mRNA_H-paniculata_contig37905.9947.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig37905.9947.1
Unique NamemRNA_H-paniculata_contig37905.9947.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig37905.9947.1 vs. uniprot
Match: D7G6Q1_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q1_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 4.280e-6
Identity = 29/98 (29.59%), Postives = 49/98 (50.00%), Query Frame = 1 
Query:    1 EKLHNTKMRSGDDPDDFFYIMDGYRDRLEEMDQPVPDERYEGIILRALPTEYERVRTTSYEKREFHLEDIRYMVHTMYTDYLSRPNDSNSVAGRGVAM 294
            EKL NT M  G +PDD+F      R ++E+M + + D  ++ + +     EY+ V+   +    F++  ++  +H M  D  SR      +AGRG  M
Sbjct:    2 EKLDNTSMEPGQNPDDYFNHKHLLRHKVEKMGEKISDRYFKDMCVTGFTHEYKNVKMIMHRDPNFNVNHMQTTMHHMALDEQSRKGSKGGIAGRGFPM 99
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig37905.9947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6Q1_ECTSI4.280e-629.59CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig37905contigH-paniculata_contig37905:57..635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size581
Cds size558
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930164.0050504-UTR-H-paniculata_contig37905:56..771622930164.0050504-UTR-H-paniculata_contig37905:56..77Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig37905 57..77 +
1691481173.3682656-UTR-H-paniculata_contig37905:56..771691481173.3682656-UTR-H-paniculata_contig37905:56..77Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig37905 57..77 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930164.294327-CDS-H-paniculata_contig37905:77..6351622930164.294327-CDS-H-paniculata_contig37905:77..635Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37905 78..635 +
1691481173.3781831-CDS-H-paniculata_contig37905:77..6351691481173.3781831-CDS-H-paniculata_contig37905:77..635Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37905 78..635 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig37905.9947.1prot_H-paniculata_contig37905.9947.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig37905 78..635 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig37905.9947.1

>prot_H-paniculata_contig37905.9947.1 ID=prot_H-paniculata_contig37905.9947.1|Name=mRNA_H-paniculata_contig37905.9947.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=186bp
MRSGDDPDDFFYIMDGYRDRLEEMDQPVPDERYEGIILRALPTEYERVRT
TSYEKREFHLEDIRYMVHTMYTDYLSRPNDSNSVAGRGVAMQASGEMTAT
KVRGANTAGTMATSKSTVPPGKQPNKETKRRSAGAMGEMQNRSGARSTCR
QPIATRHVASYRSRGATTEVRTTLVGRATPSSSAQV
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mRNA from alignment at H-paniculata_contig37905:57..635+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig37905.9947.1 ID=mRNA_H-paniculata_contig37905.9947.1|Name=mRNA_H-paniculata_contig37905.9947.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=579bp|location=Sequence derived from alignment at H-paniculata_contig37905:57..635+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGAAGCTTCACAATACCAAAATGCGCTCCGGAGATGATCCGGATGATTT
TTTCTATATCATGGACGGCTATCGTGACCGTCTAGAAGAAATGGATCAGC
CAGTGCCGGACGAGCGGTACGAGGGCATCATCCTTCGGGCCCTTCCTACT
GAGTATGAGCGTGTTCGCACTACCAGCTACGAGAAGCGGGAATTTCATCT
GGAGGACATCCGATACATGGTTCATACCATGTACACGGACTATCTTTCCC
GTCCAAACGACTCCAACTCGGTTGCAGGTCGTGGTGTCGCCATGCAGGCG
AGCGGGGAGATGACAGCAACAAAAGTAAGAGGTGCTAATACTGCGGGAAC
CATGGCCACCTCAAAATCAACTGTGCCGCCTGGAAAGCAGCCCAACAAGG
AAACAAAAAGGAGGAGCGCGGGAGCAATGGGGGAGATGCAAAACCGCAGT
GGTGCTCGCTCCACATGTCGACAACCCATAGCGACGAGACATGTCGCGTC
CTACAGAAGCAGAGGAGCAACAACGGAAGTTCGAACTACGCTGGTTGGCC
GGGCTACCCCGTCGTCCTCGGCGCAAGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig37905:57..635+

>mRNA_H-paniculata_contig37905.9947.1 ID=mRNA_H-paniculata_contig37905.9947.1|Name=mRNA_H-paniculata_contig37905.9947.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1116bp|location=Sequence derived from alignment at H-paniculata_contig37905:57..635+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCTCCGGAGATGATCCGGATGATTTTTTCTATATCATGGACGGCTA
TCGTGACCGTCTAGAAGAAATGGATCAGCCAGTGCCGGACGAGCGGTACG
AGGGCATCATCCTTCGGGCCCTTCCTACTGAGTATGAGCGTGTTCGCACT
ACCAGCTACGAGAAGCGGGAATTTCATCTGGAGGACATCCGATACATGGT
TCATACCATGTACACGGACTATCTTTCCCGTCCAAACGACTCCAACTCGG
TTGCAGGTCGTGGTGTCGCCATGCAGGCGAGCGGGGAGATGACAGCAACA
AAAGTAAGAGGTGCTAATACTGCGGGAACCATGGCCACCTCAAAATCAAC
TGTGCCGCCTGGAAAGCAGCCCAACAAGGAAACAAAAAGGAGGAGCGCGG
GAGCAATGGGGGAGATGCAAAACCGCAGTGGTGCTCGCTCCACATGTCGA
CAACCCATAGCGACGAGACATGTCGCGTCCTACAGAAGCAGAGGAGCAAC
AACGGAAGTTCGAACTACGCTGGTTGGCCGGGCTACCCCGTCGTCCTCGG
CGCAAGTGATGCGCTCCGGAGATGATCCGGATGATTTTTTCTATATCATG
GACGGCTATCGTGACCGTCTAGAAGAAATGGATCAGCCAGTGCCGGACGA
GCGGTACGAGGGCATCATCCTTCGGGCCCTTCCTACTGAGTATGAGCGTG
TTCGCACTACCAGCTACGAGAAGCGGGAATTTCATCTGGAGGACATCCGA
TACATGGTTCATACCATGTACACGGACTATCTTTCCCGTCCAAACGACTC
CAACTCGGTTGCAGGTCGTGGTGTCGCCATGCAGGCGAGCGGGGAGATGA
CAGCAACAAAAGTAAGAGGTGCTAATACTGCGGGAACCATGGCCACCTCA
AAATCAACTGTGCCGCCTGGAAAGCAGCCCAACAAGGAAACAAAAAGGAG
GAGCGCGGGAGCAATGGGGGAGATGCAAAACCGCAGTGGTGCTCGCTCCA
CATGTCGACAACCCATAGCGACGAGACATGTCGCGTCCTACAGAAGCAGA
GGAGCAACAACGGAAGTTCGAACTACGCTGGTTGGCCGGGCTACCCCGTC
GTCCTCGGCGCAAGTG
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