prot_H-paniculata_contig3779.9920.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig3779.9920.1
Unique Name	prot_H-paniculata_contig3779.9920.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	521

Homology

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BLAST of mRNA_H-paniculata_contig3779.9920.1 vs. uniprot
Match: D7G6S0_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6S0_ECTSI)

HSP 1 Score: 422 bits (1086), Expect = 1.440e-140
Identity = 296/498 (59.44%), Postives = 322/498 (64.66%), Query Frame = 0

Query:   38 YGMPQYQQAEGYGGPPPSPVVAASW-ER-GYVSGLDEGYMRPDPQGILPATGTPLASGTSGSGETGFLVSGGGANTMGAPIQSYYPPSLYGVPASMYPFPPQAGFHGQYAGGGGXXXXXXXXXXXXGAGSTAAGNFYAGQGGYARSTNPGQPIQTTTNLQGPDGCNLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDKERDRYVAAPSPTQRLMGAAGGVGPAGRVQPAPHFRQPLLPQH-AALRHHAHAQGIPGHGDGTDLMPQTPSKVGDDKPPPPSPATEGNTAFAGANAEGDLSDNQASANDVGGIEGAGDPTYSSRATGGEKYG-RANDHPHLAYIYRGRGTAQPPDE---------GVDGQEEGE---------------NAYLGAAPAASVGGTRRAASPDPKPGVPRXXXXXXXXXXXXXXXXXXXXAMPHQSLEHAMQTKLSL 507
            YG      A+GYGGPPPSPVVA SW ER GYV   +EGYMR DP  I+   GTP+AS TSG+GE  F+VS GGAN MGAP+QS+YPPSLYGVP S+YP+     F         XXXXXXXXXXXX     A GNFYAGQGGYARSTNPGQPIQTTTNLQGPDGCNLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDKER+RYV APSP  R+MG   GV  AGR+Q   HFRQPLLP H A LRHH   QG                        P                        ASA +VG   G   P  +S   GG+KYG R+NDHPHLAYIYRGRGTA   DE         GVDG+  G+               +AY+ AAPA+SVGG+  AASPDPK GV R                    A+PHQSLEHAMQTKL++
Sbjct:    5 YGQQXXXXADGYGGPPPSPVVAGSWGERTGYV---EEGYMRQDPN-IVAGAGTPIASTTSGNGEGTFMVSTGGANAMGAPMQSFYPPSLYGVPTSVYPYQQPGAFXXXXX----XXXXXXXXXXXXXXXXXAGGNFYAGQGGYARSTNPGQPIQTTTNLQGPDGCNLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDKERERYVTAPSP--RMMGP--GVA-AGRMQQTTHFRQPLLPGHNAGLRHH---QGXXXXXXXXXXX----XXXXXXXVAPGFTXXXXXXXXXXXXXXXXXXQGDASATEVGIDSG---PRGASTG-GGDKYGARSNDHPHLAYIYRGRGTA---DETGGYPSAGGGVDGKAAGDEKPQDQDSGYHGRDDSAYM-AAPASSVGGS--AASPDPK-GVSRARSSSPSAAANA--------ALPHQSLEHAMQTKLTM 463

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BLAST of mRNA_H-paniculata_contig3779.9920.1 vs. uniprot
Match: A0A6H5L5J0_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J0_9PHAE)

HSP 1 Score: 285 bits (728), Expect = 1.030e-88
Identity = 199/357 (55.74%), Postives = 218/357 (61.06%), Query Frame = 0

Query:  190 TTTNLQGPDGCNLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDKERDRYVAAPSPTQRLMGAAGGVGPAGRVQPAPHFRQPLLPQH-AALRHHAHAQGIPGHGDGTDLMPQTPSKVGDDKPPPPSPATEGNTAFAGANAEGDLSDNQASANDVGGIEGAGDPTYSSRATGGEKYG-RANDHPHLAYIYRGRGTAQPPDE---------GVDGQEEGE---------------NAYLGAAPAASVGGTRRAASPDPKPGVPRXXXXXXXXXXXXXXXXXXXXAMPHQSLEHAMQTKLSLGGSGSSPASAQPS 520
            T   L GPDGCNLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDKER+RYV APSP  R+MG   GV  AGR+Q   HFRQPLLP H A LRHH       G                    P  +                      ASA DVG   G   P  +S   GG+KYG  +NDHPHLAYIYRGRGTA   DE         GVDG+  G+               +AY+ AAP +SVGG+  AASPDPK GV R                    A+PHQSLEHAMQTKL++GG+GS P++AQPS
Sbjct:    6 TGDGLAGPDGCNLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDKERERYVTAPSP--RMMGP--GVA-AGRMQQTAHFRQPLLPAHNAGLRHHQ------GXXXXXXXXXXXXXXXXXXVAPGFTXXXXXXXXXXXXXXXXXXXQGDASATDVGIDAG---PRGASTG-GGDKYGAHSNDHPHLAYIYRGRGTAA--DETGGYPSAGGGVDGKAAGDEKPQDQDSGYHGRDDSAYM-AAPTSSVGGS--AASPDPK-GVSRARSSSPGAAANA--------ALPHQSLEHAMQTKLTIGGNGSPPSAAQPS 333

