACWTPEPCLDVVMFLLNKNLRLLHLIDKRGFSPLAYVRREHYDVWTSFFDSMKDTWWSP 451
[Close]
BLAST of mRNA_H-paniculata_contig3884.10137.1 vs. uniprot
Match: A0A7S0SWK6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SWK6_9STRA)

HSP 1 Score: 150 bits (378), Expect = 3.360e-36
Identity = 72/171 (42.11%), Postives = 105/171 (61.40%), Query Frame = 3 
Query: 1686 VPPDTHPEDFLHEILRKRGYRTDMVPGTGSAFHRPPSPEQVAAYDKAILRAVLDEDESTLESMRSSGTRMDACNRFGDTVLHMACRRGRVRSLRYLLRECGGRGLEFTDDFGRTVMHDACWTSTPRFDVASMLLARDTRLLRILDKRGSSPLQYVPRAQWAQWCAFFESRK 2198
            +PPD     FL  +L  RGY  +++P   S++++ PS +Q+  Y   ++ A+   D S L+++   G  M ACNR+ ++++HMACRR     + +LL+   G     TDDFGRT +HDACW   PRFD+ +MLL  D  LLR+ D RGS PL YV +  WA+WCA+F  +K
Sbjct:  147 IPPD----QFLLRLLSCRGYDYNLIPAVQSSYYKAPSEKQINDYTNDLINAIRYSDLSKLKALVDQGYSMSACNRYSESIVHMACRRSDPAVVDFLLKN--GGDYYITDDFGRTPLHDACWRLDPRFDIVTMLLDNDLTLLRLADIRGSIPLCYVRQEHWAKWCAYFFHQK 311
[Close]
BLAST of mRNA_H-paniculata_contig3884.10137.1 vs. uniprot
Match: A0A7S1BAZ7_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BAZ7_9STRA)

HSP 1 Score: 148 bits (374), Expect = 3.440e-36
Identity = 70/170 (41.18%), Postives = 102/170 (60.00%), Query Frame = 3 
Query: 1704 PEDFLHEILRKRGYRTDMVPGTGSAFHRPPSPEQVAAYDKAILRAVLDEDESTLESMRSSGTRMDACNRFGDTVLHMACRRGRVRSLRYLLRECGGRGLEFTDDFGRTVMHDACWTSTPRFDVASMLLARDTRLLRILDKRGSSPLQYVPRAQWAQWCAFFESRKEVYWP 2213
            P+DFL+++L+ RGY TD      + ++  P+  QVA+Y   I++ V D D   L    S G   + CN+FG++++HM CRR     L  L++   G  ++ +DDFGRT +HDACWTS P F    +LL  D RLL + D+RGS PL Y  R  W +W  F + +K++YWP
Sbjct:   43 PQDFLNKLLKIRGYSTDTYLTLNTGYYCKPTSLQVASYGVGIVQTVRDSDPICLGKFLSKGLSPNPCNKFGESLVHMVCRRREHACLATLIKF--GCSIQVSDDFGRTPLHDACWTSEPCFTTVEILLNIDRRLLSLADRRGSLPLSYARREHWGKWINFLDKKKDLYWP 210
[Close]
BLAST of mRNA_H-paniculata_contig3884.10137.1 vs. uniprot
Match: A0A6U1TFH5_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A6U1TFH5_TRICV)

HSP 1 Score: 150 bits (378), Expect = 1.160e-35
Identity = 80/183 (43.72%), Postives = 104/183 (56.83%), Query Frame = 3 
Query: 1671 PLMCGVPPDTHPEDFLHEILRKRGYRTDMVPGTG--SAFHRPPSPEQVAAYDKAILRAVLDEDESTLESMRSSGTRMDACNRFGDTVLHMACRRGRVRSLRYLLRECGGRGLEFTDDFGRTVMHDACWTSTPRFDVASMLLARDTRLLRILDKRGSSPLQYVPRAQWAQWCAFFESRKEVYWP 2213
