prot_H-paniculata_contig37829.9930.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig37829.9930.1
Unique Nameprot_H-paniculata_contig37829.9930.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length66
Homology
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BLAST of mRNA_H-paniculata_contig37829.9930.1 vs. uniprot
Match: A0A6H5L6L5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6L5_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 3.120e-6
Identity = 29/55 (52.73%), Postives = 32/55 (58.18%), Query Frame = 0 
Query:   10 DVSIEKKVVFVRNSPVTRAAFLAYLLLLHSWAIVILGYHSHHLTAKIIPDGLPGN 64
            D    K VVF+RNS V RAAFLAYLLLLH W   ++G HS  L     P    GN
Sbjct:  891 DRQTLKTVVFLRNSSVARAAFLAYLLLLHLWTFAVVGLHSSTLNHIKHPAEHSGN 945
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig37829.9930.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L6L5_9PHAE3.120e-652.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 28..47
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..27
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 48..65
NoneNo IPR availableTMHMMTMhelixcoord: 25..47

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig37829contigH-paniculata_contig37829:1426..1623 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig37829.9930.1mRNA_H-paniculata_contig37829.9930.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig37829 1306..2101 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig37829.9930.1 ID=prot_H-paniculata_contig37829.9930.1|Name=mRNA_H-paniculata_contig37829.9930.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
MCMCVWLSHDVSIEKKVVFVRNSPVTRAAFLAYLLLLHSWAIVILGYHSH
HLTAKIIPDGLPGND*
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