mRNA_H-paniculata_contig384.10056.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig384.10056.1
Unique NamemRNA_H-paniculata_contig384.10056.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig384.10056.1 vs. uniprot
Match: A0A6H5KJ77_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ77_9PHAE)

HSP 1 Score: 216 bits (551), Expect = 3.750e-59
Identity = 116/200 (58.00%), Postives = 144/200 (72.00%), Query Frame = 3 
Query:   18 GGSSKKGMRDVMAKFKKGRKFGRKVSDAEASVVPEAAVVMVGIGKTESETQTVLRVTILEAEGLRNVAVLKKTDSYVTAHLATRTGIREERTSVKKNTCDPKWNEPLSFIVPTGTLVDAQLFMRVMGKQKMRDDIMLGRVELPLAGITNAAATVGKNRGDVGGARGKQTAEGGRWFALEEGQGRLRIDADLVTKKPSLIV 617
            GG +  G++  MAK KKG +        +      AAV M+G+G   S  QT+LRVTILEAEGLRNVAVLKKTDSYV A L TRTG RE RT+V+KNTCDPKWNEPLSF++P+G+++DAQL +R++GKQK+RDD+ LGRVELPLAGI+ A     K  GD+G            WF L +GQGRL+IDA+LVT++PSLIV
Sbjct: 1457 GGGATSGVKKGMAKLKKGLRKASTRGGGKXXXXXAAAVAMLGVGVDNSGPQTILRVTILEAEGLRNVAVLKKTDSYVAAELVTRTGRREGRTAVQKNTCDPKWNEPLSFLLPSGSVIDAQLCLRIVGKQKLRDDLPLGRVELPLAGISTAGT---KGPGDIG-----------AWFQLLDGQGRLKIDAELVTRRPSLIV 1642
[Close]
BLAST of mRNA_H-paniculata_contig384.10056.1 vs. uniprot
Match: D8LJF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF1_ECTSI)

HSP 1 Score: 212 bits (539), Expect = 1.520e-57
Identity = 113/194 (58.25%), Postives = 140/194 (72.16%), Query Frame = 3 
Query:   36 GMRDVMAKFKKGRKFGRKVSDAEASVVPEAAVVMVGIGKTESETQTVLRVTILEAEGLRNVAVLKKTDSYVTAHLATRTGIREERTSVKKNTCDPKWNEPLSFIVPTGTLVDAQLFMRVMGKQKMRDDIMLGRVELPLAGITNAAATVGKNRGDVGGARGKQTAEGGRWFALEEGQGRLRIDADLVTKKPSLIV 617
            G++  MAK KKG +               AAV M G+G  +S  QT+LRVTILEAEGLRNVAVLKKTDSYV A L TRTG RE RT+V+KNTCDPKWNEPLSF++P+G+++DAQL +R++GKQK+RDD+ LGRVELPLAGI+ A     K  GD+G            WF L +GQGRL+IDA++VT++PSLIV
Sbjct: 1610 GVKKGMAKLKKGARKASTRGXXXXXXXXXAAVAMSGVGVDDSGPQTILRVTILEAEGLRNVAVLKKTDSYVAAELVTRTGRREGRTAVQKNTCDPKWNEPLSFLLPSGSVIDAQLSLRIVGKQKLRDDLPLGRVELPLAGISTAGT---KGPGDIG-----------AWFQLLDGQGRLKIDAEVVTRRPSLIV 1789
[Close]
BLAST of mRNA_H-paniculata_contig384.10056.1 vs. uniprot
Match: A0A672MVY7_SINGR (Synaptotagmin n=17 Tax=Euteleostomi TaxID=117571 RepID=A0A672MVY7_SINGR)

HSP 1 Score: 55.5 bits (132), Expect = 1.270e-5
Identity = 41/142 (28.87%), Postives = 76/142 (53.52%), Query Frame = 3 
Query:  177 LRVTILEAEGLRNVAVLKKTDSYVTAHLATR-TGIREERTSVKKNTCDPKWNEPLSFIVPTGTLVDAQLFMRVMGKQKMRDDIMLGRVELPLAGITNAAATVGKNRGDVGGARGKQTAEGGRWFALEEGQGRLRIDADLVTK 599
            L V +LEA+ L+ + V   +D YV  HL      +++++T++KKNT +P +NE  SF VP+  +   Q+ + V+   K+  +  +G+V + L    N+  T  ++  D+     +  A+   W AL+  +    +DA+L+ K
