mRNA_H-paniculata_contig11502.971.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11502.971.1
Unique NamemRNA_H-paniculata_contig11502.971.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11502.971.1 vs. uniprot
Match: D7FTZ3_ECTSI (EDR2_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTZ3_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 1.640e-38
Identity = 64/91 (70.33%), Postives = 79/91 (86.81%), Query Frame = 1 
Query:    1 EQVGLPSIARRFSGKPVLVYGRECGMMRGERDGGFAELDLNAHNFSYIGRKGLYITLDKWKSAIFQIGFLIEARTDEEQPEHMLGCAVFKG 273
            ++VGLPSIARRFSGKP+L+YG+E  M++G    G+ ELDLNAH FSY+GRKGLY+TL+KWK A+F+IGFL+E RTDEEQPEH+LGC VF G
Sbjct: 1112 DEVGLPSIARRFSGKPILLYGKESSMVKGP---GYVELDLNAHAFSYVGRKGLYVTLEKWKRAVFRIGFLLEGRTDEEQPEHILGCGVFHG 1199
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BLAST of mRNA_H-paniculata_contig11502.971.1 vs. uniprot
Match: A0A835Z8Q7_9STRA (EDR2_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Q7_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 6.200e-9
Identity = 28/50 (56.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 EQVGLPSIARRFSGKPVLVYGRECGMMRGERDGGFAELDLNAHNFSYIGR 150
            + VGLPS  R+F+ +P+L++GRE    R    G  AELD+NAHNFSYIGR
Sbjct:  403 DTVGLPSFCRKFNARPILIHGRESSFTRDVAKGR-AELDVNAHNFSYIGR 451
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BLAST of mRNA_H-paniculata_contig11502.971.1 vs. uniprot
Match: A0A3R7D3G4_9STRA (EDR2_C domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7D3G4_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.160e-8
Identity = 27/75 (36.00%), Postives = 45/75 (60.00%), Query Frame = 1 
Query:   34 FSGKPVLVYGRECGMMRGERDGGFAELDLNAHNFSYIGRKGLYITLDKWKSAIFQIGFLIEARTDEEQPEHMLGC 258
            ++G+P+L   +     R  R  G+ E+D++AH F+++ RKGL    D +   I   GF++E + D+E PE +LGC
Sbjct:   40 YNGQPILTRPQH----RFYRGDGYFEVDIDAHLFNFVARKGLSGVADHFGHMIVDFGFVLEGQEDDEVPEQILGC 110
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BLAST of mRNA_H-paniculata_contig11502.971.1 vs. uniprot
Match: A0A396ZMV0_9STRA (PH domain-containing protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A396ZMV0_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.720e-8
Identity = 26/75 (34.67%), Postives = 46/75 (61.33%), Query Frame = 1 
Query:   34 FSGKPVLVYGRECGMMRGERDGGFAELDLNAHNFSYIGRKGLYITLDKWKSAIFQIGFLIEARTDEEQPEHMLGC 258
            ++G+P+L   +     R  R  G+ E+D++AH F+++ RKGL    D + + +   GF++E + D+E PE +LGC
Sbjct:  160 YNGQPILTRPQH----RFYRGDGYFEVDIDAHTFNFVARKGLSGVADHFGNMVVDFGFVLEGQDDDEVPEQILGC 230
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BLAST of mRNA_H-paniculata_contig11502.971.1 vs. uniprot
Match: A0A067C4M5_SAPPC (PH domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C4M5_SAPPC)

HSP 1 Score: 59.7 bits (143), Expect = 2.130e-8
Identity = 27/75 (36.00%), Postives = 46/75 (61.33%), Query Frame = 1 
