mRNA_H-paniculata_contig3806.9982.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3806.9982.1
Unique NamemRNA_H-paniculata_contig3806.9982.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3806.9982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3806contigH-paniculata_contig3806:14956..15333 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size380
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930169.717264-CDS-H-paniculata_contig3806:14955..153331622930169.717264-CDS-H-paniculata_contig3806:14955..15333Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3806 14956..15333 +
1691481175.381443-CDS-H-paniculata_contig3806:14955..153331691481175.381443-CDS-H-paniculata_contig3806:14955..15333Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3806 14956..15333 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3806.9982.1prot_H-paniculata_contig3806.9982.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3806 14956..15333 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3806.9982.1

>prot_H-paniculata_contig3806.9982.1 ID=prot_H-paniculata_contig3806.9982.1|Name=mRNA_H-paniculata_contig3806.9982.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
RGGGVSGARVYDERNAPLNGGNDGMHNSAANRYTGFGSSNDDDTGQQQQQ
RGMLLSARGVAESNPPPMSVSSIGSGGSIPSGGNIQDTQKMQVSSTMHAP
CRRPSPGRTSCRDSEAYSVGGESSCG
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mRNA from alignment at H-paniculata_contig3806:14956..15333+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3806.9982.1 ID=mRNA_H-paniculata_contig3806.9982.1|Name=mRNA_H-paniculata_contig3806.9982.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=378bp|location=Sequence derived from alignment at H-paniculata_contig3806:14956..15333+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAGGAGGAGGAGTGAGCGGAGCCCGAGTATATGACGAGAGAAATGCTCC
CTTGAACGGTGGAAACGACGGTATGCATAACTCTGCCGCCAACCGCTACA
CAGGTTTCGGCAGCAGCAACGACGACGACACCGGGCAGCAACAACAGCAA
CGCGGCATGCTGCTGTCCGCCCGAGGTGTCGCCGAATCGAACCCACCACC
GATGAGCGTCAGTAGCATTGGCAGCGGCGGCAGTATCCCGAGTGGGGGGA
ACATTCAAGATACACAGAAGATGCAGGTATCATCAACCATGCATGCACCC
TGCCGCAGGCCAAGCCCCGGACGGACTTCCTGTCGGGATTCGGAGGCATA
CAGCGTGGGAGGGGAGAGTAGCTGCGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig3806:14956..15333+

>mRNA_H-paniculata_contig3806.9982.1 ID=mRNA_H-paniculata_contig3806.9982.1|Name=mRNA_H-paniculata_contig3806.9982.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig3806:14956..15333+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAGGAGGAGGAGTGAGCGGAGCCCGAGTATATGACGAGAGAAATGCTCC
CTTGAACGGTGGAAACGACGGTATGCATAACTCTGCCGCCAACCGCTACA
CAGGTTTCGGCAGCAGCAACGACGACGACACCGGGCAGCAACAACAGCAA
CGCGGCATGCTGCTGTCCGCCCGAGGTGTCGCCGAATCGAACCCACCACC
GATGAGCGTCAGTAGCATTGGCAGCGGCGGCAGTATCCCGAGTGGGGGGA
ACATTCAAGATACACAGAAGATGCAGGTATCATCAACCATGCATGCACCC
TGCCGCAGGCCAAGCCCCGGACGGACTTCCTGTCGGGATTCGGAGGCATA
CAGCGTGGGAGGGGAGAGTAGCTGCGGCAGAGGAGGAGGAGTGAGCGGAG
CCCGAGTATATGACGAGAGAAATGCTCCCTTGAACGGTGGAAACGACGGT
ATGCATAACTCTGCCGCCAACCGCTACACAGGTTTCGGCAGCAGCAACGA
CGACGACACCGGGCAGCAACAACAGCAACGCGGCATGCTGCTGTCCGCCC
GAGGTGTCGCCGAATCGAACCCACCACCGATGAGCGTCAGTAGCATTGGC
AGCGGCGGCAGTATCCCGAGTGGGGGGAACATTCAAGATACACAGAAGAT
GCAGGTATCATCAACCATGCATGCACCCTGCCGCAGGCCAAGCCCCGGAC
GGACTTCCTGTCGGGATTCGGAGGCATACAGCGTGGGAGGGGAGAGTAGC
TGCGGC
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