Sbjct:   37 LTVVVLEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPSEQIQKVQVVVTVLDYDKIGKNDAIGKVLIGL----NSTGTEQRHWSDMLANPRRPIAQ---WHALKPEED---VDAELIKK 168
[Close]
BLAST of mRNA_H-paniculata_contig384.10056.1 vs. uniprot
Match: A0A672MY39_SINGR (Synaptotagmin n=25 Tax=Cyprinoidei TaxID=30727 RepID=A0A672MY39_SINGR)

HSP 1 Score: 55.5 bits (132), Expect = 7.820e-5
Identity = 41/142 (28.87%), Postives = 76/142 (53.52%), Query Frame = 3 
Query:  177 LRVTILEAEGLRNVAVLKKTDSYVTAHLATR-TGIREERTSVKKNTCDPKWNEPLSFIVPTGTLVDAQLFMRVMGKQKMRDDIMLGRVELPLAGITNAAATVGKNRGDVGGARGKQTAEGGRWFALEEGQGRLRIDADLVTK 599
            L V +LEA+ L+ + V   +D YV  HL      +++++T++KKNT +P +NE  SF VP+  +   Q+ + V+   K+  +  +G+V + L    N+  T  ++  D+     +  A+   W AL+  +    +DA+L+ K
Sbjct:  295 LTVVVLEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPSEQIQKVQVVVTVLDYDKIGKNDAIGKVLIGL----NSTGTEQRHWSDMLANPRRPIAQ---WHALKPEED---VDAELIKK 426
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig384.10056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KJ77_9PHAE3.750e-5958.00C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LJF1_ECTSI1.520e-5758.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A672MVY7_SINGR1.270e-528.87Synaptotagmin n=17 Tax=Euteleostomi TaxID=117571 R... [more]
A0A672MY39_SINGR7.820e-528.87Synaptotagmin n=25 Tax=Cyprinoidei TaxID=30727 Rep... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig384contigH-paniculata_contig384:10313..14253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1081
Cds size582
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig384.10056.1prot_H-paniculata_contig384.10056.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig384 10351..13792 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930180.2545671-UTR-H-paniculata_contig384:10312..103501622930180.2545671-UTR-H-paniculata_contig384:10312..10350Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig384 10313..10350 +
1691481179.8987417-UTR-H-paniculata_contig384:10312..103501691481179.8987417-UTR-H-paniculata_contig384:10312..10350Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig384 10313..10350 +
1622930180.3708725-UTR-H-paniculata_contig384:13792..142531622930180.3708725-UTR-H-paniculata_contig384:13792..14253Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig384 13793..14253 +
