prot_H-paniculata_contig3869.10106.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig3869.10106.1
Unique Nameprot_H-paniculata_contig3869.10106.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length400
Homology
[Close]
BLAST of mRNA_H-paniculata_contig3869.10106.1 vs. uniprot
Match: A0A6H5L374_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L374_9PHAE)

HSP 1 Score: 284 bits (727), Expect = 5.460e-89
Identity = 150/295 (50.85%), Postives = 183/295 (62.03%), Query Frame = 0 
Query:  106 PVQLFRYGVFPYLSGRCLTSASGACTLWREVAVEEELWKPLCLRRWQGKHVPLLETKLARTTINTRDHRWQAEEEEGENNVRQSLGSSDDETQGSTNEYWRQSPEIRAASLKRGLEDLVADMSIREMKKRLEDLGANPRRLGSCLEKEECVSLLMGSLLLSREGLLRVGGQLPPWLSSLRGWRWSYYFADVDSRRCWLTMDDLVRCRWTLRFPADVPFASSPVLLPSVTCEFRRDYSYTSEVFHPDSLDWHFEDNQRCVKVNNYPGLEAERNE-SWGWQLVNAHAIFSQQRPPPP 399
            P ++ R  +  +L   CL  ASGAC  WR+ AV+E+LWK LCLRRW GKHV LLE            H +Q + E                            P   A SL  GLE+LVA M I+ MK+RL +LGANP RL +CLEK+ECVSL+MGS+LLSR+GLLR  GQLP WLS +RGWRWS++FAD D++R W+TM+DL R  W + FP  V  A  P  L +V CEF RD++YT   FH D L WHFEDN   VKV+NYP LE ER+E SWGW+L+NAH  F Q R  PP
Sbjct:  135 PDEILRSCILGFLGAGCLQRASGACRAWRDAAVDEQLWKELCLRRWVGKHVALLEDC---------HHFYQQQREXXXXXXXXXXXXXXXXX------XXXLQPIELARSLSGGLEELVAAMPIKVMKRRLHELGANPARLAACLEKDECVSLMMGSMLLSRDGLLRQKGQLPAWLSRVRGWRWSFHFADKDAKRQWMTMEDLARTPWMMSFPGHVSSAVPPPPLLAVRCEFHRDFTYTDAGFHQDGLVWHFEDNHHFVKVSNYPALEVERDEKSWGWRLINAHVTFQQDRALPP 414
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3869.10106.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L374_9PHAE5.460e-8950.85F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.1280.50coord: 101..185
e-value: 2.6E-6
score: 29.3
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..21
score: 0.533
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 114..154

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3869contigH-paniculata_contig3869:5274..15845 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3869.10106.1mRNA_H-paniculata_contig3869.10106.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig3869 5018..15994 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig3869.10106.1 ID=prot_H-paniculata_contig3869.10106.1|Name=mRNA_H-paniculata_contig3869.10106.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=400bp
MCWGGCWRVACTRVISWVVWSRTQRWSWQRYGDVKGERPVATTHISQRQK
EGIPSSLRCRVGFCGRCNDPKRKDKRDKSVCPLSSSPNSTAAASLNSSLP
GLGAIPVQLFRYGVFPYLSGRCLTSASGACTLWREVAVEEELWKPLCLRR
WQGKHVPLLETKLARTTINTRDHRWQAEEEEGENNVRQSLGSSDDETQGS
TNEYWRQSPEIRAASLKRGLEDLVADMSIREMKKRLEDLGANPRRLGSCL
EKEECVSLLMGSLLLSREGLLRVGGQLPPWLSSLRGWRWSYYFADVDSRR
CWLTMDDLVRCRWTLRFPADVPFASSPVLLPSVTCEFRRDYSYTSEVFHP
DSLDWHFEDNQRCVKVNNYPGLEAERNESWGWQLVNAHAIFSQQRPPPP*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036047F-box-like_dom_sf