mRNA_H-paniculata_contig38001.9970.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig38001.9970.1
Unique Name	mRNA_H-paniculata_contig38001.9970.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig38001.9970.1 vs. uniprot
Match: D7FSG8_ECTSI (SF-assemblin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSG8_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 2.400e-40
Identity = 73/80 (91.25%), Postives = 79/80 (98.75%), Query Frame = 1

Query:    7 TSRESTYADLRRVLDENVRSRMKGDEKFQSFVHEELANLRNAVSLERQTRERDDGEIVDALNRYTSKLQSSLKIINSAEI 246
            TSRE+TYADLRR+LDENVRSRMKGDEKFQSFV EELA+L++AVSLERQTRERDDGEIVDALNRYTSKLQSSLKIINS+EI
Sbjct:  191 TSRENTYADLRRILDENVRSRMKGDEKFQSFVREELADLKSAVSLERQTRERDDGEIVDALNRYTSKLQSSLKIINSSEI 270

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BLAST of mRNA_H-paniculata_contig38001.9970.1 vs. uniprot
Match: A0A7R9UAS1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAS1_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 2.030e-20
Identity = 50/80 (62.50%), Postives = 56/80 (70.00%), Query Frame = 1

Query:    7 TSRESTYADLRRVLDENVRSRMKGDEKFQSFVHEELANLRNAVSLERQTRERDDGEIVDALNRYTSKLQSSLKIINSAEI 246
            TSRE+    LR   +ENVR R K DE    FV EELA L+NAVS E   RER+D EIVDALNRYT KLQ SL+IINS +I
Sbjct:  228 TSRENAVTALRTAFEENVRVRAKADEDLHRFVQEELAALKNAVSAEAVVREREDDEIVDALNRYTRKLQDSLQIINSPDI 307

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BLAST of mRNA_H-paniculata_contig38001.9970.1 vs. uniprot
Match: A0A7S1CKK5_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CKK5_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 3.800e-20
Identity = 44/77 (57.14%), Postives = 59/77 (76.62%), Query Frame = 1

Query:   13 RESTYADLRRVLDENVRSRMKGDEKFQSFVHEELANLRNAVSLERQTRERDDGEIVDALNRYTSKLQSSLKIINSAE 243
            RE  Y +L+  LD+ VR+R K DEKFQ FV EE+A +RNA+  E + RE++D EIV+ LNRYT KLQ+SL+IINS++
Sbjct:  204 REKVYLELKTKLDDAVRTRTKADEKFQGFVSEEIAAIRNAIRKEEELREQEDDEIVETLNRYTQKLQASLQIINSSD 280

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BLAST of mRNA_H-paniculata_contig38001.9970.1 vs. uniprot
Match: A0A2P4YHF8_9STRA (SF-assemblin n=4 Tax=Phytophthora TaxID=4783 RepID=A0A2P4YHF8_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 7.350e-18
Identity = 39/77 (50.65%), Postives = 57/77 (74.03%), Query Frame = 1

Query:   13 RESTYADLRRVLDENVRSRMKGDEKFQSFVHEELANLRNAVSLERQTRERDDGEIVDALNRYTSKLQSSLKIINSAE 243
            RE  Y++L+  LD    +R++GDE+F +F  +E+A ++NA+  E Q RER+D EIV+ALNRYT+KLQ SLK+I S +
Sbjct:  174 RELKYSELKNALDTYTATRIRGDERFHAFAQQEIAKIQNALVAEAQAREREDDEIVEALNRYTAKLQDSLKVITSPD 250

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BLAST of mRNA_H-paniculata_contig38001.9970.1 vs. uniprot
Match: D0MS97_PHYIT (SF-assemblin, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MS97_PHYIT)

HSP 1 Score: 84.3 bits (207), Expect = 7.680e-18
Identity = 40/75 (53.33%), Postives = 56/75 (74.67%), Query Frame = 1

Query:   13 RESTYADLRRVLDENVRSRMKGDEKFQSFVHEELANLRNAVSLERQTRERDDGEIVDALNRYTSKLQSSLKIINS 237
            RE  Y+ L+  LD    +R++GD++F +F  EE+AN++NA+  E Q RER+D EIV+ALNRYT+KLQ SLK+I S
Sbjct:  199 RELKYSGLKNALDAYCSTRIRGDDRFHAFAQEEIANIQNALVTEAQAREREDDEIVEALNRYTAKLQDSLKVITS 273

