prot_H-paniculata_contig36614.9686.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig36614.9686.1
Unique Nameprot_H-paniculata_contig36614.9686.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length241
Homology
BLAST of mRNA_H-paniculata_contig36614.9686.1 vs. uniprot
Match: A0A7D9J652_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9J652_PARCT)

HSP 1 Score: 97.4 bits (241), Expect = 1.920e-20
Identity = 61/154 (39.61%), Postives = 80/154 (51.95%), Query Frame = 0
Query:   95 NIEKRQKVVDTKLLHERLGHVR--------DLPTVARQQGIRLSGKLGVCSACEKGKVSKQPVKKYQEERTTEPLELVHIDIAGPVD-KSLGGYRFAIIFVDDYIRMRKVYNLRQKSEALWTLKKFERDVARANGLRIKRLRLDQGGEYTGKSF 239
            NI K+Q   D  L H RLGH+         +   V+   G+  + +   C AC KGK  + P  K  + R +EP ELVH D+ GP+   SLGG R+ + F+DDY R   VY ++ KSE L   K+F        G  IK LR D GGEY+ K F
Sbjct:   44 NIAKQQPDTDRYLWHCRLGHLGMNNVNKLINENMVSGMDGVSNTNENQFCEACIKGKHHRCPYPKTADYRASEPFELVHSDVCGPMSVPSLGGSRYYVSFIDDYSRYTFVYFMKNKSEVLEKFKEFHTYATNITGKPIKVLRSDNGGEYSSKEF 197          
BLAST of mRNA_H-paniculata_contig36614.9686.1 vs. uniprot
Match: Q5MG99_IPOBA (Hypothetical retrotransposon n=1 Tax=Ipomoea batatas TaxID=4120 RepID=Q5MG99_IPOBA)

HSP 1 Score: 98.6 bits (244), Expect = 7.560e-20
Identity = 69/242 (28.51%), Postives = 115/242 (47.52%), Query Frame = 0
Query:    2 RIIFCNVFHVPEASDSILSVERMVRQGMEAYFGSEQRRLYYNGITIPFEHTSREGYSLRMIVGDEVEIQAPKRAIGKQVKVLRLFSNDYTTSKNIEKRQKVVDTKLLHERLGH--VRDLPTVARQQGIRLSG----KLGVCSACEKGKVSKQPVKKYQEERTTEPLELVHIDIAGPVD-KSLGGYRFAIIFVDDYIRMRKVYNLRQKSEALWTLKKFERDVARANGLRIKRLRLDQGGEYTG 236
            +++  NV H P+   +++S  ++   G   +FG    ++    + +   + S   YSL+  V D+                            ++   +K   ++L H+RLGH  V+ +  +A++   +LSG    KL  C  C  GK  +     +   R +EPL+L+H D+ GP+  +SLGG  + + F+DDY R   VY L+ KS+ L   K+F   V R  G ++K +R D GGEY G
Sbjct:  342 KLVLKNVKHAPDIRLNLISTGKLDDDGFCCFFGDGHWKITKGSLVVARGNKSSNLYSLQSSVSDD----------------------------SVNVVEKECASELWHKRLGHMSVKGIDYLAKKS--KLSGVKEAKLDKCVHCLAGKQRRVSFMSHPPTRKSEPLDLIHSDVCGPMKVRSLGGASYFVTFIDDYSRKLWVYTLKHKSDVLGVFKEFHALVERQTGKKLKCIRTDNGGEYCG 553          
BLAST of mRNA_H-paniculata_contig36614.9686.1 vs. uniprot
Match: A0A7D9DPP1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9DPP1_PARCT)

HSP 1 Score: 98.2 bits (243), Expect = 1.010e-19
Identity = 73/235 (31.06%), Postives = 104/235 (44.26%), Query Frame = 0
Query:    8 VFHVPEASDSILSVERMVRQGMEAYFGSEQRRLYYNGITIPFEHTSREGYSLRMIVGDEVEIQAPKRAIGKQVKVLRLFSNDYTTSKNIEKRQKVVDTKLLHERLGHVRDLPTVARQQGIRLS-GKLGV-CSACEKGKVSKQPVKKYQEERTTEPLELVHIDIAGPVDK-SLGGYRFAIIFVDDYIRMRKVYNLRQKSEALWTLKKFERDVARANGLRIKRLRLDQGGEYTGKSF 239
