mRNA_H-paniculata_contig11473.957.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11473.957.1
Unique NamemRNA_H-paniculata_contig11473.957.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig11473.957.1 vs. uniprot
Match: A0A6H5JAY4_9PHAE (C3H1-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAY4_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 2.350e-32
Identity = 76/162 (46.91%), Postives = 101/162 (62.35%), Query Frame = 1
Query:    4 RLVSIVGEGVPVDKREEGGHLTAEMRCGNHTSADRHTPLVLDQVHQDLKNGRALIFPLEMATSIPGLRISPLGVVVKPNKVRIIHDLTFTQHKKT-DSVNSQTDFKQAPPCELGHVFQTVLLLILALRKKFGPTSRILLSKMDVKDAFWQIPINANNATTFG 486
            +L+  +  G PVD    GG+L AE+  GNH SA  H   + D+V  D+  GRAL+F +     I G+R+SPLGV+ KP K RIIHDLTFT       SVN  TDF QAP C LGHV   +L  +L LR+  G +  IL+ ++DVK+AF QIP++ + A+ FG
Sbjct:  652 QLLRSLSPGAPVDVGL-GGNLDAEVAYGNHPSALLHRDRITDKVVSDVILGRALVFDVRFIREILGVRVSPLGVIDKP-KFRIIHDLTFTSGVPIRTSVNHDTDFDQAPECLLGHVLSDILKRVLYLRQVHGVSLEILICRIDVKEAFRQIPVDPSRASVFG 811          
BLAST of mRNA_H-paniculata_contig11473.957.1 vs. uniprot
Match: A0A2P4XJC0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XJC0_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 6.890e-14
Identity = 48/156 (30.77%), Postives = 78/156 (50.00%), Query Frame = 1
Query:   76 MRCGNHTSADRHTPLVLDQVHQDLKNGRALIFPLEMATSIPGLRISPLGVVVKP----NKVRIIHDLTFTQHKKTDSVNSQTDFKQAPPCELGHVFQTVLLLILALRKKFGPTSRILLSKMDVKDAFWQIPINANNATTFGYVIDKFLIIDLRLQF 531
            +R  NHT+   + P V   + +  K+GR L+    +A     + ISPLGVV K     + VR+I+D +F      +    ++ F +      GH+   +  L     ++  P  RIL+   DV  AF  +PINAN+A  F +++ +FL+ID+   F
Sbjct:  122 VRPPNHTTLSTYLPQVWRHIRKGQKDGRYLVLHASLADKWGEVFISPLGVVAKSGGDGHDVRLINDYSFPDKAAVNDYTDRSHFPEITYNPPGHIANRIFTL-----RRDHPNVRILMMLGDVAGAFRHVPINANHAHMFAFIVGEFLVIDMSCGF 272          
BLAST of mRNA_H-paniculata_contig11473.957.1 vs. uniprot
Match: A0A6A3I0G4_9STRA (Uncharacterized protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3I0G4_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.030e-13
Identity = 51/160 (31.87%), Postives = 82/160 (51.25%), Query Frame = 1
Query:   73 EMRCGNHTSADRHTPLVLDQVHQDLKNGRALIFPLEMATSIPGLRISPLGVVVK----PNKVRIIHDLTFTQHKKTDSVNSQTDFKQA---PPCELGHVFQTVLLLILALRKKFGPTSRILLSKMDVKDAFWQIPINANNATTFGYVIDKFLIIDLRLQF 531
            + R GNH + + H P V   + +  K GR L+  L +A     + ISP+GVV K    P  +R+I+D +F +    +    ++ F +    PP ++          I ALR+   P +RIL+   DV  AF  +P++A +A  F +VI ++L+IDL   F
Sbjct:   18 DHRPGNHGTINDHLPQVWRHIRKGQKEGRYLVVHLRLADQWKEVFISPIGVVAKVDTNPPDIRLINDYSFPEGGAVNDFTDRSHFPEITYNPPGDIAR-------RIFALRRDH-PYARILMMVGDVAGAFRHVPVHAEHAHMFAFVIGEYLVIDLSCGF 169          
BLAST of mRNA_H-paniculata_contig11473.957.1 vs. uniprot
Match: G4YS29_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YS29_PHYSP)