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BLAST of mRNA_H-paniculata_contig38001.9970.1 vs. uniprot
Match: A0A024U8I8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U8I8_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.250e-17
Identity = 41/77 (53.25%), Postives = 55/77 (71.43%), Query Frame = 1

Query:   13 RESTYADLRRVLDENVRSRMKGDEKFQSFVHEELANLRNAVSLERQTRERDDGEIVDALNRYTSKLQSSLKIINSAE 243
            RE    +L+  LD   ++R++GD KFQ    EE+A ++N +  E QTRER+D EI+DALNRYT+KLQ SLK+INS E
Sbjct:  204 REVKATELKESLDMYTKTRLRGDGKFQHLAQEEIAKIQNLLVQESQTREREDDEIIDALNRYTAKLQDSLKLINSTE 280

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BLAST of mRNA_H-paniculata_contig38001.9970.1 vs. uniprot
Match: A0A2D4CBH6_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CBH6_PYTIN)

HSP 1 Score: 84.3 bits (207), Expect = 3.510e-17
Identity = 39/72 (54.17%), Postives = 56/72 (77.78%), Query Frame = 1

Query:   13 RESTYADLRRVLDENVRSRMKGDEKFQSFVHEELANLRNAVSLERQTRERDDGEIVDALNRYTSKLQSSLKI 228
            RE  Y+DL+  LD    +R++GDEKFQ+F  E++A+++NA+  E Q RER+D EI++ALNRYT+KLQ SLK+
Sbjct:  361 RELKYSDLKNALDTYTSTRIRGDEKFQAFAQEQIASIQNALVAEAQAREREDDEIIEALNRYTAKLQDSLKM 432

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BLAST of mRNA_H-paniculata_contig38001.9970.1 vs. uniprot
Match: W4GU67_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GU67_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 4.280e-17
Identity = 41/77 (53.25%), Postives = 55/77 (71.43%), Query Frame = 1

Query:   13 RESTYADLRRVLDENVRSRMKGDEKFQSFVHEELANLRNAVSLERQTRERDDGEIVDALNRYTSKLQSSLKIINSAE 243
            RE    +L+  LD   ++R++GD KFQ    EE+A ++N +  E QTRER+D EI+DALNRYT+KLQ SLK+INS E
Sbjct:  202 REVKATELKESLDMYTKTRLRGDGKFQLVAQEEIAKIQNLLVQESQTREREDDEIIDALNRYTAKLQDSLKLINSTE 278

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BLAST of mRNA_H-paniculata_contig38001.9970.1 vs. uniprot
Match: A0A225V5R6_9STRA (SF-assemblin n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V5R6_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 5.590e-17
Identity = 39/73 (53.42%), Postives = 54/73 (73.97%), Query Frame = 1

Query:   13 RESTYADLRRVLDENVRSRMKGDEKFQSFVHEELANLRNAVSLERQTRERDDGEIVDALNRYTSKLQSSLKII 231
            RE  Y++L+  LD    +R++GDEKF +F  EE+A ++NA+  E Q RER+D EIV+ALNRYT+KLQ SLK +
Sbjct:  199 RELKYSELKNALDTYTTTRIRGDEKFHAFAQEEIAKIQNALVAEAQAREREDDEIVEALNRYTAKLQDSLKTL 271

[Close]

BLAST of mRNA_H-paniculata_contig38001.9970.1 vs. uniprot
Match: A0A6G0X288_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X288_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 5.740e-17
Identity = 39/77 (50.65%), Postives = 55/77 (71.43%), Query Frame = 1

Query:   13 RESTYADLRRVLDENVRSRMKGDEKFQSFVHEELANLRNAVSLERQTRERDDGEIVDALNRYTSKLQSSLKIINSAE 243
            RE    +L+  LD   ++R++GD KFQ    +E+ N++N +  E QTRER+D EI+DALNRYT+KLQ SLK+INS +
Sbjct:  199 REVKSTELKESLDTYTKTRLRGDNKFQLVAQQEIVNIQNLLVQESQTREREDDEIIDALNRYTAKLQDSLKLINSTD 275

