mRNA_H-paniculata_contig37981.9958.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig37981.9958.1
Unique NamemRNA_H-paniculata_contig37981.9958.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig37981.9958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig37981contigH-paniculata_contig37981:244..1165 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size258
Cds size258
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig37981.9958.1prot_H-paniculata_contig37981.9958.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig37981 244..1165 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930166.7304444-CDS-H-paniculata_contig37981:243..2901622930166.7304444-CDS-H-paniculata_contig37981:243..290Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37981 244..290 -
1691481173.97756-CDS-H-paniculata_contig37981:243..2901691481173.97756-CDS-H-paniculata_contig37981:243..290Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37981 244..290 -
1622930166.7428997-CDS-H-paniculata_contig37981:580..7621622930166.7428997-CDS-H-paniculata_contig37981:580..762Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37981 581..762 -
1691481173.9874651-CDS-H-paniculata_contig37981:580..7621691481173.9874651-CDS-H-paniculata_contig37981:580..762Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37981 581..762 -
1622930166.7581658-CDS-H-paniculata_contig37981:1136..11651622930166.7581658-CDS-H-paniculata_contig37981:1136..1165Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37981 1137..1165 -
1691481173.9981668-CDS-H-paniculata_contig37981:1136..11651691481173.9981668-CDS-H-paniculata_contig37981:1136..1165Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37981 1137..1165 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig37981.9958.1

>prot_H-paniculata_contig37981.9958.1 ID=prot_H-paniculata_contig37981.9958.1|Name=mRNA_H-paniculata_contig37981.9958.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
HHAGPARTPSGTSSTPSLSSTGDRKRANVGPKADGHRTASEVGEGLQSAT
PLTATPATASSTSMTSPSPPEPFPEIPPHLRKYCVR
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mRNA from alignment at H-paniculata_contig37981:244..1165-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig37981.9958.1 ID=mRNA_H-paniculata_contig37981.9958.1|Name=mRNA_H-paniculata_contig37981.9958.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=922bp|location=Sequence derived from alignment at H-paniculata_contig37981:244..1165- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATCACGCCGGCCCTGCACGGACGCCTAGGTAAGGTTACTCGGTGATGTA
AGGACGGTGTGGTATAAGGCGAATTTCCCGCTCGGACTCCGGTACATGCT
GGTTCGTCGTGTCGCGTTCGAGCGGTGCCGTCTAGTAGGGCGAAGATAGT
GGCAAATGCAGTATCTCTCCGACGAACGAACAAGAGAGAGTGAACCCAAT
ATCCTGTGTGGATTTACCGTCCGGACGTCAGGTGGTAGGGAGTCCCGAAG
AGAGACACGGCAGAATAATATAGGACGGAAATCGCAGATACCGTGTGTCC
CGCTAAATTCCCGGATGCAAGACCCAACATCACCCGTATACCCCCGCTCT
CGTTGCCGTCCGATTTTCCGTAATTGTTTCATACACTCGGTGTCCGACGT
CAGCGGGACCTCGTCGACTCCGAGTCTTTCGTCGACGGGGGACCGCAAGC
GAGCAAATGTTGGTCCCAAGGCCGACGGTCACCGGACGGCGAGCGAGGTC
GGCGAGGGTCTCCAGTCGGCGACTCCTCTCACCGCCACGCCGGCAACCGC
GAGCAGCACTTCCATGACCTCTCCATCACCGCCAGGTGCGTACGGAACCG
CCAGCGCTACTCGCAATCGACGCGTCAACAACGTGCAGCATATCCCAAAC
AAAGATGTAGTAGCAGTGTCGGGCCATCTTCGTGCAGTGGCTCTAGGTGT
TTGTGCTCCGACGTGGCTGCATGTATGTACACGTAGAAACGTCGCACACA
CTCACGATATGCCTCAAGTCGTTATGATTAATATTCGTATCCTCGCTTTT
CCCCCGCGCCTCGCCGCCCCGCCCCCGTCGTCTCGCCTGTCTTCGGACAA
CTAACACGCCTCCACCTTTCTTTAGAGCCCTTCCCCGAGATTCCGCCTCA
CCTCCGCAAATACTGCGTGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig37981:244..1165-

>mRNA_H-paniculata_contig37981.9958.1 ID=mRNA_H-paniculata_contig37981.9958.1|Name=mRNA_H-paniculata_contig37981.9958.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig37981:244..1165- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATCACGCCGGCCCTGCACGGACGCCTAGCATCACGCCGGCCCTGCACGG
ACGCCTAGCGGGACCTCGTCGACTCCGAGTCTTTCGTCGACGGGGGACCG
CAAGCGAGCAAATGTTGGTCCCAAGGCCGACGGTCACCGGACGGCGAGCG
AGGTCGGCGAGGGTCTCCAGTCGGCGACTCCTCTCACCGCCACGCCGGCA
ACCGCGAGCAGCACTTCCATGACCTCTCCATCACCGCCAGCGGGACCTCG
TCGACTCCGAGTCTTTCGTCGACGGGGGACCGCAAGCGAGCAAATGTTGG
TCCCAAGGCCGACGGTCACCGGACGGCGAGCGAGGTCGGCGAGGGTCTCC
AGTCGGCGACTCCTCTCACCGCCACGCCGGCAACCGCGAGCAGCACTTCC
ATGACCTCTCCATCACCGCCAGAGCCCTTCCCCGAGATTCCGCCTCACCT
CCGCAAATACTGCGTGAGGAGCCCTTCCCCGAGATTCCGCCTCACCTCCG
CAAATACTGCGTGAGG
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