mRNA_H-paniculata_contig37903.9946.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig37903.9946.1
Unique NamemRNA_H-paniculata_contig37903.9946.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig37903.9946.1 vs. uniprot
Match: A0A6H5L1I2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1I2_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.170e-10
Identity = 37/58 (63.79%), Postives = 39/58 (67.24%), Query Frame = -1 
Query:   22 LSEETQQGESARVATELPPPPVPATGTTASSDATTVPAWRSQTSSGVERLQNEGVDVD 195
             SEE +QG    VA  LPPPPVP  GT AS DATT PAWRSQ+  GV  L  EGVDVD
Sbjct:  295 FSEEQKQGRGDAVAEALPPPPVPVQGTKASPDATTAPAWRSQSMDGVASLHAEGVDVD 352
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig37903.9946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L1I2_9PHAE1.170e-1063.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig37903contigH-paniculata_contig37903:1631..1960 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size330
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930163.9718714-CDS-H-paniculata_contig37903:1630..19601622930163.9718714-CDS-H-paniculata_contig37903:1630..1960Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37903 1631..1960 +
1691481173.358227-CDS-H-paniculata_contig37903:1630..19601691481173.358227-CDS-H-paniculata_contig37903:1630..1960Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37903 1631..1960 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig37903.9946.1prot_H-paniculata_contig37903.9946.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig37903 1631..1960 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig37903.9946.1

>prot_H-paniculata_contig37903.9946.1 ID=prot_H-paniculata_contig37903.9946.1|Name=mRNA_H-paniculata_contig37903.9946.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
QTPFPSAIHVDTLILQSLYSRRCLRSPRRNRRSVGRRSCPCSGNRRRGQL
RCHPSALTLLCLLRQHCPTVDNRARTLLLTPALLLTRRCCRRATVLLLKP
CLRLSGSLRR
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mRNA from alignment at H-paniculata_contig37903:1631..1960+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig37903.9946.1 ID=mRNA_H-paniculata_contig37903.9946.1|Name=mRNA_H-paniculata_contig37903.9946.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=330bp|location=Sequence derived from alignment at H-paniculata_contig37903:1631..1960+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAACACCATTTCCCAGCGCTATCCACGTCGACACCCTCATTCTGCAGTC
TCTCTACTCCAGAAGATGTCTGAGATCTCCACGCCGGAACCGTCGTAGCG
TCGGACGACGCAGTTGTCCCTGTAGCGGGAACAGGCGGCGGGGGCAACTC
CGTTGCCACCCTAGCGCTCTCACCCTGTTGTGTCTCCTCCGACAACACTG
CCCGACCGTGGACAACCGAGCGCGCACCTTGCTGTTGACCCCCGCGCTGC
TGCTGACCCGCCGATGTTGTCGGCGCGCGACCGTCCTGCTGTTGAAGCCG
TGCCTGCGACTGAGCGGATCCTTGCGCCGC
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Coding sequence (CDS) from alignment at H-paniculata_contig37903:1631..1960+

>mRNA_H-paniculata_contig37903.9946.1 ID=mRNA_H-paniculata_contig37903.9946.1|Name=mRNA_H-paniculata_contig37903.9946.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig37903:1631..1960+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAACACCATTTCCCAGCGCTATCCACGTCGACACCCTCATTCTGCAGTC
TCTCTACTCCAGAAGATGTCTGAGATCTCCACGCCGGAACCGTCGTAGCG
TCGGACGACGCAGTTGTCCCTGTAGCGGGAACAGGCGGCGGGGGCAACTC
CGTTGCCACCCTAGCGCTCTCACCCTGTTGTGTCTCCTCCGACAACACTG
CCCGACCGTGGACAACCGAGCGCGCACCTTGCTGTTGACCCCCGCGCTGC
TGCTGACCCGCCGATGTTGTCGGCGCGCGACCGTCCTGCTGTTGAAGCCG
TGCCTGCGACTGAGCGGATCCTTGCGCCGCCAAACACCATTTCCCAGCGC
TATCCACGTCGACACCCTCATTCTGCAGTCTCTCTACTCCAGAAGATGTC
TGAGATCTCCACGCCGGAACCGTCGTAGCGTCGGACGACGCAGTTGTCCC
TGTAGCGGGAACAGGCGGCGGGGGCAACTCCGTTGCCACCCTAGCGCTCT
CACCCTGTTGTGTCTCCTCCGACAACACTGCCCGACCGTGGACAACCGAG
CGCGCACCTTGCTGTTGACCCCCGCGCTGCTGCTGACCCGCCGATGTTGT
CGGCGCGCGACCGTCCTGCTGTTGAAGCCGTGCCTGCGACTGAGCGGATC
CTTGCGCCGC
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