            V  VPE   ++LSV  M +   E  F  E+  +  NG TI   H       +     D V I   K      V  LR +   Y                  H   G++  L       G++ + G+    C AC + K+ + PV K    RTT+PLEL+H D+ GP++  S+GG ++ + F DDY R   VY L+ KSE     +++   V    GL++K LR D GGEY    F
Sbjct:  302 VLFVPEIKKNLLSVPAMTQMEAEVIFDDEKCYIIKNGKTINIGHLLESKLYVVNTQPDYVNITTTK------VPTLREWHCRYG-----------------HLNFGYINKLAQGNLVTGMKYTKGETSQECEACTRAKMHRIPVPKQSSNRTTQPLELIHSDVCGPMNTDSIGGSKYILTFTDDYTRYVTVYFLKNKSEVYEKFQEYVSMVENFTGLKVKTLRTDNGGEYVSNDF 513          
BLAST of mRNA_H-paniculata_contig36614.9686.1 vs. uniprot
Match: A0A6A3GLF6_9STRA (Integrase catalytic domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GLF6_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.850e-19
Identity = 74/245 (30.20%), Postives = 121/245 (49.39%), Query Frame = 0
Query:    7 NVFHVPEASDSILSVERMVRQGMEAYFGSEQRRLYYNGITIPFEHTSREGYSLRMIVGDEVEIQAPKRAIGKQVKVLRLFSNDYTTSKNIEKRQKVVDTKLLHERLGHV-----RDLPTVARQQGI-RLSGKLG--VCSACEKGKVSKQPVKKYQEE--RTTEPLELVHIDIAGPVD-KSLGGYRFAIIFVDDYIRMRKVYNLRQKSEALWTLKKFERDVARANGLRIKRLRLDQGGEYTGKSFR 240
            +V ++PE   S++SV ++  + + A F  ++    Y   T+         Y L+  VGDEV                    +  TTS+            ++H RLGH+       L T+A   G+ R++      VC+ C  GK+ +    +  E+  ++   L+L+H D+ GP+  K+ GG  +A+ F+DD+ R   VY +++K+E L   KKF+ D+  A G +IKRLR D GGEYTG+ F+
Sbjct:   65 DVLYIPEVEGSLISVAKLAEKDVVAQFSKDKCVFRYGDATVMEAKRCGNVYKLKT-VGDEV-------------------CHSATTSRK-------EPWAVVHARLGHIPYKRYEQLLTMA--DGVPRIADAPSDHVCAGCCMGKMREDNFSRNPEKTVKSAGVLDLIHSDVMGPMQTKTPGGCTYAVTFIDDFSRHVTVYFMKKKAEVLEKFKKFKADMENATGRKIKRLRSDNGGEYTGRLFK 280          
BLAST of mRNA_H-paniculata_contig36614.9686.1 vs. uniprot
Match: A0A6A3H6E3_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=11 Tax=Phytophthora TaxID=4783 RepID=A0A6A3H6E3_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 3.110e-19
Identity = 76/245 (31.02%), Postives = 122/245 (49.80%), Query Frame = 0
Query:    7 NVFHVPEASDSILSVERMVRQGMEAYFGSEQRRLYYNGITIPFEHTSREGYSLRMIVGDEVEIQAPKRAIGKQVKVLRLFSNDYTTSKNIEKRQKVVDTKLLHERLGHV-----RDLPTVARQQGI-RLSGKLG--VCSACEKGKVSKQPVKKYQEE--RTTEPLELVHIDIAGPVD-KSLGGYRFAIIFVDDYIRMRKVYNLRQKSEALWTLKKFERDVARANGLRIKRLRLDQGGEYTGKSFR 240
            +V ++PE   S++SV ++  + + A F  ++    Y   T+         Y L+  VGDEV   A                   TTS+            ++H RLGH+       L T+A   G+ R++ +    VC+ C  GK+ +    +  E+  ++   L+L+H D+ GP+  K+ GG  +A+ F+DD+ R   VY +++K+E L   KKFE D+  A G +IKRLR D GGEYTG+ F+