HSP 1 Score: 69.3 bits (168), Expect = 1.290e-10
Identity = 48/158 (30.38%), Postives = 79/158 (50.00%), Query Frame = 1
Query:   79 RCGNHTSADRHTPLVLDQVHQDLKNGRALIFPLEMATSIPGLRISPLGVVVKPNK-VRIIHDLTFTQHKKTDSVNSQTD------FKQAPPCELGHVFQTVLLLILALRKKFGPTSRILLSKMDVKDAFWQIPINANNATTFGYVIDKFLIIDLRLQF 531
            R  NH+S D H   V   + +   +GR L+    +      + +SP+GVV K    +R+I D +F +     S+N  TD       K  PP ++          I+ LR+++ P  RILL   DV  AF  +P++A++A  F +V+ ++L++DL   F
Sbjct:   94 RPRNHSSIDEHLSQVWAHIRKGQADGRYLVVRASLLDQWHDIFLSPIGVVAKDGTDIRVIDDYSFPEGS---SINDFTDRSHLPAIKYNPPADIAR-------RIVELRREY-PDIRILLMLGDVAGAFRHVPVSADHAHMFAFVLGEYLVVDLACGF 240          
BLAST of mRNA_H-paniculata_contig11473.957.1 vs. uniprot
Match: K0RL26_THAOC (Uncharacterized protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RL26_THAOC)

HSP 1 Score: 60.5 bits (145), Expect = 1.770e-7
Identity = 41/145 (28.28%), Postives = 69/145 (47.59%), Query Frame = 1
Query:   64 LTAEMRCGNHTSADRHTPLVLDQVHQDLKNGRALIFPLEMATSIPGLRISPLGVVVK-PNKVRIIHDLTFTQHKKTDSVNSQT-DFKQAPPCELGHVFQTVLLLILALRKKFGPTSRILLSKMDVKDAFWQIPINANNATTFGYV 492
            ++  +  G H S   +   + D+    ++ G+ +I P   A  +PGLRISP GVV +   + R+I D TF+       VN +T         + GH    +L  I+     +GP + I   K+D+ D F++I ++A +    G V
Sbjct:   81 ISQALARGAHQSCMAYVDFLCDEFVDMIQKGQFVILPASEALKLPGLRISPPGVVPQHERRPRMIVDYTFS------GVNDETLPLAPVDAMQFGHALDRILREIMMADPAYGPVNLI---KVDLSDGFYRIGLSAGDMPKLGLV 216          
BLAST of mRNA_H-paniculata_contig11473.957.1 vs. uniprot
Match: K0S3Z5_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S3Z5_THAOC)

HSP 1 Score: 59.3 bits (142), Expect = 4.570e-7
Identity = 40/145 (27.59%), Postives = 67/145 (46.21%), Query Frame = 1
Query:   58 GHLTAEMRCGNHTSADRHTPLVLDQVHQDLKNGRALIFPLEMATSIPGLRISPLGVVV-KPNKVRIIHDLTFTQHKKTDSVNSQT-DFKQAPPCELGHVFQTVLLLILALRKKFGPTSRILLSKMDVKDAFWQIPINANNATTFG 486
            G + A +  G H S D +   + ++    +  G+ ++ P      +PGLRISP GVV  +  + R I D +F++      VN +T         + GH    +L  IL      GP   + L K+D+ D F++I +N ++    G
Sbjct:  854 GRVDAALERGPHKSCDDYHEFLAEEFTDMINKGQWVVLPASAVKHMPGLRISPPGVVPQRDRRPRWIVDYSFSE------VNKETLPLAAMEAMQFGHALDRILREILLADPALGP---VQLMKVDISDGFYRINLNIDDIPKLG 989          
BLAST of mRNA_H-paniculata_contig11473.957.1 vs. uniprot
Match: A0A6A3HDV2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3HDV2_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.150e-6
Identity = 36/112 (32.14%), Postives = 62/112 (55.36%), Query Frame = 1
Query:  208 ISPLGVVVKPNK-VRIIHDLTFTQHKKTDSVNSQTDFKQA---PPCELGHVFQTVLLLILALRKKFGPTSRILLSKMDVKDAFWQIPINANNATTFGYVIDKFLIIDLRLQF 531
            ISP+GVV K    +R+I+D +       +  +++T+       PP ++          I  LR+ + P +RILL   DV  AFW +PI+A++A  F +V++++L++DL   F