            PL   V P+ H    L  ILR  G+ +  VP       F    +PEQ+ AYD  +  AV +ED  +L SM   G  +   NRFG++++HMACRRG V  +R+LLRE G   +   DDFGRT +HDACWT  P FD+  ML+ RD  LL + D+RG +PL YV R  W  W  F E R+ +  P
Sbjct:  182 PLAVQVTPNRH----LQTILRSLGHPSKPVPADSVPPGFFHTYTPEQIDAYDNEVTAAVRNEDVDSLRSMLRRGKPLQCSNRFGESIVHMACRRGSVPVVRFLLREAGV-SVRVRDDFGRTPLHDACWTRDPAFDLVEMLVERDPDLLLVSDRRGHTPLGYVRRDDWGAWVKFLEERRGMLSP 359
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3884.10137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYR4_ECTSI1.360e-9370.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRJ3_9PHAE6.890e-9370.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C8T3_9STRA1.690e-4952.05Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
W7TFS2_9STRA1.040e-4446.59Ankyrin repeat-containing protein n=3 Tax=Monodops... [more]
A0A7S2DD81_9STRA5.570e-3944.64Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7R9ZHX0_9STRA5.710e-3944.32Hypothetical protein n=6 Tax=Pseudictyota dubia Ta... [more]
A0A7S2RMJ8_9STRA4.450e-3842.70Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S0SWK6_9STRA3.360e-3642.11Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A7S1BAZ7_9STRA3.440e-3641.18Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A6U1TFH5_TRICV1.160e-3543.72Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3884contigH-paniculata_contig3884:9196..16100 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score318.9
Seed ortholog evalue5.2e-84
Seed eggNOG ortholog2880.D7FYR4
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.ankyrin repeats
EggNOG OGs2C0FJ@1,2S48R@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-26_004190.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size3643
Cds size1905
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3884.10137.1prot_H-paniculata_contig3884.10137.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3884 12865..14769 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930191.1661766-UTR-H-paniculata_contig3884:9195..95651622930191.1661766-UTR-H-paniculata_contig3884:9195..9565Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3884 9196..9565 +
1691481185.02673-UTR-H-paniculata_contig3884:9195..95651691481185.02673-UTR-H-paniculata_contig3884:9195..9565Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3884 9196..9565 +