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig38001.9970.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig38001.9970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FSG8_ECTSI	2.400e-40	91.25	SF-assemblin n=2 Tax=Ectocarpus TaxID=2879 RepID=D...	[more]
A0A7R9UAS1_9STRA	2.030e-20	62.50	Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi...	[more]
A0A7S1CKK5_9STRA	3.800e-20	57.14	Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20...	[more]
A0A2P4YHF8_9STRA	7.350e-18	50.65	SF-assemblin n=4 Tax=Phytophthora TaxID=4783 RepID...	[more]
D0MS97_PHYIT	7.680e-18	53.33	SF-assemblin, putative n=2 Tax=Phytophthora infest...	[more]
A0A024U8I8_9STRA	2.250e-17	53.25	Uncharacterized protein n=1 Tax=Aphanomyces invada...	[more]
A0A2D4CBH6_PYTIN	3.510e-17	54.17	Uncharacterized protein n=1 Tax=Pythium insidiosum...	[more]
W4GU67_9STRA	4.280e-17	53.25	Uncharacterized protein n=1 Tax=Aphanomyces astaci...	[more]
A0A225V5R6_9STRA	5.590e-17	53.42	SF-assemblin n=1 Tax=Phytophthora megakarya TaxID=...	[more]
A0A6G0X288_9STRA	5.740e-17	50.65	Uncharacterized protein n=1 Tax=Aphanomyces euteic...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig38001	contig	H-paniculata_contig38001:283..1888 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	142.1
Seed ortholog evalue	1.1e-31
Seed eggNOG ortholog	2880.D7FSG8
Hectar predicted targeting category	other localisation
EggNOG free text desc.	SF-assemblin/beta giardin
EggNOG OGs	28IGT@1,2QQTN@2759
Ec32 ortholog description	SF-assemblin
Ec32 ortholog	Ec-04_000810.1
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Exons	2
Model size	249
Cds size	249
Stop	1
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930168.6086402-CDS-H-paniculata_contig38001:282..342	1622930168.6086402-CDS-H-paniculata_contig38001:282..342	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig38001 283..342 -
1691481174.9203727-CDS-H-paniculata_contig38001:282..342	1691481174.9203727-CDS-H-paniculata_contig38001:282..342	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig38001 283..342 -
1622930168.6263993-CDS-H-paniculata_contig38001:1699..1888	1622930168.6263993-CDS-H-paniculata_contig38001:1699..1888	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig38001 1700..1888 -
1691481174.9302473-CDS-H-paniculata_contig38001:1699..1888	1691481174.9302473-CDS-H-paniculata_contig38001:1699..1888	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig38001 1700..1888 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig38001.9970.1	prot_H-paniculata_contig38001.9970.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig38001 283..1888 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig38001:283..1888-
coding sequence from alignment at H-paniculata_contig38001:283..1888-

protein sequence of mRNA_H-paniculata_contig38001.9970.1

>prot_H-paniculata_contig38001.9970.1 ID=prot_H-paniculata_contig38001.9970.1|Name=mRNA_H-paniculata_contig38001.9970.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
MQTSRESTYADLRRVLDENVRSRMKGDEKFQSFVHEELANLRNAVSLERQ
TRERDDGEIVDALNRYTSKLQSSLKIINSAEI*

