prot_H-paniculata_contig37631.9891.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig37631.9891.1
Unique Nameprot_H-paniculata_contig37631.9891.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length127
Homology
BLAST of mRNA_H-paniculata_contig37631.9891.1 vs. uniprot
Match: A0A2I0V7V6_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0V7V6_9ASPA)

HSP 1 Score: 99.4 bits (246), Expect = 3.730e-24
Identity = 51/120 (42.50%), Postives = 75/120 (62.50%), Query Frame = 0
Query:    5 CEKGKTSKQPVKKYREEGT---TEPLELVHTDIAGPVGK-SFEGCRFAIIFVDDYSRMRTVYTLRQKSEALWALKKFERDVTRANGLRIKRPRSDQGGEYTGKPFRQFCAENGIKQEFSA 120
            CE     KQP K +  E +    +PL+L+HTD+ GP+   SF   R+ + F+DDYSR   VY L++KSEA    KKF+    + +G  IK  RSD+GGE+T K F+++C E+GI+ + +A
Sbjct:   20 CEGCVFGKQPRKSFPNEASFRAKKPLQLIHTDVCGPIAPASFGKHRYFLTFIDDYSRKIWVYFLKEKSEAFTMFKKFKASTEKESGFLIKSIRSDRGGEFTSKAFKEYCEEHGIRHQLTA 139          
BLAST of mRNA_H-paniculata_contig37631.9891.1 vs. uniprot
Match: K8Z011_NANGC (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z011_NANGC)

HSP 1 Score: 101 bits (251), Expect = 4.950e-24
Identity = 54/123 (43.90%), Postives = 78/123 (63.41%), Query Frame = 0
Query:    1 VFSACEKGKTSKQPVKKYREEGTTEPLELVHTDIAGPVG-KSFEGCRFAIIFVDDYSRMRTVYTLRQKSEALWALKKFERDVTRAN-GLRIKRP---RSDQGGEYTGKPFRQFCAENGIKQEF 118
            V+  CE+ K +K+       E   EPLEL+HTD+ GP+  +S  G R+AI F DDY+R R VY ++ KSE+L  LK++ +D++  +   ++K     RSD GGEYTG  F+ FC  NGI+Q+F
Sbjct:   36 VYGTCERAKQTKRSFGTKSWERANEPLELLHTDVLGPIEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYLKDISVLHRDSKVKTLIGLRSDNGGEYTGINFKHFCKNNGIRQDF 158          
BLAST of mRNA_H-paniculata_contig37631.9891.1 vs. uniprot
Match: K8YS61_NANGC (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YS61_NANGC)

HSP 1 Score: 100 bits (248), Expect = 1.420e-23
Identity = 56/125 (44.80%), Postives = 77/125 (61.60%), Query Frame = 0
Query:    1 VFSACEKGKTSKQPVKKYREEGTTEPLELVHTDIAGPVG-KSFEGCRFAIIFVDDYSRMRTVYTLRQKSEALWALKKFERDVT------RANGLRIKRPRSDQGGEYTGKPFRQFCAENGIKQEF 118
            V + CE+ K +K+       E   EPLELVHTD+ GPV  +S  G R+AI F DDY+R R VY ++ KS++L  LK++ +D+       + N LR  R  SD GGEYTG  F+ FC  +GI+Q+F
Sbjct:   36 VCATCERAKHTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSDSLDCLKRYIQDMNISFRDHKVNTLRGLR--SDNGGEYTGVDFKNFCKNHGIRQDF 158          
BLAST of mRNA_H-paniculata_contig37631.9891.1 vs. uniprot
Match: W7TWC6_9STRA (Retrotransposon unclassified n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TWC6_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.860e-23
Identity = 53/113 (46.90%), Postives = 71/113 (62.83%), Query Frame = 0
Query:   22 GTTEPLELVHTDIAGPVG-KSFEGCRFAIIFVDDYSRMRTVYTLRQKSEALWALKKFERDVT------RANGLRIKRPRSDQGGEYTGKPFRQFCAENGIKQEFSAVWRSAAG 127
            G  EPLELVHTD+ GPV  +S  G R+AI F DDY+R R VY ++ KSE+L  LK++ +D+       + N LR  R  SD GGEYTG  F+ FC  +GI+Q+F  + +   G
Sbjct:   42 GAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMNISFRDHKVNTLRGLR--SDNGGEYTGIDFKNFCKNHGIRQDFGRIGKEFLG 152          
BLAST of mRNA_H-paniculata_contig37631.9891.1 vs. uniprot
Match: W7TGQ6_9STRA (Retrotransposon unclassified n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGQ6_9STRA)