1622930191.1805618-UTR-H-paniculata_contig3884:12827..128641622930191.1805618-UTR-H-paniculata_contig3884:12827..12864Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3884 12828..12864 +
1691481185.0382102-UTR-H-paniculata_contig3884:12827..128641691481185.0382102-UTR-H-paniculata_contig3884:12827..12864Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3884 12828..12864 +
1622930191.2189026-UTR-H-paniculata_contig3884:14769..161001622930191.2189026-UTR-H-paniculata_contig3884:14769..16100Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3884 14770..16100 +
1691481185.059471-UTR-H-paniculata_contig3884:14769..161001691481185.059471-UTR-H-paniculata_contig3884:14769..16100Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3884 14770..16100 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930191.2001715-CDS-H-paniculata_contig3884:12864..147691622930191.2001715-CDS-H-paniculata_contig3884:12864..14769Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3884 12865..14769 +
1691481185.0474367-CDS-H-paniculata_contig3884:12864..147691691481185.0474367-CDS-H-paniculata_contig3884:12864..14769Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3884 12865..14769 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3884.10137.1

>prot_H-paniculata_contig3884.10137.1 ID=prot_H-paniculata_contig3884.10137.1|Name=mRNA_H-paniculata_contig3884.10137.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=635bp
MTAHPVRYFQARTSMAFRRGSFGRRGDKISGSSSPLSTSKASTTRNAAAT
AAAPSVAVAGNIMVLGEEDPQAEATHATSSASSSDMMQLVDGKLSNGDGD
GYVRGGSSAAAVGTDAYTSSKFWFRRVLSSPRTRGASSMSVVDNDVSDAR
GPTAEPLDGLAPPGEEHGAFESHIQQQHVQQHLNLGEQARGRRKIRPVAS
MDELSMVMGETAYDPRQSATQELRYGSYSPPSSTASHPHDRVEDERDFRA
TSMALCFTPLNFGEGRGGQGPSKRARSGAEPLPKAAAEQHHHRAATSGMM
GGCGGGDNDVWASTVHYGRDMMAFSTPLDTSSAVDHSRQNATRSGGDSIK
KDGVEEAEGGDVWGRAAAAVAAAAGVSSDGVTGTECAASGRSDPADGGGG
VQLPSPPPPPATNEAWLASLEPLMCGVPPDTHPEDFLHEILRKRGYRTDM
VPGTGSAFHRPPSPEQVAAYDKAILRAVLDEDESTLESMRSSGTRMDACN
RFGDTVLHMACRRGRVRSLRYLLRECGGRGLEFTDDFGRTVMHDACWTST
PRFDVASMLLARDTRLLRILDKRGSSPLQYVPRAQWAQWCAFFESRKEVY
WPPLPPGQEDVAGIIPLDTDVVPTSTQQGSSWAA*
back to top

mRNA from alignment at H-paniculata_contig3884:9196..16100+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3884.10137.1 ID=mRNA_H-paniculata_contig3884.10137.1|Name=mRNA_H-paniculata_contig3884.10137.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6905bp|location=Sequence derived from alignment at H-paniculata_contig3884:9196..16100+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAAATTGGTCCGTTTGAAAAAAACACGCCGCAAAAAAAGGAAGTAATTC