mRNA from alignment at H-paniculata_contig38001:283..1888-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig38001.9970.1 ID=mRNA_H-paniculata_contig38001.9970.1|Name=mRNA_H-paniculata_contig38001.9970.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1606bp|location=Sequence derived from alignment at H-paniculata_contig38001:283..1888- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGACCTCTCGGGAAAGTACGTACGCGGACTTGCGACGGGTGTTGGA
CGAAAACGTCCGTTCGCGCATGAAGGGAGATGAGAAATTCCAGTCGTTTG
TGCACGAGGAGCTGGCTAACTTGAGAAACGCGGTGTCCCTCGAACGACAG
ACAAGAGAGCGAGACGACGGGGAGATCGTTGATGCACTTGTGAGTTAAAA
AAAAAAAAAATCAAGTCAAAGTTTTGCTAGTCTTTCATAAGAACGGAATT
GTACACACCTGGTACCAGGTAGAGGAAAAGTGAAAGGCTGCAGGTTAGTC
ATGGGTACATACCCAATTATCAACAAAAAAGAACCATGCCCCTGAGATCT
CGGATTAAATATATATATATATATATATATATATATCAGATTTGGAATCC
ACGTTGGAAAACTGGCGAAGTGCAATTTTCGCTTTTTTTGTTGTCTGATC
AAAGAGAGAAGTCGGGGGGCGAGGGGGGGAAATTCGTATTATATCTTCTG
AAACATACCGTTGGGCTAGGGTTGGTTAAAGTTAGTTAGGGATTTCTTAC
ATAAATTATTTTACGAAGCAGACGTGCCTGATGTGCGTCGCATGAGGGGA
TCCTATGGTCATTGACCATGATTGAAGTCACATAATGCTGCCACGAATAC
TATTATTCTACGCATGTTTGGTGCTGTGGTTGTCATCCCTGGTTCGAGAT
CTCCGTATACTTGGTCATGATTCACGTTGAGAAAGTGTTACTAGATGAAA
CATACCAGAAATATTACCGCAACAAAATTCAAAGGTTTGACTACAGTATG
ACAGAAATAGGGCACCATGTCAAGTCTTGATTCCTGTGTACGATCGCTTC
CGTAATGAAGATCCCGTGTATAATAGTGAGGTGAGTAATTTTTTCTGTTT
GATGTGAGTCTCTCGTATACTATAAGTGAATAGATAAACAGATGCTGTCG
ATGGATTTAAATTGTAGGTTTGAAAACCGTAAAAATAGCCTGCAAACAAA
GGTGTTTTTGAAAAAAGATCAAGTGTGGAGAGCACGTTCCTGACGTTCCT
AGGATTCCCGGGGTTCCTAGGGTTCCTGAACCCCTACACAACGACCAATG
GCATTTTTGCCCCTATCTCGAAACAGCTTTCTAGCTGTGTCCGACCCTCA
ATGGTCACCCGATCTCCGAAAGAACAAAATCCAAGTGCTTGCTCCACACG
GCATATCGAGAGCCAGTCTCTCCCGGGAGCATCGTGTTCTCACAAGAACA
TTTGAAGAAAAAATAGCAGTAATAAACATTGTTTGGGCGAATGTCTGAAT
GTGGAAGCAGCGGAAAAAAAAAATGGTCTGCTTTTCAAAAGAGGGAAACG
CAACGGTCGTTGAATCGATGCGCATTGGGCGGTTTCTATTTTTTTTTTTT
TTTTCATGTACACCAGGTCTTGACACAACACAATTAAAGTCCAATTTTTT
CGATTCCTTGCCCCTTGTATTGTGTTGACGTTGTTCTGCTTCGTGTCGTT
CCTCTTGGTGCTTTCCCGCTTCACTTGGTTTTGTTTCGTTCTTCAGAACC
GTTACACGTCGAAATTGCAAAGCAGTCTCAAGATCATCAACAGCGCCGAG
ATATGA

Coding sequence (CDS) from alignment at H-paniculata_contig38001:283..1888-

>mRNA_H-paniculata_contig38001.9970.1 ID=mRNA_H-paniculata_contig38001.9970.1|Name=mRNA_H-paniculata_contig38001.9970.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig38001:283..1888- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGACCTCTCGGGAAAGTACGTACGCGGACTTGCGACGGGTGTTGGA
CGAAAACGTCCGTTCGCGCATGAAGGGAGATGAGAAATTCCAGTCGTTTG
TGCACGAGGAGCTGGCTAACTTGAGAAACGCGGTGTCCCTCGAACGACAG
ACAAGAGAGCGAGACGACGGGGAGATCGTTGATGCACTTATGCAGACCTC
TCGGGAAAGTACGTACGCGGACTTGCGACGGGTGTTGGACGAAAACGTCC
GTTCGCGCATGAAGGGAGATGAGAAATTCCAGTCGTTTGTGCACGAGGAG
CTGGCTAACTTGAGAAACGCGGTGTCCCTCGAACGACAGACAAGAGAGCG
AGACGACGGGGAGATCGTTGATGCACTTAACCGTTACACGTCGAAATTGC
AAAGCAGTCTCAAGATCATCAACAGCGCCGAGATATGAAACCGTTACACG
TCGAAATTGCAAAGCAGTCTCAAGATCATCAACAGCGCCGAGATATGA