Sbjct:    6 ISPIGVVEKDGTDIRVINDYSCPAGASINDYSNRTNLPVITYNPPGDIAR-------RIFTLRQDY-PDARILLMLGDVAGAFWHVPISADDAHMFAFVLEEYLVVDLACGF 109          
BLAST of mRNA_H-paniculata_contig11473.957.1 vs. uniprot
Match: K0S7V5_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S7V5_THAOC)

HSP 1 Score: 55.8 bits (133), Expect = 6.130e-6
Identity = 37/141 (26.24%), Postives = 67/141 (47.52%), Query Frame = 1
Query:   76 MRCGNHTSADRHTPLVLDQVHQDLKNGRALIFPLEMATSIPGLRISPLGVVVKPNK-VRIIHDLTFTQHKKTDSVNSQT-DFKQAPPCELGHVFQTVLLLILALRKKFGPTSRILLSKMDVKDAFWQIPINANNATTFGYV 492
            ++ G H S   H   + ++    +  G+ ++ P     ++PGLR+SP GVV +  +  R I D +F+       VN++T         + GH    +L  IL    + GP   + + K+D+ D F++I +N ++    G V
Sbjct:  148 LKRGPHQSCKEHIDFLHEEFADMVAKGQWVVLPASEVLNLPGLRVSPPGVVPQEGRRPRTIVDYSFSD------VNAETLPLAAMEAMQFGHALDRLLREILLADPRHGP---VYMMKVDLSDGFYRICLNIDDIPKLGIV 279          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11473.957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JAY4_9PHAE2.350e-3246.91C3H1-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A2P4XJC0_9STRA6.890e-1430.77Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A6A3I0G4_9STRA1.030e-1331.88Uncharacterized protein n=3 Tax=Phytophthora fraga... [more]
G4YS29_PHYSP1.290e-1030.38Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
K0RL26_THAOC1.770e-728.28Uncharacterized protein n=2 Tax=Thalassiosira ocea... [more]
K0S3Z5_THAOC4.570e-727.59Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A6A3HDV2_9STRA1.150e-632.14Uncharacterized protein n=1 Tax=Phytophthora rubi ... [more]
K0S7V5_THAOC6.130e-626.24Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11473contigH-paniculata_contig11473:1426..1956 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue3.4e-09
Seed eggNOG ortholog67593.Physo133219
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein). Source PGD
EggNOG OGs2EEVD@1,2SK6B@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size531
Cds size531
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928854.295585-CDS-H-paniculata_contig11473:1425..19561622928854.295585-CDS-H-paniculata_contig11473:1425..1956Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11473 1426..1956 +
1691480646.099529-CDS-H-paniculata_contig11473:1425..19561691480646.099529-CDS-H-paniculata_contig11473:1425..1956Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11473 1426..1956 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11473.957.1prot_H-paniculata_contig11473.957.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11473 1426..1956 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11473.957.1

>prot_H-paniculata_contig11473.957.1 ID=prot_H-paniculata_contig11473.957.1|Name=mRNA_H-paniculata_contig11473.957.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=177bp