GCGTGTTTTACAATGCCAGCTTGATGCCAGCTCAGTAGATGTTCGCAGTG
TATCTCTGGCTGTCAATTGTGTCTTTTTGGTCGTTACGATCTGGTCAGGC
ACATAAATGACACAACAATTATAGGAAGAGACACTGATTCAAACTGGCGT
ATATACGACGTCTGCAAACGCAACCGCTTAGGCCGCCTCCCAGCAGTTCA
CCGAGGAGTCCCGAGTCTCTCTAGAACCCTGACGATTCGAAAGGAGGGCA
GGCCACGCGACGAAACACGCAGCAGACATTGAAGAGCAGCAGCGCGCAGA
GGAAAACAGGGTTCTGACAGGTGATGATTGGGTATCCTGATGTAACTTTT
TCAACCTGAGCATGTGTAACGGTGCATCTATAGTAATGTTTGTAGAAATG
TAGAGTGGACAGAAAGTCCCACGATAAATTCTTGCTACCGTTCTGCAGTA
TCTCTGCCACCCAACTCCCCACCCCCCCCCCCCCCTCTCTCTCTCTCCCC
CTTTCTCTTTACCAGGCGTCTGCCTTGCGCAGAAGCCTCACTGTTAGCAT
TCTTGTGTTTTCGCGTTGTAGTTCTAAGGTGAAAGGGTGGCTTTTCGAGG
ACAGTTGACGTATTTGTTGTTGGTGTAATGAAGAATCACAGTTTGCACTC
TTCTCCTACCGCGGTGTCCGGCACACCACCCATTGCAGGAAGGTGTCTTT
TATGTAGCTGCTCGTATCAGGCCCAAGCTTGATATGCGTCCTAGGCAATA
TTATTGTTCATCCCACAGCATGGTTTGGCGAACTAGAACGTTATTTTTGT
GCAAGTCAAAACTGGTTTTATATCGAAGACACAGAGTGCAAACTATGAGG
TTCAACAGGCGGTGTTCGAAATATCGGAATAGCCCTAAAACTATGGCGGT
TAGCAGGCTTGAGCCATGTGTGTAATAGATATGGGTTTGGTTTCCGTGAG
GATTGGTTTATGATATCTCAATCGTGTCTACTGCGTCCATGCGATGACCG
TGTGCAGCATACGTCGAACCCCTTGCTACCATTAGAACTCTAATTATATT
CGGGATCCTAAAATCAGCGAAAGTTGCAGTTGAGGTGACGTAAACCTTGT
GGTTACCAGTCACAGAAATCACAGCTCGACGTGGCCGTTCCTACATGAGA
AAAAATTCCGTCCATTTTGATTACAGATGGGAATAAGACATGAACAATCA
TGTTTGGAGAAGAATACAGTTTGAGGTATATCTGGACAGTGTCAACTCTT
TTCACATAGCCTATACCCGGACCTCGGCAATTACTGTCCTTGTAACTGGG
TCGAAATTATACCTATCTGGCGAACAAAACCCGCGGAAAGTGAACCCCGA
CTAATTTACAACAGTGGAAATCAACGCATCAGCATTCACTTTCCGCCTCT
TTCCTCGGAAGATAGCCCACCATCACCCCACAATTATTAAAGGACAGAAG
GTCTTCACTACTAAGTACTGCATTAACTACCTACCACAGTCGAAGCCAAC
CACTAACCTGTTGAAGATCTGGCCAATTTCCCCATTCACTTGCTCTGGCG
GAAGGGCCCATGATTCGTTGGAGAACTGGTCTGAACGCTGGTGGCTCTGA
TCATGGTTTTTCCATACTAACACGTCGATTTCACACGAATCTGGCGAGAA
TGTGAAGAAGATTTTTCAAGTCAGATTTGGTGGTTGGTAGGTACATGATG
TGTTCTGTAGGGGAACAAAATAGCGAGTTACAGGCCGCGGAAGTGTTCAC
GGTTGCCCTCAGGCGACTAAAGGTAGCCAAGTGAATTACAACGTGTGACG
AAGGAACGTGGGTGCACTTCCGTGCATTGCGGTCACAGTCGCGTATGAGG
CTGTTTCCGTGTATCAGATGGCCGTATTTGGGCGGCTTTATAGAGCTCGT
ACACACCATAACTATTTCTGGCCGGAAACTGTCCAGGTATCCCTCAAACT
GTATTTTTCCCTCTCATATATGGATAATGTCGAGTTCCGTGAGCTGGCTA
CACATGATAAAACTCGAAGTCGAAATAGATGTTTTCTTCTAGCGTGCGAT