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BLAST of mRNA_H-paniculata_contig3779.9920.1 vs. uniprot
Match: A0A7S2V9D2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V9D2_9STRA)

HSP 1 Score: 148 bits (373), Expect = 6.520e-39
Identity = 74/99 (74.75%), Postives = 82/99 (82.83%), Query Frame = 0

Query:  184 PGQPIQTTTNLQGPDGCNLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDKERD 282
            PG PIQTT   QGP+GCNLFVFHIPN+MTN  L+ LF +FGNV+SARIMVEK TGRSRGFGF+SYDN  SA+ AI  MNG+QI HKRLKVQHKKDK  D
Sbjct:   41 PGAPIQTTPLGQGPEGCNLFVFHIPNSMTNVDLYHLFLRFGNVVSARIMVEKHTGRSRGFGFISYDNAVSAKDAIKGMNGFQIGHKRLKVQHKKDKTWD 139

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BLAST of mRNA_H-paniculata_contig3779.9920.1 vs. uniprot
Match: D0NCQ3_PHYIT (CUG-BP-and ETR-3-like factor, putative n=5 Tax=Phytophthora TaxID=4783 RepID=D0NCQ3_PHYIT)

HSP 1 Score: 152 bits (383), Expect = 7.680e-39
Identity = 97/207 (46.86%), Postives = 107/207 (51.69%), Query Frame = 0

Query:   73 GYMRPDPQGILPATGTPLASGTSGSGETGFLVSGGGANTMGAPIQSYYPPSLYGVPASMYPFPPQAGFHGQYAGGGGXXXXXXXXXXXXGAGSTAAGNFYAGQGGYARSTNPGQPIQTTTNLQGPDGCNLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDK 279
            G+ +P PQ               G G  G    G      G P+Q  YPP  YG    MYPFP   G+  Q  G                                     PG PIQTT + QGP GCNLFVFHIPN MTN+ LF  F+ FGNVISARIMVEK TGRSRGFGFVSYDN  SAE AI  MNG+Q+  KRLKVQHKK+K
Sbjct:   75 GFQQPQPQ-------------LGGQGAQGAAAYGAYPQPYGQPMQ--YPPP-YGGSGYMYPFPQAYGYPPQIVG-------------------------------------PGPPIQTTESGQGPPGCNLFVFHIPNDMTNQDLFNYFATFGNVISARIMVEKETGRSRGFGFVSYDNAPSAEAAIKGMNGFQVGRKRLKVQHKKEK 228

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BLAST of mRNA_H-paniculata_contig3779.9920.1 vs. uniprot
Match: A0A6A3ZKX5_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3ZKX5_9STRA)

HSP 1 Score: 149 bits (377), Expect = 6.160e-38
Identity = 93/185 (50.27%), Postives = 102/185 (55.14%), Query Frame = 0

Query:   95 SGSGETGFLVSGGGANTMGAPIQSYYPPSLYGVPASMYPFPPQAGFHGQYAGGGGXXXXXXXXXXXXGAGSTAAGNFYAGQGGYARSTNPGQPIQTTTNLQGPDGCNLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDK 279
            SG    G    G      G P+Q  YPP  YG    MYPFP   G+  Q  G                                     PG PIQTT + QGP GCNLFVFHIPN MTN+ LF  F+ FGNVISARIMVEK TGRSRGFGFVSYDN  SAE AI+ MNG+Q+  KRLKVQHKK+K
Sbjct:   86 SGQAPQGAAAYGAYPQPYGQPMQ--YPPP-YGGSGYMYPFPQAYGYPPQIVG-------------------------------------PGPPIQTTESGQGPPGCNLFVFHIPNDMTNQDLFNYFATFGNVISARIMVEKETGRSRGFGFVSYDNDASAEAAITGMNGFQVGRKRLKVQHKKEK 230