HSP 1 Score: 100 bits (250), Expect = 5.080e-23
Identity = 57/125 (45.60%), Postives = 76/125 (60.80%), Query Frame = 0
Query:    1 VFSACEKGKTSKQPVKKYREEGTTEPLELVHTDIAGPVG-KSFEGCRFAIIFVDDYSRMRTVYTLRQKSEALWALKKFERDVT------RANGLRIKRPRSDQGGEYTGKPFRQFCAENGIKQEF 118
            V   CE+ K +K+       E   EPLELVHTD+ GPV  +S  G R+AI F DDY+R R VY ++ KSE+L  LK++ +D+       + N LR  R  SD GGEYTG  F+ FC  +GI+Q+F
Sbjct:   56 VCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMNISFRDHKVNTLRGLR--SDNGGEYTGIDFKNFCKNHGIRQDF 178          
BLAST of mRNA_H-paniculata_contig37631.9891.1 vs. uniprot
Match: A0A6G0JTE1_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0JTE1_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 5.390e-23
Identity = 52/123 (42.28%), Postives = 78/123 (63.41%), Query Frame = 0
Query:    1 VFSACEKGKT-----SKQPVKKYREEGTTEPLELVHTDIAGPVG-KSFEGCRFAIIFVDDYSRMRTVYTLRQKSEALWALKKFERDVTRANGLRIKRPRSDQGGEYTGKPFRQFCAENGIKQE 117
            V + C  GK      S+ P K  +  G    L+L+H+D+ GP+  K+  GC +A+ F+DD+SR  TVY +++K+E L   KKFE D+  A G +IKR RSD GGEYTG+ F+++ ++ GI+ E
Sbjct:   16 VCAGCCMGKMRGDNFSRSPEKTVKSAGV---LDLIHSDVMGPMQTKTPGGCTYAVTFIDDFSRHVTVYFMKKKAEVLEKFKKFEADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHE 135          
BLAST of mRNA_H-paniculata_contig37631.9891.1 vs. uniprot
Match: W7T9C2_9STRA (Copia-like retrotransposable element (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9C2_9STRA)

HSP 1 Score: 102 bits (253), Expect = 6.380e-23
Identity = 55/119 (46.22%), Postives = 76/119 (63.87%), Query Frame = 0
Query:    5 CEKGKTSKQPVKKYREEGTTEPLELVHTDIAGPVG-KSFEGCRFAIIFVDDYSRMRTVYTLRQKSEALWALKKFERDVTRANGLRIKRP----RSDQGGEYTGKPFRQFCAENGIKQEF 118
            CE+ K +K+       E   EPLELVHTD+ GP+  +S  G R+AI F DDY+R R VYT+R+KSE+L  LK++ +D +  +  R  +     RSD GGEYTG  F+ FC  +GI+Q+F
Sbjct:    8 CERAKQTKKSFGTKSRERAKEPLELVHTDVLGPIEVESLGGARYAIGFTDDYTRWRVVYTMRRKSESLDCLKRYIKDKSVLHRDRKMKTLIGLRSDNGGEYTGVDFKNFCKNHGIRQDF 126          
BLAST of mRNA_H-paniculata_contig37631.9891.1 vs. uniprot
Match: A0A6D2JNB5_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JNB5_9BRAS)

HSP 1 Score: 96.3 bits (238), Expect = 1.630e-22
Identity = 50/123 (40.65%), Postives = 74/123 (60.16%), Query Frame = 0
Query:    1 VFSACEKGKTSKQPVKKYREEGTTEPLELVHTDIAGPVGKSFE-GCRFAIIFVDDYSRMRTVYTLRQKSEALWALKKFERDVTRANGLRIKRPRSDQGGEYTGKPFRQFCAENGIKQEFSAVW 122
            +   C KGK +++ + K  E  +T  L+LVH+DI GP+    E G R+ + F+DD+SR    Y L +KSEAL   K+F+  V R  G ++   R+D+GGEY  K F  FC E GIK++ +A +
Sbjct:   16 ICEVCMKGKQNRESIPKKSEWKSTRGLQLVHSDICGPISPISESGKRYILNFIDDFSRKCWTYLLSEKSEALAVFKEFKAAVERELGEKLVCLRTDRGGEYNSKAFEAFCKETGIKRQLTAAY 138          
BLAST of mRNA_H-paniculata_contig37631.9891.1 vs. uniprot
Match: A0A6A3AD07_HIBSY (Uncharacterized protein n=7 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3AD07_HIBSY)