TGCCTTTACTTGCCCCCCAGCCAAGTTCGCGTCTGCATAATATCGAAAGG
CAAACGCGATAAACGTACTACTCCAATGCTAACACTTTCTATTTTTGTCA
TGTTTTCCAGTGAAAAAAGTAGAACCCTATCTGTTTAATGGTGGTGCTTC
CATTGCTTCATTTCACTTTTCACTAAAACAGAACAGATGTGCCTTTCGAG
CGTACGTCCGCTTTACGCAGCCTAGGCTTGGGGGTGACGCCAGCGATATG
ACATTCGTGTTACGTTTACGTAGATACCAACTCTCACCTGAGTAAACTCC
AGGACATTTCGATGCGCGGGATTGTTGATGGGAGTGCTCGAATGATGGCG
GAGAGAGAATGTACAGCTGTCGCACTCGATGAAAGGTGTTTGTGCTACGG
GAATGTGTAAATCTTGAGTGTGGCTGGAAAACTTGAGGCGACGTTCGTAG
TATCAGAGAAAAAAATCAAAATTGAATTTTTCCAAGGATGTTCTCGGTGC
TAGTGCAGGGATGATAATACCGCGATATTGCGCAGTATTCGGTATTCGGT
ACCGATACCGTGAAGAGCTCGAATTTCCGTTCGCCGTTACCATGCACGGC
ACAGCCGAACGTGATTACCTCAATGTCAGGCTTTTCCTGTTTACGGTACC
CTGAAACCCCGTTACCTTACCTATACCGTGTCTTTGAGCTGCGGACTTGA
TGAATTGTTGTAACGGGCCCCCACACTACTGAGTCGGCTCCTCGGTGTAA
CTCCTCGTATACACCGTTTACGGCACACGTAGCTTCATCGCTGTGCTTTT
TATCTTGTGCTTGAGCAAGGGTTGGGCACCCAAATACTGTGCCAGATACC
AGATCCCGTACCATTTAATACCGAGAAGACAACATACCGTACTTCGGGAG
GAAAAACCAAGTACGACGTACCGCGCAAATACCGAGATATTCATATACCG
TACCGTGTCATTGATACGCCGAATACTAGAGGAGATCCAATGAGAAAACG
TGTAGCTGCTAGGGGGCGTCTCGAGCTTCCCTCGCCTGACCTCGCCACCA
TGTTCTCGCTGTCCTTTCTCTGTTCTTGGCGAACAATTCGGTACGTGTTT
GTCAAAACATGGAATCTACACTTTGACACAAATGTAGAAACAAGCTCAAT
GACGCAGTTTCACTTGTACTACTTTGTCCCAACACCGTGGAGCGAAGAAA
ACATCAGCAGCCGAAATCTCTCGAACATCATCACGTGGGAGATTCGCTGA
AACAACATACAAGCAATCTGCTAAGCAAATTATAACAAAAAAAACATTCG
GAAAACCCGGGATACGTTGTGCAAAACCTCTCCCCTCTCTAGAAGCTTTA
TTTTTTATTTTTCGAGTGAGGCGTGCGTCTCAAGTTTTCAAGTACGGACT
CCCTTGGAGCTGCATTTATTACTTCCGGCGCATGCATTCGTTAACCATGG
GAATACCTTCCGCTCCCCCACCCCGTTGCCGGAATTTTTAATTCGCCAAT
TTCCTGAAACCCATTGTTTGGCCATGTGACAGACGCATTTTTAAAGGACT
TTGAGATAAATCAACTTTCATGACCGCGCATCCGGTGCGCTACTTCCAAG
CGCGAACGTCGATGGCCTTTCGGCGCGGAAGTTTCGGACGCCGCGGTGAC
AAGATATCGGGTTCGTCCTCACCATTATCCACGTCTAAAGCATCTACTAC
GCGAAATGCCGCCGCCACCGCTGCCGCTCCCTCGGTGGCAGTTGCCGGCA
ACATCATGGTATTAGGCGAAGAGGACCCACAAGCAGAAGCAACACATGCT
ACTTCATCAGCATCATCCTCGGATATGATGCAGTTGGTAGACGGGAAGCT
CAGCAACGGAGACGGCGATGGCTACGTCCGGGGTGGCAGTTCCGCCGCCG
CCGTAGGAACAGACGCGTACACGTCTAGTAAATTCTGGTTTCGACGAGTG
CTGTCGTCCCCGCGAACACGAGGTGCGTCCTCCATGTCTGTAGTTGATAA
CGATGTGTCCGACGCGCGGGGGCCCACGGCTGAACCGTTGGACGGGCTTG
CTCCTCCTGGAGAAGAGCATGGTGCCTTCGAGTCGCATATTCAGCAACAG
CATGTGCAGCAGCATCTGAACCTCGGCGAACAAGCGCGGGGGCGGAGAAA
AATTCGCCCCGTAGCTTCAATGGATGAGCTCTCGATGGTGATGGGGGAGA
CGGCGTACGATCCCCGACAGTCAGCAACACAAGAACTGCGTTATGGGTCA