1691481179.9788535-UTR-H-paniculata_contig384:13792..142531691481179.9788535-UTR-H-paniculata_contig384:13792..14253Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig384 13793..14253 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930180.2737253-CDS-H-paniculata_contig384:10350..104851622930180.2737253-CDS-H-paniculata_contig384:10350..10485Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig384 10351..10485 +
1691481179.9196155-CDS-H-paniculata_contig384:10350..104851691481179.9196155-CDS-H-paniculata_contig384:10350..10485Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig384 10351..10485 +
1622930180.290302-CDS-H-paniculata_contig384:11371..115031622930180.290302-CDS-H-paniculata_contig384:11371..11503Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig384 11372..11503 +
1691481179.9366715-CDS-H-paniculata_contig384:11371..115031691481179.9366715-CDS-H-paniculata_contig384:11371..11503Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig384 11372..11503 +
1622930180.3071845-CDS-H-paniculata_contig384:13477..137921622930180.3071845-CDS-H-paniculata_contig384:13477..13792Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig384 13478..13792 +
1691481179.9593668-CDS-H-paniculata_contig384:13477..137921691481179.9593668-CDS-H-paniculata_contig384:13477..13792Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig384 13478..13792 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig384.10056.1

>prot_H-paniculata_contig384.10056.1 ID=prot_H-paniculata_contig384.10056.1|Name=mRNA_H-paniculata_contig384.10056.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=194bp
MRDVMAKFKKGRKFGRKVSDAEASVVPEAAVVMVGIGKTESETQTVLRVT
ILEAEGLRNVAVLKKTDSYVTAHLATRTGIREERTSVKKNTCDPKWNEPL
SFIVPTGTLVDAQLFMRVMGKQKMRDDIMLGRVELPLAGITNAAATVGKN
RGDVGGARGKQTAEGGRWFALEEGQGRLRIDADLVTKKPSLIV*
back to top

mRNA from alignment at H-paniculata_contig384:10313..14253+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig384.10056.1 ID=mRNA_H-paniculata_contig384.10056.1|Name=mRNA_H-paniculata_contig384.10056.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3941bp|location=Sequence derived from alignment at H-paniculata_contig384:10313..14253+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGAGGGGGAGCAGGGGGCGGCTCCTCGAAGAAGGGCATGAGAGATGTT
ATGGCTAAGTTTAAGAAGGGACGGAAGTTCGGACGCAAGGTGTCTGATGC
GGAGGCGTCGGTGGTTCCGGAGGCGGCGGTTGTGATGGTGGGGATCGGGA
AGACTGAGAGTGAAACTCAGACGGTGAGAGATTTCTTTTTCCCTGAAGGA
GGGGGGGGAGGGGGGTGGTAAAATAAACCCCATCGTTCATCCACTGAGAT
TATTACTCAATTCAACCAACTTGCGACACAGCATTCAAGAGAACTAAGCA
ACAACGCTCCATCGTATCCATGTTGAGGTGATGCAGATAACGTCAAAGTT
CAGCTGACCAATAAAAGGGGAGGGAGGTACTACTGTTTCGCATGCCGTTA
TGGTTAGAGCATTGGCCACGCGCGTCTTCGAGAGGGGGGGGGAGGGGAGT
GTACGTACAGCTGTGCTGCGTGTTGGTGGCAACGGCCAGTCTGGAACATG