HSP 1 Score: 101 bits (252), Expect = 1.640e-22
Identity = 54/119 (45.38%), Postives = 73/119 (61.34%), Query Frame = 0
Query:    5 CEKGKTSKQPVKKYREEGTTEPLELVHTDIAGPVG-KSFEGCRFAIIFVDDYSRMRTVYTLRQKSEALWALKKFERDVTRANGLRIKRPRSDQGGEYTGKPFRQFCAENGIKQEFSAVW 122
            C  GK S+   +K  E     PLEL+HTDI GP+  +SF   R+ I F+DD+SR   VY L++KSEA    KKF+  V +A G  IK  RSD+GGEYT   F ++C E GI++  +A +
Sbjct:  525 CVLGKQSRTSFQKKAEYRAKHPLELIHTDICGPITPESFSSKRYFISFIDDFSRKTWVYFLKEKSEAFEVFKKFKVMVEKATGRHIKAVRSDRGGEYTSTAFMEYCEEQGIRRFLTAPY 643          
BLAST of mRNA_H-paniculata_contig37631.9891.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA)

HSP 1 Score: 101 bits (251), Expect = 2.190e-22
Identity = 57/125 (45.60%), Postives = 76/125 (60.80%), Query Frame = 0
Query:    1 VFSACEKGKTSKQPVKKYREEGTTEPLELVHTDIAGPVG-KSFEGCRFAIIFVDDYSRMRTVYTLRQKSEALWALKKFERDVT------RANGLRIKRPRSDQGGEYTGKPFRQFCAENGIKQEF 118
            V   CE+ K +K+       E   EPLELVHTD+ GPV  +S  G R+AI F DDY+R R VY ++ KSE+L  LK++ +D+       + N LR  R  SD GGEYTG  F+ FC  +GI+Q+F
Sbjct:  102 VCGTCERAKQTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMNISFRDHKVNTLRGLR--SDNGGEYTGVDFKNFCKNHGIRQDF 224          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig37631.9891.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2I0V7V6_9ASPA3.730e-2442.50Retrovirus-related Pol polyprotein from transposon... [more]
K8Z011_NANGC4.950e-2443.90Retrovirus-related pol polyprotein from transposon... [more]
K8YS61_NANGC1.420e-2344.80Retrovirus-related pol polyprotein from transposon... [more]
W7TWC6_9STRA1.860e-2346.90Retrotransposon unclassified n=1 Tax=Nannochlorops... [more]
W7TGQ6_9STRA5.080e-2345.60Retrotransposon unclassified n=1 Tax=Nannochlorops... [more]
A0A6G0JTE1_9STRA5.390e-2342.28Integrase catalytic domain-containing protein n=3 ... [more]
W7T9C2_9STRA6.380e-2346.22Copia-like retrotransposable element (Fragment) n=... [more]
A0A6D2JNB5_9BRAS1.630e-2240.65Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A3AD07_HIBSY1.640e-2245.38Uncharacterized protein n=7 Tax=Hibiscus syriacus ... [more]
W7T174_9STRA2.190e-2245.60Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 24..124
e-value: 1.5E-16
score: 60.6
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 22..127
score: 12.821
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 16..126
e-value: 7.5E-18
score: 66.4
NoneNo IPR availablePANTHERPTHR11439:SF250coord: 3..120
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 3..120
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 23..123

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig37631contigH-paniculata_contig37631:423..803 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig37631.9891.1mRNA_H-paniculata_contig37631.9891.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig37631 423..803 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig37631.9891.1 ID=prot_H-paniculata_contig37631.9891.1|Name=mRNA_H-paniculata_contig37631.9891.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp
VFSACEKGKTSKQPVKKYREEGTTEPLELVHTDIAGPVGKSFEGCRFAII
FVDDYSRMRTVYTLRQKSEALWALKKFERDVTRANGLRIKRPRSDQGGEY
TGKPFRQFCAENGIKQEFSAVWRSAAG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR036397RNaseH_sf
IPR039537Retrotran_Ty1/copia-like
IPR012337RNaseH-like_sf