TATTCCCCTCCGTCGTCGACAGCATCACATCCGCACGACAGGGTGGAGGA
CGAGCGTGACTTCCGCGCCACCTCTATGGCCTTGTGTTTTACACCGCTCA
ACTTCGGTGAAGGTCGCGGGGGTCAGGGCCCTAGCAAGCGGGCGAGGTCG
GGTGCAGAACCGCTGCCGAAGGCCGCAGCGGAACAGCATCATCACCGTGC
TGCCACTTCGGGCATGATGGGAGGCTGCGGCGGCGGCGACAATGACGTGT
GGGCATCCACGGTCCACTACGGTCGGGATATGATGGCGTTTTCAACGCCT
CTGGATACGTCCAGTGCTGTGGACCATTCCAGGCAAAACGCAACACGGAG
CGGCGGCGACTCTATCAAGAAAGATGGGGTGGAAGAGGCGGAAGGGGGTG
ACGTCTGGGGGAGGGCAGCGGCGGCGGTGGCGGCGGCGGCAGGAGTATCC
TCGGATGGAGTCACCGGAACTGAGTGCGCTGCGTCTGGACGATCAGACCC
GGCAGATGGTGGGGGCGGAGTACAACTACCATCACCACCGCCGCCACCTG
CGACAAACGAAGCATGGCTTGCATCTCTGGAGCCCTTGATGTGTGGCGTG
CCGCCCGACACACATCCAGAGGACTTTTTGCACGAAATTTTACGGAAGAG
GGGCTACAGGACCGACATGGTCCCCGGAACGGGCTCCGCCTTCCACCGAC
CGCCTTCGCCGGAGCAGGTGGCGGCTTACGACAAGGCCATCTTGAGGGCT
GTCCTGGATGAGGATGAGTCGACTTTGGAGAGCATGCGGTCTTCGGGGAC
GAGAATGGATGCGTGCAACAGATTCGGGGACACCGTGCTGCACATGGCGT
GCCGCCGGGGACGCGTCCGCTCCCTGAGGTACCTCCTGCGAGAGTGCGGC
GGGCGGGGGCTCGAGTTCACCGACGACTTTGGGCGGACCGTGATGCACGA
CGCGTGTTGGACGTCCACGCCGCGGTTCGATGTGGCCTCGATGTTGCTCG
CTAGGGACACACGCCTTTTGCGTATCTTGGACAAGCGCGGGTCGTCTCCT
CTGCAGTACGTGCCGCGGGCGCAGTGGGCGCAGTGGTGCGCGTTTTTCGA
GAGCCGCAAGGAGGTCTACTGGCCGCCCCTACCCCCTGGACAGGAAGACG
TGGCCGGTATTATCCCTCTCGACACCGATGTTGTGCCTACGAGCACACAA
CAAGGGTCCTCTTGGGCTGCTTGATGATTTCGGGTAGGAGGGGGGGCGGG
GTGCTGTAGGAATTGATGGGCATGGGGTATTTTGTATTTGCTGCATTTGG
TGTAGTGTAGGGCGGTGGAGGTCGTGGGGGGGGAGAGGAAAGGTGGCTTG
TAGAAACCATCAGGGCAGGGTGGAAGAAGACTTCTGACAAGACTGGTATG
GGAGCTACGTCTTCACGTTCACGGCATGACCCCCAGCCGTTGGATTTGTG
TCCAGTTACCTGTTTTTTCGTTTTGTGAAATATGATGTGAAGGGGAAGGA
GCGTGGGGAGGTGGGGAGGTGGGGATGGGTCTGTGGAATTATTTGCAGCA
ATGTTATTGGCGTCCTGCGGGAAGAGACAGACAGGGACAGATAGGCAGAC
TTCATGATTGATTTGTTTCGTGTTGTGCTACAGCCCGAGGGACACATGCG
GTGCGTGCATGATGTATAATGGAACCAGTGTTTTATGAATGTGTCTTGGA
TGTTTGGTCGGTCGCCGCCGCTGCCCTCACACAATTCTGGTTCAAGCATG
GGTGCGGTTTCTTTTCTTTGCCAGTAGAAGAAAAACTGAGCTTGTTCGAT
ACTGATAACCCAATTTTAAATGGGAAATTTGATGCTTGAAAAGGTGGAAT
GGGGTGCACGCATATCCACCTGGCTTTCTCGAGATCCGCACGGTTGAAGA
AATATGGCTTGGGAAGGGGCTTTTCAGTCACGGGTTCATGATTTATAGCC
GAGGATTTCAAGCAACGTTCTTATTATTCTCGGCTAGTTGTCATGGATAT
GCTGTTTGGAAAAGGCATACTTTGATGCCAATGCAGCAGCTATCTAAACG
TTGTACTCGCCGTAGATGAGGGGGCCTCGGAATCTGCTTGAGTCAGGGAA
GAGGGTATTAGACAGCCCGGTGTCAACTTTGTTTTGATGATGTGCCGTTG
CAATTTACATAAGTACTACCGCTGTTCTTGCATCCAAGCGAGGAGTGAGG
GACACGTTCGATAGAAGTCCCTTCTTTGCTCAGGATTCGTGAAAAAAGAC