Query:   34 FSGKPVLVYGRECGMMRGERDGGFAELDLNAHNFSYIGRKGLYITLDKWKSAIFQIGFLIEARTDEEQPEHMLGC 258
            ++G+P+L   +     R  R  G+ E+D++AH F+Y+ RKGL    D + + +   GF++E + D+E PE +LGC
Sbjct:  439 YNGQPILTRPQH----RFYRGDGYFEVDIDAHLFNYVARKGLCGVTDHFGNMVVDFGFVLEGQEDDELPEQILGC 509
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BLAST of mRNA_H-paniculata_contig11502.971.1 vs. uniprot
Match: W4H4Q6_9STRA (PH domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H4Q6_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 2.950e-8
Identity = 26/75 (34.67%), Postives = 46/75 (61.33%), Query Frame = 1 
Query:   34 FSGKPVLVYGRECGMMRGERDGGFAELDLNAHNFSYIGRKGLYITLDKWKSAIFQIGFLIEARTDEEQPEHMLGC 258
            ++G+P+L   +     R  R  G+ E+D++AH F+++ RKGL    D + + +   GF++E + D+E PE +LGC
Sbjct:  539 YNGQPILTRPQH----RFYRGDGYFEVDIDAHTFNFVARKGLSGVADHFGNMVVDFGFVLEGQDDDEVPEQILGC 609
[Close]
BLAST of mRNA_H-paniculata_contig11502.971.1 vs. uniprot
Match: D0MVJ7_PHYIT (EDR2_C domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=D0MVJ7_PHYIT)

HSP 1 Score: 56.6 bits (135), Expect = 3.000e-8
Identity = 28/75 (37.33%), Postives = 44/75 (58.67%), Query Frame = 1 
Query:   34 FSGKPVLVYGRECGMMRGERDGGFAELDLNAHNFSYIGRKGLYITLDKWKSAIFQIGFLIEARTDEEQPEHMLGC 258
            ++G+P+L   +     R  R  G+ E+D++AH+F+YI RKGL        + I   GF++E + D E PE +LGC
Sbjct:   36 YNGQPILTRPQH----RFYRGDGYFEVDVDAHDFNYIARKGLVGVSTHACNMILDFGFVLEGQEDNELPEQILGC 106
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BLAST of mRNA_H-paniculata_contig11502.971.1 vs. uniprot
Match: A0A7S2M600_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M600_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 4.020e-8
Identity = 31/89 (34.83%), Postives = 49/89 (55.06%), Query Frame = 1 
Query:    1 EQVGLPSIARRFSGKPVLVYGRECGMMRGERDGGFAELDLNAHNFSYIGRKGLYITLDKWKSAIFQIGFLIEARTDEEQPEHMLG-CAV 264
            E   +P     ++GKP LV   + G     R   + E  +N + ++++ RKGL+  +  ++  IF +GF IEAR DEE PE +LG C +
Sbjct:  500 ESTSIPKFIHGYNGKPALVT--KSGTFT--RHENYIEFTINVNYWAFLARKGLHSLMPYFQDFIFNVGFTIEARHDEEMPEVLLGGCRI 584
[Close]
BLAST of mRNA_H-paniculata_contig11502.971.1 vs. uniprot
Match: W2PVA4_PHYPN (PH domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2PVA4_PHYPN)

HSP 1 Score: 58.5 bits (140), Expect = 5.490e-8
Identity = 29/75 (38.67%), Postives = 44/75 (58.67%), Query Frame = 1 
Query:   34 FSGKPVLVYGRECGMMRGERDGGFAELDLNAHNFSYIGRKGLYITLDKWKSAIFQIGFLIEARTDEEQPEHMLGC 258
            ++G+P+L   +     R  R  G+ E+D+NAH+F+YI RKGL        + I   GF++E + D E PE +LGC
Sbjct:  516 YNGQPILTRPQH----RFYRGDGYFEVDVNAHDFNYIARKGLVGVSTHACNMILDFGFVLEGQEDNELPEQILGC 586
[Close]
BLAST of mRNA_H-paniculata_contig11502.971.1 vs. uniprot
Match: A0A225WXH4_9STRA (PH domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WXH4_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 7.360e-8