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BLAST of mRNA_H-paniculata_contig3779.9920.1 vs. uniprot
Match: M4B497_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B497_HYAAE)

HSP 1 Score: 149 bits (377), Expect = 6.850e-38
Identity = 90/174 (51.72%), Postives = 101/174 (58.05%), Query Frame = 0

Query:  106 GGGANTMGAPIQSYYPPSLYGVPASMYPFPPQAGFHGQYAGGGGXXXXXXXXXXXXGAGSTAAGNFYAGQGGYARSTNPGQPIQTTTNLQGPDGCNLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDK 279
            GG +   G P+Q  YPP  YG  + MYPFP   G+  Q  G                                     PG PIQTT + QGP GCNLFVFHIPN MTN+ LF  F+ FGNVISARIMVEK TGRSRGFGFVSYDN  SA+ AI  MNG+Q+  KRLKVQHKK+K
Sbjct:  101 GGYSQPYGQPMQ--YPPP-YGGSSYMYPFPQAYGYPPQIVG-------------------------------------PGPPIQTTESGQGPPGCNLFVFHIPNDMTNQDLFNYFATFGNVISARIMVEKETGRSRGFGFVSYDNAPSADAAIKGMNGFQVGRKRLKVQHKKEK 234

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BLAST of mRNA_H-paniculata_contig3779.9920.1 vs. uniprot
Match: H3GBP4_PHYRM (Uncharacterized protein n=12 Tax=Phytophthora TaxID=4783 RepID=H3GBP4_PHYRM)

HSP 1 Score: 149 bits (377), Expect = 7.410e-38
Identity = 91/174 (52.30%), Postives = 99/174 (56.90%), Query Frame = 0

Query:  106 GGGANTMGAPIQSYYPPSLYGVPASMYPFPPQAGFHGQYAGGGGXXXXXXXXXXXXGAGSTAAGNFYAGQGGYARSTNPGQPIQTTTNLQGPDGCNLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDK 279
            GG     G P+Q  YPP  YG    MYPFP   G+  Q  G                                     PG PIQTT + QGP GCNLFVFHIPN MTN+ LF  F+ FGNVISARIMVEK TGRSRGFGFVSYDN  SAE AI  MNG+Q+  KRLKVQHKK+K
Sbjct:  104 GGYPQQYGQPMQ--YPPP-YGGSGYMYPFPQAYGYPPQIVG-------------------------------------PGPPIQTTESGQGPPGCNLFVFHIPNDMTNQDLFNYFATFGNVISARIMVEKETGRSRGFGFVSYDNAPSAEAAIKGMNGFQVGRKRLKVQHKKEK 237

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BLAST of mRNA_H-paniculata_contig3779.9920.1 vs. uniprot
Match: K3WGX7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WGX7_GLOUD)

HSP 1 Score: 148 bits (374), Expect = 1.050e-37
Identity = 77/109 (70.64%), Postives = 86/109 (78.90%), Query Frame = 0

Query:  172 YAGQGGYA-RSTNPGQPIQTTTNLQGPDGCNLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDK 279
            YA   GYA +   PG PIQTT + QGP GCNLFVFHIPN MTN+ LF  F+ FGNVISARIMVEK TGRSRGFGFVSYDN  SA+ AI+ MNG+Q+  KRLKVQHKK+K
Sbjct:  116 YAQPYGYAPQVAGPGPPIQTTESGQGPPGCNLFVFHIPNDMTNQDLFNYFATFGNVISARIMVEKETGRSRGFGFVSYDNAPSADAAIAGMNGFQVGRKRLKVQHKKEK 224

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BLAST of mRNA_H-paniculata_contig3779.9920.1 vs. uniprot
Match: A0A8K1CK88_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CK88_PYTOL)

HSP 1 Score: 147 bits (372), Expect = 2.020e-37
Identity = 75/104 (72.12%), Postives = 84/104 (80.77%), Query Frame = 0

Query:  177 GYA-RSTNPGQPIQTTTNLQGPDGCNLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDK 279
            GYA +   PG PIQTT + QGP GCNLFVFHIPN MTN+ LF  F+ +GNVISARIMVEK TGRSRGFGFVSYDN  SAE+AI  MNG+Q+  KRLKVQHKK+K
Sbjct:  113 GYAPQVAGPGPPIQTTESGQGPPGCNLFVFHIPNDMTNQDLFNYFAPYGNVISARIMVEKETGRSRGFGFVSYDNAASAEQAIKAMNGFQVGRKRLKVQHKKEK 216