TGAGAAAAACGAGGGAAACCCCCGCCTTGTTTTTCAGTCTTCTATTGTAC
TGCGGGAAGTACAAGAAATATCAACATGGCGTGTAGGGTCATGTTGAATG
CAAGAGGGTTGTAATCCCTATTGATAAAACCGTGTACCCCCCCCGAGTAG
AACACCTGACATTTTCGCCTCAGCGGTGCATCTTTCGAAGATTATGTGTA
TTGGGTATACATGTATTTGGACTGGAAGGAGGGAAAATAGAGTCACACAG
TGCAATTCTCCATGCTAGTCTCAGGAAAGATTTCCAAACAATCATATTTT
ACCAC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig3884:9196..16100+

>mRNA_H-paniculata_contig3884.10137.1 ID=mRNA_H-paniculata_contig3884.10137.1|Name=mRNA_H-paniculata_contig3884.10137.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3810bp|location=Sequence derived from alignment at H-paniculata_contig3884:9196..16100+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCGCGCATCCGGTGCGCTACTTCCAAGCGCGAACGTCGATGGCCTT
TCGGCGCGGAAGTTTCGGACGCCGCGGTGACAAGATATCGGGTTCGTCCT
CACCATTATCCACGTCTAAAGCATCTACTACGCGAAATGCCGCCGCCACC
GCTGCCGCTCCCTCGGTGGCAGTTGCCGGCAACATCATGGTATTAGGCGA
AGAGGACCCACAAGCAGAAGCAACACATGCTACTTCATCAGCATCATCCT
CGGATATGATGCAGTTGGTAGACGGGAAGCTCAGCAACGGAGACGGCGAT
GGCTACGTCCGGGGTGGCAGTTCCGCCGCCGCCGTAGGAACAGACGCGTA
CACGTCTAGTAAATTCTGGTTTCGACGAGTGCTGTCGTCCCCGCGAACAC
GAGGTGCGTCCTCCATGTCTGTAGTTGATAACGATGTGTCCGACGCGCGG
GGGCCCACGGCTGAACCGTTGGACGGGCTTGCTCCTCCTGGAGAAGAGCA
TGGTGCCTTCGAGTCGCATATTCAGCAACAGCATGTGCAGCAGCATCTGA
ACCTCGGCGAACAAGCGCGGGGGCGGAGAAAAATTCGCCCCGTAGCTTCA
ATGGATGAGCTCTCGATGGTGATGGGGGAGACGGCGTACGATCCCCGACA
GTCAGCAACACAAGAACTGCGTTATGGGTCATATTCCCCTCCGTCGTCGA
CAGCATCACATCCGCACGACAGGGTGGAGGACGAGCGTGACTTCCGCGCC
ACCTCTATGGCCTTGTGTTTTACACCGCTCAACTTCGGTGAAGGTCGCGG
GGGTCAGGGCCCTAGCAAGCGGGCGAGGTCGGGTGCAGAACCGCTGCCGA
AGGCCGCAGCGGAACAGCATCATCACCGTGCTGCCACTTCGGGCATGATG
GGAGGCTGCGGCGGCGGCGACAATGACGTGTGGGCATCCACGGTCCACTA
CGGTCGGGATATGATGGCGTTTTCAACGCCTCTGGATACGTCCAGTGCTG
TGGACCATTCCAGGCAAAACGCAACACGGAGCGGCGGCGACTCTATCAAG
AAAGATGGGGTGGAAGAGGCGGAAGGGGGTGACGTCTGGGGGAGGGCAGC
GGCGGCGGTGGCGGCGGCGGCAGGAGTATCCTCGGATGGAGTCACCGGAA
CTGAGTGCGCTGCGTCTGGACGATCAGACCCGGCAGATGGTGGGGGCGGA
GTACAACTACCATCACCACCGCCGCCACCTGCGACAAACGAAGCATGGCT
TGCATCTCTGGAGCCCTTGATGTGTGGCGTGCCGCCCGACACACATCCAG
AGGACTTTTTGCACGAAATTTTACGGAAGAGGGGCTACAGGACCGACATG
GTCCCCGGAACGGGCTCCGCCTTCCACCGACCGCCTTCGCCGGAGCAGGT
GGCGGCTTACGACAAGGCCATCTTGAGGGCTGTCCTGGATGAGGATGAGT
CGACTTTGGAGAGCATGCGGTCTTCGGGGACGAGAATGGATGCGTGCAAC
AGATTCGGGGACACCGTGCTGCACATGGCGTGCCGCCGGGGACGCGTCCG
CTCCCTGAGGTACCTCCTGCGAGAGTGCGGCGGGCGGGGGCTCGAGTTCA