ATTGCGTAATATAATGCCATTTTACCCAATATTACGATCGTTTCAGTCAG
GCAATGGCTTATTGGAGGGCTTTTGAATGTCCCCGGCACCGTCCCGCCAA
CCTCAGCTTGGTATCGAATCAGCAGCTGCATCGTTCTGTATTGCAGCGGC
CCCTCCTCAAATCAGTTTGGTGGTAGGCCACTGAAAACCGTTTTTTTTTT
TTTCGGCGCTTAATGCCGACAATGATACTAGGTCGCAGCTATTCTCCCCT
CTGGTAGCTAGCTGCTGCGTGCATATCATTTTGTTTTAGAAAAGAAGAAT
TGTTGATGGGGAAGGTGCAGTACGAAATGACCGCAGTAAGTGAGTGTATG
CCAGGGGTCTGTAGTATGCGCTGCCCGTACAGGTGATTGATAGTACCTTA
ACCCGATCGCCAACTCCATGCTCTTTGATGTGTTTGATTACTAGCGCTTT
TATGCTCATGTTGCACGTGTGGAGTTCTTGTCACTATTTGCACTTTTTCG
CTACCACTATACTTTCCTTGGCTCCCTTCGGGAAAACGAACAACCGGCTG
CTGTTGTAGGTGCTTCGCGTGACGATCCTTGAAGCCGAGGGGCTTCGAAA
TGTGGCAGTGCTGAAGAAGACAGATTCTTATGTAACTGCGCATCTCGCTA
CGAGGACGGGGATTCGAGAGGAACGGACGTCTGTGAAGAAGGTGCGATGG
AACAAACCACTTTTGGTGTGCGTTTTCGTGTTTTGAGTGTTTTTTATTCA
GCCTGTTTTGATGGTTCACTGGTTGGTTGGTTGGTTAGTTGGTCGGTTAG
TTGGTTGGTCGGTTAGTTGGTTGGTCGGTTAGTTGGTTGGTCGGTTAGTT
GGTTGGTCGGTTAGTTGGTTGGTTGATTCTTGATGGTAGTGTAGGGTATA
GAAGTAGGGTAGCACGTGTTTGTTTTATATTAGTTTGTGGGATTTTCGTT
CGGTGTTGGTTGCAAGTATTGTAGTGGGGTTGGTCGATTAAATATTCACC
ACAGTTTCGGATTGTCAAGTACGATCTTTATTTATATTTTGGTGTTTTAG
TTGCCCTGGTGCATGACGATTGGTTTTTGAAAAAGCGGTGTTGCTCTAAC
GCGCTGCCCGGCGTTATTTGCCGATTGCTGTTTGGGGTTCGGTTGGGTTG
GAACTTTTCGTCGTAAGGCTTACGTCAGAAACGCCTCGGGTGGAATATTT
TGTGGCCAAGGTGTCTGTTGACTCCTTAAGATAATATAATCATTATCTAG
TCCTACGTTATATCGGGTTACCCCACTTTTCGCCGCAAGATACCCTCAAT
TTTGGATTGAAAGCCGACTATCGTGAAAGCAAGCAGCCACCTACACGTAC
ATATCTGGAATCGGGAAGTTAAAGAAAGCCACGCAGTCATCATGTTTGTT
AAGAGCTACACATGAGTGTTATGCTCCAAATGTGACTGGATCCGTCAACC
CGACGGTAGGGCGAGCCTAACCAGAGATGATGTATTTAAAAGAGGCATAT
GCTGATCACGGATTGGAGAGTTCTGACCAATGGACCCGTTCTCGCTGCGG
CAGTTCCTGGCGGTGTAGAGTTGTACACGCTGTAGACTAGAGGAAAATCG
ACTTTTGATGTGAAAAATACGGGGCAAATGCCGTCCATACCCTAACAAAA
TCGATCACATTTTAGGAGGTGGAACTGGTATGATCTCGATTGCAGTATAG
ATGGTCCAGAGCTGAAATAAAGGAATCAATAAGAATATTCATGATCAGCT
GATATTGGGGGTGGATACCCACTGGATCACTCTTCTTGTGACAGACCTGA
ATGTAGGTCGACATACCCCCCCCCCCCCCTAGTTTGTTTCAGTTTGTGGA
TAATAACCACGTAATTCAGCAGATTAAAGATGCTGAGCATACATTTTTTT
TTCGTACGGTCATTATCACGTTTTGATATAACTTTCCCCATTTTTCACAC
CATCACTTGTATCAGGAATGTACGTCTTTTTTTCCTAACGGTCTTGTCAT
GGTATCGATACTGTCCAGCTGGTGAGGATGTCCTCAGTAATTAGCGCAAG
TAGTGATGTCACAATGTTCTACTTGGTAGATTTTTTGCTCCTGTATGAGG
TGCACTGCTGCATGTTGTTGCTGTCACGCATCACCCCCCCCCCTCCCCCC
CCGTCCTTTCCGATGTATCGTAATCATTATGAAAAATAATTAAATAGGGT
ATTTTGATACTATCCATATTTTTGTGTTCTTTCGGGTGCGATAATTGATA
TCGAACGATAAATGTTGTATCACAAATATCGTATCGAAATATCAACGGAA
TATGACGGTACTGCCATTGCACAAGGTATCGCGCGCGCGACAAATAGCGA
ATGCAGATATCATCTCATGCGATACAGTACGGTAAGATTTTTCAACAATG
ATCTCGTGGTGCCCTGCCACGCAGCTCGTCTTAAACACACAGACCACCGC
TTGCTGGAGTTACCGACGTCTTGAAATAATCCCACACATGGGCTAACTGG