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BLAST of mRNA_H-paniculata_contig3779.9920.1 vs. uniprot
Match: A0A0P1AAZ2_PLAHL (Cug-bp-and etr-3-like n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AAZ2_PLAHL)

HSP 1 Score: 147 bits (370), Expect = 5.240e-37
Identity = 76/119 (63.87%), Postives = 85/119 (71.43%), Query Frame = 0

Query:  184 PGQPIQTTTNLQGPDGCNLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDKERDRYVAAPSPTQRLMGAAGGVG 302
            PG PIQTT + QGP GCNLFVFHIPN MTN+ LF  F+ FGNVISARIMVEK TGRSRGFGFVSYDN  SA+ AI  MNG+Q+  KRLKVQHKK+K ++        T   M   G  G
Sbjct:  133 PGPPIQTTESGQGPPGCNLFVFHIPNDMTNQDLFNYFATFGNVISARIMVEKETGRSRGFGFVSYDNAPSADAAIKGMNGFQVGRKRLKVQHKKEKNQNPMFGEMIDTVNDMAVQGSGG 251

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig3779.9920.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig3779.9920.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G6S0_ECTSI	1.440e-140	59.44	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A6H5L5J0_9PHAE	1.030e-88	55.74	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A7S2V9D2_9STRA	6.520e-39	74.75	Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa...	[more]
D0NCQ3_PHYIT	7.680e-39	46.86	CUG-BP-and ETR-3-like factor, putative n=5 Tax=Phy...	[more]
A0A6A3ZKX5_9STRA	6.160e-38	50.27	Uncharacterized protein n=4 Tax=Phytophthora TaxID...	[more]
M4B497_HYAAE	6.850e-38	51.72	Uncharacterized protein n=1 Tax=Hyaloperonospora a...	[more]
H3GBP4_PHYRM	7.410e-38	52.30	Uncharacterized protein n=12 Tax=Phytophthora TaxI...	[more]
K3WGX7_GLOUD	1.050e-37	70.64	Uncharacterized protein n=1 Tax=Globisporangium ul...	[more]
A0A8K1CK88_PYTOL	2.020e-37	72.12	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
A0A0P1AAZ2_PLAHL	5.240e-37	63.87	Cug-bp-and etr-3-like n=1 Tax=Plasmopara halstedii...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 201..274 e-value: 5.1E-28 score: 109.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 202..272 e-value: 4.6E-22 score: 77.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 200..278 score: 19.382
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 181..284 e-value: 2.8E-29 score: 103.4
None	No IPR available	PANTHER	PTHR24012	RNA BINDING PROTEIN	coord: 170..282
None	No IPR available	PANTHER	PTHR24012:SF686	CUGBP ELAV-LIKE FAMILY MEMBER 1	coord: 170..282
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 192..299

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig3779	contig	H-paniculata_contig3779:4151..13983 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig3779.9920.1	mRNA_H-paniculata_contig3779.9920.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig3779 2462..14460 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig3779.9920.1 ID=prot_H-paniculata_contig3779.9920.1|Name=mRNA_H-paniculata_contig3779.9920.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=521bp
MSYHQQPEQGGRRQGPPYPILGANGGAAPARAPAAGVYGMPQYQQAEGYG
GPPPSPVVAASWERGYVSGLDEGYMRPDPQGILPATGTPLASGTSGSGET
GFLVSGGGANTMGAPIQSYYPPSLYGVPASMYPFPPQAGFHGQYAGGGGA
GGAGAAGSTGAGAGSTAAGNFYAGQGGYARSTNPGQPIQTTTNLQGPDGC
NLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDN
RDSAEKAISQMNGYQIEHKRLKVQHKKDKERDRYVAAPSPTQRLMGAAGG
VGPAGRVQPAPHFRQPLLPQHAALRHHAHAQGIPGHGDGTDLMPQTPSKV
GDDKPPPPSPATEGNTAFAGANAEGDLSDNQASANDVGGIEGAGDPTYSS
RATGGEKYGRANDHPHLAYIYRGRGTAQPPDEGVDGQEEGENAYLGAAPA
ASVGGTRRAASPDPKPGVPRPRSASPSAAANAAAAVAAAAAMPHQSLEHA
MQTKLSLGGSGSSPASAQPS*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf