mRNA_H-paniculata_contig11500.969.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11500.969.1
Unique NamemRNA_H-paniculata_contig11500.969.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11500.969.1 vs. uniprot
Match: D8LJ31_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ31_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 1.900e-31
Identity = 47/75 (62.67%), Postives = 65/75 (86.67%), Query Frame = 1 
Query:    1 LPSVFDGHGMDLRWQGWVSSLYGIMSFFIAPVLARASDSLGRVSMLQVSAIGSLAGALGSLYATEKWSFIAARLV 225
            +P+ F+ HGMDLRWQGWV+S YG++SFF+ P+L R SDS+GRV+ML++S +G++ GALGSLYAT +W+FIA+R V
Sbjct:    1 MPAAFESHGMDLRWQGWVASTYGLISFFVGPMLGRVSDSMGRVAMLKMSCVGNIIGALGSLYATGRWTFIASRKV 75
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BLAST of mRNA_H-paniculata_contig11500.969.1 vs. uniprot
Match: A0A6H5JC31_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC31_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.280e-27
Identity = 47/73 (64.38%), Postives = 64/73 (87.67%), Query Frame = 1 
Query:    1 LPSVFDGHGMDLRWQGWVSSLYGIMSFFIAPVLARASDSLGRVSMLQVSAIGSLAGALGSLYATEKWSFIAAR 219
            +P+ F+ HGMDLRWQGWV+S YGI+SFF+ P+L R SDS+GRV+ML++S +G++ GALGSLYAT +W+FIA+R
Sbjct:   85 MPAAFESHGMDLRWQGWVASTYGIISFFVGPMLGRVSDSMGRVAMLKMSCVGNMIGALGSLYATGRWTFIASR 157
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BLAST of mRNA_H-paniculata_contig11500.969.1 vs. uniprot
Match: A0A835Z3Q7_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3Q7_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 4.730e-15
Identity = 39/78 (50.00%), Postives = 56/78 (71.79%), Query Frame = 1 
Query:    1 LPS---VFDGHGMDLRWQGWVSSLYGIMSFFIAPVLARASDSLGRVSMLQVSAIGSLAGALGSLYATEKWSFIAARLV 225
            LPS   +F  +GMDL  QG+V S   + +F ++P+L RASDS GRV++L++SA GS+ GA G+L A  KW+FI AR++
Sbjct:   54 LPSFRDLFASYGMDLVQQGYVGSASALSAFVMSPILGRASDSYGRVTLLKLSAAGSILGAAGTLLAPNKWAFILARVL 131
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11500.969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LJ31_ECTSI1.900e-3162.67MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JC31_9PHAE1.280e-2764.38MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835Z3Q7_9STRA4.730e-1550.00Major facilitator superfamily domain-containing pr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11500contigH-paniculata_contig11500:3567..4248 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionMajor facilitator superfamily domain
Ec32 orthologEc-02_004530.1
Exons2
Model size225
Cds size198
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11500.969.1prot_H-paniculata_contig11500.969.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11500 3594..4248 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928856.3456402-UTR-H-paniculata_contig11500:3566..35931622928856.3456402-UTR-H-paniculata_contig11500:3566..3593Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11500 3567..3593 +
1691480647.0951238-UTR-H-paniculata_contig11500:3566..35931691480647.0951238-UTR-H-paniculata_contig11500:3566..3593Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11500 3567..3593 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928856.36034-CDS-H-paniculata_contig11500:3593..36591622928856.36034-CDS-H-paniculata_contig11500:3593..3659Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11500 3594..3659 +
1691480647.1043916-CDS-H-paniculata_contig11500:3593..36591691480647.1043916-CDS-H-paniculata_contig11500:3593..3659Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11500 3594..3659 +
1622928856.3764331-CDS-H-paniculata_contig11500:4116..42481622928856.3764331-CDS-H-paniculata_contig11500:4116..4248Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11500 4117..4248 +
1691480647.1145468-CDS-H-paniculata_contig11500:4116..42481691480647.1145468-CDS-H-paniculata_contig11500:4116..4248Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11500 4117..4248 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11500.969.1

>prot_H-paniculata_contig11500.969.1 ID=prot_H-paniculata_contig11500.969.1|Name=mRNA_H-paniculata_contig11500.969.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
MDLRWQGWVSSLYGIMSFFIAPVLARASDSLGRVSMLQVSAIGSLAGALG
SLYATEKWSFIAARLV
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mRNA from alignment at H-paniculata_contig11500:3567..4248+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11500.969.1 ID=mRNA_H-paniculata_contig11500.969.1|Name=mRNA_H-paniculata_contig11500.969.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=682bp|location=Sequence derived from alignment at H-paniculata_contig11500:3567..4248+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGCCGTCGGTGTTTGACGGCCATGGAATGGACCTCCGATGGCAGGGCTG
GGTATCCTCTCTTTACGGTATCATGAGCTTCTTCATTGCTCCGGTGAGGT
CGTTTGTGTGTGACCTCTAATCTACTATGGGATTTCCGTGTGTTTCATTA
TTCAAACACTTGAAACGTTTTTTGGGTGGTTTTGTCAAGCTAAATGCCTA
ACCCGTGTTCTTATTCCCCGGAATGTTATAGACGTGACATTCACTTTTAT
TCTGCTAGGTCAACTTCTCGAGGAAAGCCGTGTACATGTATATATATAAT
ATTCCTGCATTGTAGTGCTTTGATATGCGGAGGACCAAGGGTAACTGTTT
GGGATGCTACAGGTACACAGAAACAGGGAAATGAAGCAGATACACAGAAA
TAAGGGAGTACATGAAAACAACACTCGACGCGATAAGAAGCACCCAAAAA
AACACCCTTGCGTATTTCTCTTTTGCTATTCCAGCTACTCGCAAGTTTCG
CGGAGTCGTAATTTCCTGTACCTTCTCCCTATACGCTCTGGAATTATCAG
GTTTTAGCACGTGCAAGCGACTCATTAGGGCGAGTGTCGATGTTACAAGT
CTCGGCCATAGGGTCGTTGGCAGGGGCGCTGGGGTCTCTGTATGCTACCG
AGAAGTGGTCCTTCATCGCCGCGAGGTTGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig11500:3567..4248+

>mRNA_H-paniculata_contig11500.969.1 ID=mRNA_H-paniculata_contig11500.969.1|Name=mRNA_H-paniculata_contig11500.969.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig11500:3567..4248+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACCTCCGATGGCAGGGCTGGGTATCCTCTCTTTACGGTATCATGAG
CTTCTTCATTGCTCCGATGGACCTCCGATGGCAGGGCTGGGTATCCTCTC
TTTACGGTATCATGAGCTTCTTCATTGCTCCGGTTTTAGCACGTGCAAGC
GACTCATTAGGGCGAGTGTCGATGTTACAAGTCTCGGCCATAGGGTCGTT
GGCAGGGGCGCTGGGGTCTCTGTATGCTACCGAGAAGTGGTCCTTCATCG
CCGCGAGGTTGGTGGTTTTAGCACGTGCAAGCGACTCATTAGGGCGAGTG
TCGATGTTACAAGTCTCGGCCATAGGGTCGTTGGCAGGGGCGCTGGGGTC
TCTGTATGCTACCGAGAAGTGGTCCTTCATCGCCGCGAGGTTGGTG
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