CCGACGACTTTGGGCGGACCGTGATGCACGACGCGTGTTGGACGTCCACG
CCGCGGTTCGATGTGGCCTCGATGTTGCTCGCTAGGGACACACGCCTTTT
GCGTATCTTGGACAAGCGCGGGTCGTCTCCTCTGCAGTACGTGCCGCGGG
CGCAGTGGGCGCAGTGGTGCGCGTTTTTCGAGAGCCGCAAGGAGGTCTAC
TGGCCGCCCCTACCCCCTGGACAGGAAGACGTGGCCGGTATTATCCCTCT
CGACACCGATGTTGTGCCTACGAGCACACAACAAGGGTCCTCTTGGGCTG
CTTGAATGACCGCGCATCCGGTGCGCTACTTCCAAGCGCGAACGTCGATG
GCCTTTCGGCGCGGAAGTTTCGGACGCCGCGGTGACAAGATATCGGGTTC
GTCCTCACCATTATCCACGTCTAAAGCATCTACTACGCGAAATGCCGCCG
CCACCGCTGCCGCTCCCTCGGTGGCAGTTGCCGGCAACATCATGGTATTA
GGCGAAGAGGACCCACAAGCAGAAGCAACACATGCTACTTCATCAGCATC
ATCCTCGGATATGATGCAGTTGGTAGACGGGAAGCTCAGCAACGGAGACG
GCGATGGCTACGTCCGGGGTGGCAGTTCCGCCGCCGCCGTAGGAACAGAC
GCGTACACGTCTAGTAAATTCTGGTTTCGACGAGTGCTGTCGTCCCCGCG
AACACGAGGTGCGTCCTCCATGTCTGTAGTTGATAACGATGTGTCCGACG
CGCGGGGGCCCACGGCTGAACCGTTGGACGGGCTTGCTCCTCCTGGAGAA
GAGCATGGTGCCTTCGAGTCGCATATTCAGCAACAGCATGTGCAGCAGCA
TCTGAACCTCGGCGAACAAGCGCGGGGGCGGAGAAAAATTCGCCCCGTAG
CTTCAATGGATGAGCTCTCGATGGTGATGGGGGAGACGGCGTACGATCCC
CGACAGTCAGCAACACAAGAACTGCGTTATGGGTCATATTCCCCTCCGTC
GTCGACAGCATCACATCCGCACGACAGGGTGGAGGACGAGCGTGACTTCC
GCGCCACCTCTATGGCCTTGTGTTTTACACCGCTCAACTTCGGTGAAGGT
CGCGGGGGTCAGGGCCCTAGCAAGCGGGCGAGGTCGGGTGCAGAACCGCT
GCCGAAGGCCGCAGCGGAACAGCATCATCACCGTGCTGCCACTTCGGGCA
TGATGGGAGGCTGCGGCGGCGGCGACAATGACGTGTGGGCATCCACGGTC
CACTACGGTCGGGATATGATGGCGTTTTCAACGCCTCTGGATACGTCCAG
TGCTGTGGACCATTCCAGGCAAAACGCAACACGGAGCGGCGGCGACTCTA
TCAAGAAAGATGGGGTGGAAGAGGCGGAAGGGGGTGACGTCTGGGGGAGG
GCAGCGGCGGCGGTGGCGGCGGCGGCAGGAGTATCCTCGGATGGAGTCAC
CGGAACTGAGTGCGCTGCGTCTGGACGATCAGACCCGGCAGATGGTGGGG
GCGGAGTACAACTACCATCACCACCGCCGCCACCTGCGACAAACGAAGCA
TGGCTTGCATCTCTGGAGCCCTTGATGTGTGGCGTGCCGCCCGACACACA
TCCAGAGGACTTTTTGCACGAAATTTTACGGAAGAGGGGCTACAGGACCG
ACATGGTCCCCGGAACGGGCTCCGCCTTCCACCGACCGCCTTCGCCGGAG
CAGGTGGCGGCTTACGACAAGGCCATCTTGAGGGCTGTCCTGGATGAGGA
TGAGTCGACTTTGGAGAGCATGCGGTCTTCGGGGACGAGAATGGATGCGT
GCAACAGATTCGGGGACACCGTGCTGCACATGGCGTGCCGCCGGGGACGC
GTCCGCTCCCTGAGGTACCTCCTGCGAGAGTGCGGCGGGCGGGGGCTCGA
GTTCACCGACGACTTTGGGCGGACCGTGATGCACGACGCGTGTTGGACGT
CCACGCCGCGGTTCGATGTGGCCTCGATGTTGCTCGCTAGGGACACACGC
CTTTTGCGTATCTTGGACAAGCGCGGGTCGTCTCCTCTGCAGTACGTGCC
GCGGGCGCAGTGGGCGCAGTGGTGCGCGTTTTTCGAGAGCCGCAAGGAGG
TCTACTGGCCGCCCCTACCCCCTGGACAGGAAGACGTGGCCGGTATTATC
CCTCTCGACACCGATGTTGTGCCTACGAGCACACAACAAGGGTCCTCTTG
GGCTGCTTGA
back to top