Identity = 28/75 (37.33%), Postives = 43/75 (57.33%), Query Frame = 1 
Query:   34 FSGKPVLVYGRECGMMRGERDGGFAELDLNAHNFSYIGRKGLYITLDKWKSAIFQIGFLIEARTDEEQPEHMLGC 258
            ++G+P+L   +     R  R  G+ E+D+NAH+F+YI RKGL          +   GF++E + D E PE +LGC
Sbjct:  387 YNGQPILTRPQH----RFYRGDGYFEVDVNAHDFNYIARKGLVGVSTHAYKMVLDFGFVLEGQEDHELPEQILGC 457
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11502.971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTZ3_ECTSI1.640e-3870.33EDR2_C domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A835Z8Q7_9STRA6.200e-956.00EDR2_C domain-containing protein n=1 Tax=Tribonema... [more]
A0A3R7D3G4_9STRA1.160e-836.00EDR2_C domain-containing protein n=1 Tax=Aphanomyc... [more]
A0A396ZMV0_9STRA1.720e-834.67PH domain-containing protein n=6 Tax=Aphanomyces a... [more]
A0A067C4M5_SAPPC2.130e-836.00PH domain-containing protein n=2 Tax=Saprolegnia T... [more]
W4H4Q6_9STRA2.950e-834.67PH domain-containing protein n=4 Tax=Aphanomyces a... [more]
D0MVJ7_PHYIT3.000e-837.33EDR2_C domain-containing protein n=2 Tax=Phytophth... [more]
A0A7S2M600_9STRA4.020e-834.83Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
W2PVA4_PHYPN5.490e-838.67PH domain-containing protein n=10 Tax=Phytophthora... [more]
A0A225WXH4_9STRA7.360e-837.33PH domain-containing protein n=1 Tax=Phytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11502contigH-paniculata_contig11502:5691..7028 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score143.7
Seed ortholog evalue4.3e-32
Seed eggNOG ortholog2880.D7FTZ3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF1336)
EggNOG OGs28UHR@1,2R18H@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928856.5070176-CDS-H-paniculata_contig11502:5690..58101622928856.5070176-CDS-H-paniculata_contig11502:5690..5810Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11502 5691..5810 -
1691480647.195619-CDS-H-paniculata_contig11502:5690..58101691480647.195619-CDS-H-paniculata_contig11502:5690..5810Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11502 5691..5810 -
1622928856.5202398-CDS-H-paniculata_contig11502:6875..70281622928856.5202398-CDS-H-paniculata_contig11502:6875..7028Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11502 6876..7028 -
1691480647.2052977-CDS-H-paniculata_contig11502:6875..70281691480647.2052977-CDS-H-paniculata_contig11502:6875..7028Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11502 6876..7028 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11502.971.1prot_H-paniculata_contig11502.971.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11502 5691..7028 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11502.971.1

>prot_H-paniculata_contig11502.971.1 ID=prot_H-paniculata_contig11502.971.1|Name=mRNA_H-paniculata_contig11502.971.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp
EQVGLPSIARRFSGKPVLVYGRECGMMRGERDGGFAELDLNAHNFSYIGR
KGLYITLDKWKSAIFQIGFLIEARTDEEQPEHMLGCAVFKG
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mRNA from alignment at H-paniculata_contig11502:5691..7028-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11502.971.1 ID=mRNA_H-paniculata_contig11502.971.1|Name=mRNA_H-paniculata_contig11502.971.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1338bp|location=Sequence derived from alignment at H-paniculata_contig11502:5691..7028- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCAGGTTGGGCTGCCCAGTATCGCGCGGCGATTCAGCGGGAAGCCGGT
GCTCGTGTATGGGAGGGAGTGCGGCATGATGAGGGGTGAACGAGATGGTG
GATTCGCAGAGTTGGACCTTAATGCACACAATTTTTCCTACATCGGCCGC
AAGGTGATGGTCATTTCACACACCAAGATATTCCACGCACTCAACGAGTA
ATTAGTCCACAGCTCGGACGAAGGTCGTTCATTCGTCGATGAAGGATGTC
GCGGATTTTGGAACTATACCAGCACGAGGATACTCTGGTGCCTTCCGAAG
GCTACAAATCGATAGCATGGATATCCTGCACACCTCGGAGGAGTGTTTGA
CTTTGAGTAATATTTATAGCCCACCTCCACAGATACTTCTACTTTTGAGC
AGGAAGGGTTGACGGTTCCGTTCCGTGTTGATTACTAGAAAATCAAACCT
TCGTCTGCGCTATGAATTAATCCTCTGAAACGATTGATATTAGTTGGACA
GTGGTACGTACGCGGTGACACCAAAATCTCGACAACCCCCCGACAGGGGT
TGGCTCGTCAAGCTCAACAAGGGATGGACTGAGACATATAACATCATGTA
AACATGGGCCACGGTCTAAAAAACGTAAAACATAATTGGCACCGAAGACA
AGACAGGAAGGGAGGGAGCTTCGTCGCTGTTCTGTTAGGGTCAAGGGGTT
ATCGTCGTCCAATACGTGGCTTCAGATAGCTAAATTTGTCTGTTTGATGT
GTGAAATATTTTCAGACTGTCTTGTAAACTTGCTTGTGTTTGGTTGGTTG
GTTGATTCGCGCAGTGTTGCACGACGGCATCTTGACGTAAACGAATAGAG
CTACTGTATGTTCGATTGCAAAGGTGTTGTAGTTATTCGTTTATTTGGTC
ATGATCCATTGCTGTTGTTGTAGTTGGCTGTTATTCTCTTGTTTTTCCCA
TTCTTGTTCTATTCTGTTATGTTGTGTTATGTTATGTTGTGTTATGTTGT
GTTCTTGTTCTATTTCTTGTTCTCGTTGTCATTTTCTTGTTCTGATCTTG
TTCTGTTCTGTTCTGTTCTGTTCTGTTCTTGTTCCTAGTCTTGATTTCAT
TCTTGATTTTTTTTTTTTTTTGTGGTTCTGGTATTTCGCTTCTCGTTCTT
GTTGATCTTGCTGGCGTTTTCTGATGTAATTGCCAACTGTACCGTATATA
ATAACTTGGTTGCGTCAGGGACTGTACATTACGCTGGACAAGTGGAAGTC
GGCGATATTCCAAATCGGGTTTCTTATCGAGGCACGCACCGATGAGGAAC
AGCCGGAGCACATGCTGGGCTGTGCAGTCTTCAAGGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig11502:5691..7028-

>mRNA_H-paniculata_contig11502.971.1 ID=mRNA_H-paniculata_contig11502.971.1|Name=mRNA_H-paniculata_contig11502.971.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at H-paniculata_contig11502:5691..7028- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCAGGTTGGGCTGCCCAGTATCGCGCGGCGATTCAGCGGGAAGCCGGT
GCTCGTGTATGGGAGGGAGTGCGGCATGATGAGGGGTGAACGAGATGGTG
GATTCGCAGAGTTGGACCTTAATGCACACAATTTTTCCTACATCGGCCGC
AAGGAGCAGGTTGGGCTGCCCAGTATCGCGCGGCGATTCAGCGGGAAGCC
GGTGCTCGTGTATGGGAGGGAGTGCGGCATGATGAGGGGTGAACGAGATG
GTGGATTCGCAGAGTTGGACCTTAATGCACACAATTTTTCCTACATCGGC
CGCAAGGGACTGTACATTACGCTGGACAAGTGGAAGTCGGCGATATTCCA
AATCGGGTTTCTTATCGAGGCACGCACCGATGAGGAACAGCCGGAGCACA
TGCTGGGCTGTGCAGTCTTCAAGGGTGGACTGTACATTACGCTGGACAAG
TGGAAGTCGGCGATATTCCAAATCGGGTTTCTTATCGAGGCACGCACCGA
TGAGGAACAGCCGGAGCACATGCTGGGCTGTGCAGTCTTCAAGGGT
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