DRLVSIVGEGVPVDKREEGGHLTAEMRCGNHTSADRHTPLVLDQVHQDLK
NGRALIFPLEMATSIPGLRISPLGVVVKPNKVRIIHDLTFTQHKKTDSVN
SQTDFKQAPPCELGHVFQTVLLLILALRKKFGPTSRILLSKMDVKDAFWQ
IPINANNATTFGYVIDKFLIIDLRLQF
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mRNA from alignment at H-paniculata_contig11473:1426..1956+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11473.957.1 ID=mRNA_H-paniculata_contig11473.957.1|Name=mRNA_H-paniculata_contig11473.957.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=531bp|location=Sequence derived from alignment at H-paniculata_contig11473:1426..1956+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATCGTTTAGTATCCATCGTGGGCGAAGGGGTCCCAGTGGACAAAAGGGA AGAAGGAGGTCACCTAACAGCCGAAATGAGATGTGGCAACCACACCAGTG CCGATAGGCATACCCCACTCGTTCTAGACCAAGTACATCAGGATCTGAAA AACGGTAGAGCACTCATTTTTCCCCTCGAGATGGCAACATCCATTCCTGG ACTTCGAATTTCACCTTTGGGAGTGGTAGTGAAACCTAACAAAGTCAGAA TAATTCACGACCTCACCTTCACCCAACACAAGAAAACCGACAGCGTAAAT AGTCAAACAGACTTCAAACAAGCGCCGCCATGTGAACTCGGTCACGTCTT CCAAACAGTTTTACTCCTCATCCTCGCTCTGAGAAAGAAGTTCGGACCCA CCTCACGTATTTTACTGAGCAAAATGGACGTGAAAGACGCCTTTTGGCAA ATCCCAATCAATGCCAACAACGCTACGACATTCGGTTATGTCATTGACAA GTTCTTAATCATTGACCTTCGACTTCAATTC
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Coding sequence (CDS) from alignment at H-paniculata_contig11473:1426..1956+

>mRNA_H-paniculata_contig11473.957.1 ID=mRNA_H-paniculata_contig11473.957.1|Name=mRNA_H-paniculata_contig11473.957.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1062bp|location=Sequence derived from alignment at H-paniculata_contig11473:1426..1956+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATCGTTTAGTATCCATCGTGGGCGAAGGGGTCCCAGTGGACAAAAGGGA
AGAAGGAGGTCACCTAACAGCCGAAATGAGATGTGGCAACCACACCAGTG
CCGATAGGCATACCCCACTCGTTCTAGACCAAGTACATCAGGATCTGAAA
AACGGTAGAGCACTCATTTTTCCCCTCGAGATGGCAACATCCATTCCTGG
ACTTCGAATTTCACCTTTGGGAGTGGTAGTGAAACCTAACAAAGTCAGAA
TAATTCACGACCTCACCTTCACCCAACACAAGAAAACCGACAGCGTAAAT
AGTCAAACAGACTTCAAACAAGCGCCGCCATGTGAACTCGGTCACGTCTT
CCAAACAGTTTTACTCCTCATCCTCGCTCTGAGAAAGAAGTTCGGACCCA
CCTCACGTATTTTACTGAGCAAAATGGACGTGAAAGACGCCTTTTGGCAA
ATCCCAATCAATGCCAACAACGCTACGACATTCGGTTATGTCATTGACAA
GTTCTTAATCATTGACCTTCGACTTCAATTCGATCGTTTAGTATCCATCG
TGGGCGAAGGGGTCCCAGTGGACAAAAGGGAAGAAGGAGGTCACCTAACA
GCCGAAATGAGATGTGGCAACCACACCAGTGCCGATAGGCATACCCCACT
CGTTCTAGACCAAGTACATCAGGATCTGAAAAACGGTAGAGCACTCATTT
TTCCCCTCGAGATGGCAACATCCATTCCTGGACTTCGAATTTCACCTTTG
GGAGTGGTAGTGAAACCTAACAAAGTCAGAATAATTCACGACCTCACCTT
CACCCAACACAAGAAAACCGACAGCGTAAATAGTCAAACAGACTTCAAAC
AAGCGCCGCCATGTGAACTCGGTCACGTCTTCCAAACAGTTTTACTCCTC
ATCCTCGCTCTGAGAAAGAAGTTCGGACCCACCTCACGTATTTTACTGAG
CAAAATGGACGTGAAAGACGCCTTTTGGCAAATCCCAATCAATGCCAACA
ACGCTACGACATTCGGTTATGTCATTGACAAGTTCTTAATCATTGACCTT
CGACTTCAATTC
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