Sbjct:   18 DVLYIPEVEGSLISVAKLAEKDVVAQFSKDKCVFRYGDATVMEAKRCGNVYKLKT-VGDEVCHAA-------------------TTSRK-------EPWAVVHARLGHIPFKRYEQLLTMA--DGVPRIADEPSDHVCAGCCMGKMREDNFSRSPEKTVKSAGVLDLIHSDVMGPMQTKTPGGCTYAVTFIDDFSRHVTVYFMKKKAEVLEKFKKFEADMENATGRKIKRLRSDNGGEYTGRLFK 233          
BLAST of mRNA_H-paniculata_contig36614.9686.1 vs. uniprot
Match: A0A182GJG5_AEDAL (Integrase catalytic domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GJG5_AEDAL)

HSP 1 Score: 94.4 bits (233), Expect = 3.760e-19
Identity = 72/248 (29.03%), Postives = 116/248 (46.77%), Query Frame = 0
Query:    1 MRIIFCNVFHVPEASDSILSVERMVRQGMEAYFGSEQRRLYYNGITIPFEHTSREGYSLRMIVGDEVEIQAPKRAIGKQVKVLRLFSNDYTTSKNIEKRQKVVDTKLLHERLGHV--RDLPTVARQQ-----GIRLSGKLGVCSACEKGKVSKQPVKKYQEERTTEPLELVHIDIAGPVDKSL-GGYRFAIIFVDDYIRMRKVYNLRQKSEALWTLKKFERDVARANGLRIKRLRLDQGGEYTGKSFR 240
            + +I  +V +VPE  D++LSV+++V +G +  F  +   +  +G            Y +++      E Q   RA   +V V  L+                      H RL H+  R + ++ R       G  L+ +L  C  C + K +K  +   +  R T+PLELVH D+ GP+  +   GY++ I F+DD+  M  VY +R K EAL  LK+F        G+++KRLR D GGEY  +  +
Sbjct:   61 IEVILHDVIYVPECRDNLLSVQKLVERGNKVVFDRQGAAISRDGKVFARAVVKNGIYWIKI----HAEQQPSVRAAVAEVNVNSLW----------------------HRRLAHLNMRSICSLVRGNMVTGVGDLLTEELDFCENCARAKQTKAHIGGTRT-RATKPLELVHSDVCGPITPTTYNGYKYFITFLDDFTHMVVVYLMRSKDEALAKLKEFHAMATAHFGIKMKRLRCDNGGEYRSRDMK 281          
BLAST of mRNA_H-paniculata_contig36614.9686.1 vs. uniprot
Match: A0A6G0JJT4_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0JJT4_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 5.860e-19
Identity = 76/245 (31.02%), Postives = 122/245 (49.80%), Query Frame = 0
Query:    7 NVFHVPEASDSILSVERMVRQGMEAYFGSEQRRLYYNGITIPFEHTSREGYSLRMIVGDEVEIQAPKRAIGKQVKVLRLFSNDYTTSKNIEKRQKVVDTKLLHERLGHV-----RDLPTVARQQGI-RLSGKLG--VCSACEKGKVSKQPVKKYQEE--RTTEPLELVHIDIAGPVD-KSLGGYRFAIIFVDDYIRMRKVYNLRQKSEALWTLKKFERDVARANGLRIKRLRLDQGGEYTGKSFR 240
            +V ++PE   S++SV ++  + + A F  ++  + Y   T+      R  Y L+  VGDEV   A                   TTS+            ++H RLGHV       L T+A   G+ R++      VC+ C  GK+ +    +  E+  ++   L+L+H D+ GP+  K+ GG  +A+ F+DD+ R   VY +++K+E L   K F+ D+  A G +IKRLR D GGEYTG+ F+
Sbjct:  183 DVLYIPEVEGSLISVAKLAEKDVVAQFSKDKCVVRYGDATVMEAKRCRNVYKLKT-VGDEVCHAA-------------------TTSRK-------EPWAVVHARLGHVPYKRYEQLLTMA--DGVPRIADAPSDHVCAGCCMGKMREDNFSRNPEKTVKSAGVLDLIHSDVMGPMQTKTPGGCTYAVTFIDDFSRHVTVYFMKKKAEVLEKFKMFKADMENATGRKIKRLRSDNGGEYTGRLFK 398          
BLAST of mRNA_H-paniculata_contig36614.9686.1 vs. uniprot
Match: A0A6G0JJB2_9STRA (Integrase catalytic domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0JJB2_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 8.350e-19
Identity = 75/245 (30.61%), Postives = 121/245 (49.39%), Query Frame = 0
Query:    7 NVFHVPEASDSILSVERMVRQGMEAYFGSEQRRLYYNGITIPFEHTSREGYSLRMIVGDEVEIQAPKRAIGKQVKVLRLFSNDYTTSKNIEKRQKVVDTKLLHERLGHV-----RDLPTVARQQGI-RLSGKLG--VCSACEKGKVSKQPVKKYQEE--RTTEPLELVHIDIAGPVD-KSLGGYRFAIIFVDDYIRMRKVYNLRQKSEALWTLKKFERDVARANGLRIKRLRLDQGGEYTGKSFR 240
            +V ++PE   S++SV ++  + + A F  ++    Y   T+      R  Y L+  VGDEV   A                   TTS+            ++H RLGH+       L T+A   G+ R++      VC+ C  GK+ +    +  E+  ++   L+L+H D+ GP+  K+ GG  +A+ F+DD+ R   VY +++K+E L   K F+ D+  A G +IKRLR D GGEYTG+ F+
Sbjct:   50 DVLYLPEVEGSLISVAKLAEKDVVAQFSKDKCVFRYGDATVMEAKRCRNVYKLKT-VGDEVCHAA-------------------TTSRK-------EPWAVVHARLGHIPFKRYEQLLTMA--DGVPRIADAPSDHVCAGCCMGKMREDNFSRSPEKTVKSAGVLDLIHSDVMGPMQTKTPGGCTYAVTFIDDFSRHVTVYFMKKKAEVLEKFKMFKADMENATGRKIKRLRSDNGGEYTGRLFK 265          
BLAST of mRNA_H-paniculata_contig36614.9686.1 vs. uniprot
Match: A0A6A4BGX1_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4BGX1_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 9.000e-19
Identity = 75/245 (30.61%), Postives = 122/245 (49.80%), Query Frame = 0
Query:    7 NVFHVPEASDSILSVERMVRQGMEAYFGSEQRRLYYNGITIPFEHTSREGYSLRMIVGDEVEIQAPKRAIGKQVKVLRLFSNDYTTSKNIEKRQKVVDTKLLHERLGHV-----RDLPTVARQQGI-RLSGKLG--VCSACEKGKVSKQPVKKYQEE--RTTEPLELVHIDIAGPVD-KSLGGYRFAIIFVDDYIRMRKVYNLRQKSEALWTLKKFERDVARANGLRIKRLRLDQGGEYTGKSFR 240
            +V ++PE   S++SV ++  + + A F  ++    Y   T+         Y L+  VGDEV   A                   TTS+            ++H RLGH+       L T+A   G+ R++ +    VC+ C  GK+ +    +  E+  ++   L+L+H D+ GP+  K+ GG  +A+ F+DD+ R   VY +++K+E L   KKF+ D+  A G +IKRLR D GGEYTG+ F+
Sbjct:  134 DVLYIPEVEGSLISVAKLAEKDVVAQFSKDKCVFRYGDATVMEAKRCGNVYKLKT-VGDEVCHAA-------------------TTSRK-------EPWAVVHARLGHIPYKRYEQLLTMA--DGVPRIADEPSDHVCAGCCMGKMREDNFSRSPEKTVKSAGVLDLIHSDVMGPMQTKTPGGCTYAVTFIDDFSRHVTVYFMKKKAEVLEKFKKFKADMENATGRKIKRLRSDNGGEYTGRLFK 349          
BLAST of mRNA_H-paniculata_contig36614.9686.1 vs. uniprot
Match: A0A6A3VSH0_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3VSH0_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 9.150e-19
Identity = 75/245 (30.61%), Postives = 122/245 (49.80%), Query Frame = 0
Query:    7 NVFHVPEASDSILSVERMVRQGMEAYFGSEQRRLYYNGITIPFEHTSREGYSLRMIVGDEVEIQAPKRAIGKQVKVLRLFSNDYTTSKNIEKRQKVVDTKLLHERLGHV-----RDLPTVARQQGI-RLSGKLG--VCSACEKGKVSKQPVKKYQEE--RTTEPLELVHIDIAGPVD-KSLGGYRFAIIFVDDYIRMRKVYNLRQKSEALWTLKKFERDVARANGLRIKRLRLDQGGEYTGKSFR 240
            +V ++PE   S++SV ++  + + A F  ++    Y   T+         Y L+  VGDEV   A                   TTS+            ++H RLGH+       L T+A   G+ R++ +    VC+ C  GK+ +    +  E+  ++   L+L+H D+ GP+  K+ GG  +A+ F+DD+ R   VY +++K+E L   KKF+ D+  A G +IKRLR D GGEYTG+ F+