CTGACCCATCGTGTGAACGCCTATTTTACGCGCGTGAATTGAAACGACTA
TTCCTCCACTGCCCCCCGAAAAACAAACAAGCCTCTGATTATACCGTATG
TTCTGCAATAATAATGTTCCGCACCCGCTCCGCTCCATGTATTGTTTTTC
CCAACGAAAACACAGAATACGTGCGATCCAAAGTGGAACGAGCCGCTGTC
GTTCATCGTCCCGACGGGAACGCTGGTGGACGCGCAGCTGTTTATGAGGG
TTATGGGGAAGCAAAAGATGAGGGATGATATAATGCTCGGCCGCGTGGAG
CTGCCGTTGGCAGGAATCACCAACGCTGCTGCGACAGTGGGAAAAAATCG
AGGCGACGTTGGCGGGGCAAGGGGAAAGCAAACTGCCGAGGGGGGAAGGT
GGTTTGCCTTGGAGGAGGGGCAGGGCCGGCTTAGGATTGACGCGGACTTG
GTGACAAAGAAGCCATCTCTCATCGTGTGAAAGTAAACAGAGACACGACG
GGGACAAAAAGCAAAGGCAAAAAAAAGGGAAACCAAGTGGAGCTGAGCGG
AGCCCAAGAGAACCGAAGCAAGCAAAACCTTACAAAGAGTTGCTTGCTTG
CTGTTTTTGATACGTATCTTGATCAAGTGCGTTCGTGTTTTGGTAGTTCC
GTATTTTGGCGGGAGGCGTTTTCTTGAAACGGCGACCAACTTTGTGAAGA
TTAAGGATCATTGTTTTTTTAAACGCGCCCCGCTTTCGCGTAGTATGATG
GCGCTTTTTTTGCGGAAGGGATAACCCGTGGATGGTGTGGTGGTGATATC
CTGTAGGTAGATCTTGCCACGCGGTTTCTAGCGGAAGTAGTGGAGGGCGC
AGGGTAATTACTAAAATGTACCCATGATCTGGTTATGCAGCTGACTTCAA
TCTTGACTTGTATTCACTTATCAGCAAAGTTAAATCATGAC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig384:10313..14253+

>mRNA_H-paniculata_contig384.10056.1 ID=mRNA_H-paniculata_contig384.10056.1|Name=mRNA_H-paniculata_contig384.10056.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1164bp|location=Sequence derived from alignment at H-paniculata_contig384:10313..14253+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGAGATGTTATGGCTAAGTTTAAGAAGGGACGGAAGTTCGGACGCAA
GGTGTCTGATGCGGAGGCGTCGGTGGTTCCGGAGGCGGCGGTTGTGATGG
TGGGGATCGGGAAGACTGAGAGTGAAACTCAGACGATGAGAGATGTTATG
GCTAAGTTTAAGAAGGGACGGAAGTTCGGACGCAAGGTGTCTGATGCGGA
GGCGTCGGTGGTTCCGGAGGCGGCGGTTGTGATGGTGGGGATCGGGAAGA
CTGAGAGTGAAACTCAGACGGTGCTTCGCGTGACGATCCTTGAAGCCGAG
GGGCTTCGAAATGTGGCAGTGCTGAAGAAGACAGATTCTTATGTAACTGC
GCATCTCGCTACGAGGACGGGGATTCGAGAGGAACGGACGTCTGTGAAGA
AGGTGCTTCGCGTGACGATCCTTGAAGCCGAGGGGCTTCGAAATGTGGCA
GTGCTGAAGAAGACAGATTCTTATGTAACTGCGCATCTCGCTACGAGGAC
GGGGATTCGAGAGGAACGGACGTCTGTGAAGAAGAATACGTGCGATCCAA
AGTGGAACGAGCCGCTGTCGTTCATCGTCCCGACGGGAACGCTGGTGGAC
GCGCAGCTGTTTATGAGGGTTATGGGGAAGCAAAAGATGAGGGATGATAT
AATGCTCGGCCGCGTGGAGCTGCCGTTGGCAGGAATCACCAACGCTGCTG
CGACAGTGGGAAAAAATCGAGGCGACGTTGGCGGGGCAAGGGGAAAGCAA
ACTGCCGAGGGGGGAAGGTGGTTTGCCTTGGAGGAGGGGCAGGGCCGGCT
TAGGATTGACGCGGACTTGGTGACAAAGAAGCCATCTCTCATCGTGTGAA
ATACGTGCGATCCAAAGTGGAACGAGCCGCTGTCGTTCATCGTCCCGACG
GGAACGCTGGTGGACGCGCAGCTGTTTATGAGGGTTATGGGGAAGCAAAA
GATGAGGGATGATATAATGCTCGGCCGCGTGGAGCTGCCGTTGGCAGGAA
TCACCAACGCTGCTGCGACAGTGGGAAAAAATCGAGGCGACGTTGGCGGG
GCAAGGGGAAAGCAAACTGCCGAGGGGGGAAGGTGGTTTGCCTTGGAGGA
GGGGCAGGGCCGGCTTAGGATTGACGCGGACTTGGTGACAAAGAAGCCAT
CTCTCATCGTGTGA
back to top