mRNA_H-paniculata_contig38327.10042.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig38327.10042.1
Unique NamemRNA_H-paniculata_contig38327.10042.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig38327.10042.1 vs. uniprot
Match: A0A6H5KS43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS43_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 3.180e-19
Identity = 36/62 (58.06%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:    4 HKRGVGAASRTNFHYHFRLEGYPPQLGIWRHVRAVPQCRDLIESYRSRAPLKDASSFDPPQR 189
            HKRGVGAAS  NF YH +L+ Y  QLG+WRH RA+PQC ++I SYR+    +D S+F PP+R
Sbjct:   52 HKRGVGAASLDNFQYHLKLKDYSSQLGLWRHYRAIPQCAEMIASYRAEILSQDPSAFSPPRR 113
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BLAST of mRNA_H-paniculata_contig38327.10042.1 vs. uniprot
Match: A0A6H5K112_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K112_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 4.460e-17
Identity = 36/62 (58.06%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:    4 HKRGVGAASRTNFHYHFRLEGYPPQLGIWRHVRAVPQCRDLIESYRSRAPLKDASSFDPPQR 189
            HKRGVGAAS  NF YH +L+ Y  QLG+WRH RA+PQC ++I SYR+    +D S+F PP+R
Sbjct: 1118 HKRGVGAASLDNFQYHLKLKDYSSQLGLWRHYRAIPQCAEMIASYRAEILSQDPSAFSPPRR 1179
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig38327.10042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KS43_9PHAE3.180e-1958.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K112_9PHAE4.460e-1758.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig38327contigH-paniculata_contig38327:1609..2046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size390
Cds size390
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930178.4395218-CDS-H-paniculata_contig38327:1608..18001622930178.4395218-CDS-H-paniculata_contig38327:1608..1800Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38327 1609..1800 -
1691481179.147083-CDS-H-paniculata_contig38327:1608..18001691481179.147083-CDS-H-paniculata_contig38327:1608..1800Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38327 1609..1800 -
1622930178.4537773-CDS-H-paniculata_contig38327:1848..20461622930178.4537773-CDS-H-paniculata_contig38327:1848..2046Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38327 1849..2046 -
1691481179.1591647-CDS-H-paniculata_contig38327:1848..20461691481179.1591647-CDS-H-paniculata_contig38327:1848..2046Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38327 1849..2046 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig38327.10042.1prot_H-paniculata_contig38327.10042.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig38327 1609..2046 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig38327.10042.1

>prot_H-paniculata_contig38327.10042.1 ID=prot_H-paniculata_contig38327.10042.1|Name=mRNA_H-paniculata_contig38327.10042.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=130bp
AHKRGVGAASRTNFHYHFRLEGYPPQLGIWRHVRAVPQCRDLIESYRSRA
PLKDASSFDPPQRKSITYPHFRHRQPPIVPPGVLWLSPAVTLALLNARMF
SERSRCAPSERRHRFFLPVAFPFPRSRVSY
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mRNA from alignment at H-paniculata_contig38327:1609..2046-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig38327.10042.1 ID=mRNA_H-paniculata_contig38327.10042.1|Name=mRNA_H-paniculata_contig38327.10042.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=438bp|location=Sequence derived from alignment at H-paniculata_contig38327:1609..2046- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCCATAAACGGGGGGTAGGCGCGGCATCTCGTACGAACTTTCACTATCA
CTTCCGGCTTGAAGGATATCCTCCTCAGCTAGGTATTTGGCGCCACGTAC
GAGCCGTTCCACAATGCCGCGACCTCATCGAGTCCTACCGTTCTCGTGCG
CCATTGAAGGATGCTTCGTCCTTCGATCCCCCACAGCGGAAATCTATCGT
TTGTACCGCTGCTCGTTGACACCGTTTCACGTTTTTCGTAAGATAGACCT
ATCCCCACTTTCGGCATAGGCAACCGCCGATCGTTCCGCCCGGTGTCTTA
TGGCTATCACCCGCCGTTACCCTGGCCTTACTTAATGCTAGGATGTTTAG
TGAACGTAGTCGATGCGCGCCGAGTGAGCGGCGACATAGATTTTTCCTTC
CCGTGGCTTTTCCGTTTCCCCGTTCCCGTGTCTCGTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig38327:1609..2046-

>mRNA_H-paniculata_contig38327.10042.1 ID=mRNA_H-paniculata_contig38327.10042.1|Name=mRNA_H-paniculata_contig38327.10042.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=780bp|location=Sequence derived from alignment at H-paniculata_contig38327:1609..2046- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCCATAAACGGGGGGTAGGCGCGGCATCTCGTACGAACTTTCACTATCA
CTTCCGGCTTGAAGGATATCCTCCTCAGCTAGGTATTTGGCGCCACGTAC
GAGCCGTTCCACAATGCCGCGACCTCATCGAGTCCTACCGTTCTCGTGCG
CCATTGAAGGATGCTTCGTCCTTCGATCCCCCACAGCGGAAATCTATCGC
CCATAAACGGGGGGTAGGCGCGGCATCTCGTACGAACTTTCACTATCACT
TCCGGCTTGAAGGATATCCTCCTCAGCTAGGTATTTGGCGCCACGTACGA
GCCGTTCCACAATGCCGCGACCTCATCGAGTCCTACCGTTCTCGTGCGCC
ATTGAAGGATGCTTCGTCCTTCGATCCCCCACAGCGGAAATCTATCACCT
ATCCCCACTTTCGGCATAGGCAACCGCCGATCGTTCCGCCCGGTGTCTTA
TGGCTATCACCCGCCGTTACCCTGGCCTTACTTAATGCTAGGATGTTTAG
TGAACGTAGTCGATGCGCGCCGAGTGAGCGGCGACATAGATTTTTCCTTC
CCGTGGCTTTTCCGTTTCCCCGTTCCCGTGTCTCGTACACCTATCCCCAC
TTTCGGCATAGGCAACCGCCGATCGTTCCGCCCGGTGTCTTATGGCTATC
ACCCGCCGTTACCCTGGCCTTACTTAATGCTAGGATGTTTAGTGAACGTA
GTCGATGCGCGCCGAGTGAGCGGCGACATAGATTTTTCCTTCCCGTGGCT
TTTCCGTTTCCCCGTTCCCGTGTCTCGTAC
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