Sbjct:  228 DVLYIPEVEGSLISVAKLAEKDVVAQFSKDKCVFRYGDATVMEAKRCGNVYKLKT-VGDEVCHAA-------------------TTSRK-------EPWAVVHARLGHIPFKRYEQLLTMA--DGVPRIADEPSDHVCAGCCMGKMREDNFSRSPEKTVKSAGVLDLIHSDVMGPMQTKTPGGCTYAVTFIDDFSRHVTVYFMKKKAEVLEKFKKFKADMENATGRKIKRLRSDNGGEYTGRLFK 443          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig36614.9686.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7D9J652_PARCT1.920e-2039.61Retrovirus-related Pol poly from transposon TNT 1-... [more]
Q5MG99_IPOBA7.560e-2028.51Hypothetical retrotransposon n=1 Tax=Ipomoea batat... [more]
A0A7D9DPP1_PARCT1.010e-1931.06Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6A3GLF6_9STRA1.850e-1930.20Integrase catalytic domain-containing protein n=2 ... [more]
A0A6A3H6E3_9STRA3.110e-1931.02Retrovirus-related Pol polyprotein from transposon... [more]
A0A182GJG5_AEDAL3.760e-1929.03Integrase catalytic domain-containing protein n=1 ... [more]
A0A6G0JJT4_9STRA5.860e-1931.02Uncharacterized protein n=2 Tax=Phytophthora fraga... [more]
A0A6G0JJB2_9STRA8.350e-1930.61Integrase catalytic domain-containing protein n=2 ... [more]
A0A6A4BGX1_9STRA9.000e-1930.61Uncharacterized protein (Fragment) n=2 Tax=Phytoph... [more]
A0A6A3VSH0_9STRA9.150e-1930.61Uncharacterized protein n=2 Tax=Phytophthora fraga... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 150..240
e-value: 5.3E-11
score: 44.1
NoneNo IPR availablePANTHERPTHR11439:SF250coord: 74..239
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 74..239
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 156..240
score: 11.088
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 156..240

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig36614contigH-paniculata_contig36614:982..1704 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig36614.9686.1mRNA_H-paniculata_contig36614.9686.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig36614 982..1704 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig36614.9686.1 ID=prot_H-paniculata_contig36614.9686.1|Name=mRNA_H-paniculata_contig36614.9686.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=241bp
MRIIFCNVFHVPEASDSILSVERMVRQGMEAYFGSEQRRLYYNGITIPFE
HTSREGYSLRMIVGDEVEIQAPKRAIGKQVKVLRLFSNDYTTSKNIEKRQ
KVVDTKLLHERLGHVRDLPTVARQQGIRLSGKLGVCSACEKGKVSKQPVK
KYQEERTTEPLELVHIDIAGPVDKSLGGYRFAIIFVDDYIRMRKVYNLRQ
KSEALWTLKKFERDVARANGLRIKRLRLDQGGEYTGKSFR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR039537Retrotran_Ty1/copia-like
IPR001584Integrase_cat-core
IPR012337RNaseH-like_sf