mRNA_H-paniculata_contig35206.9373.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig35206.9373.1
Unique NamemRNA_H-paniculata_contig35206.9373.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig35206.9373.1 vs. uniprot
Match: A0A6H5KDE6_9PHAE (Lactamase_B domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDE6_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 6.140e-33
Identity = 57/103 (55.34%), Postives = 79/103 (76.70%), Query Frame = 1
Query:    1 NTTVVMVVDLIFPGWVPFYSMALAEDVGDFYAALDELNNLDFDVLVGGHVSRLGTKEDVQVQVDFYADVLAGMKLGFSLISFADVGAGMGVANPASPNLGNGW 309
            +T+V  VVD+IFPGWVPF+S+A + ++G +Y A+DE+ + D DVLVGGH+SR+GTK DVQ+  DFY DVL G + G + +S ADV +G GV +P++PN GN W
Sbjct:  159 DTSVFFVVDVIFPGWVPFFSVAASSEIGGYYDAMDEILSYDMDVLVGGHLSRMGTKADVQLNKDFYDDVLEGARTGVTTVSVADVISGTGVFDPSNPNAGNLW 261          
BLAST of mRNA_H-paniculata_contig35206.9373.1 vs. uniprot
Match: D8LEX6_ECTSI (Beta-lactamase domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEX6_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 9.210e-30
Identity = 52/103 (50.49%), Postives = 72/103 (69.90%), Query Frame = 1
Query:    1 NTTVVMVVDLIFPGWVPFYSMALAEDVGDFYAALDELNNLDFDVLVGGHVSRLGTKEDVQVQVDFYADVLAGMKLGFSLISFADVGAGMGVANPASPNLGNGW 309
            +T+V MVVD +FPGW+P +   L  DV  +Y A+D +   DFDVL+ GH++R+GTK DVQ+  D +AD+L G   GF+ +S ADVGAG  V++P +PN GN W
Sbjct:  103 DTSVFMVVDTVFPGWIPLFPTNLNPDVASYYEAMDVILGYDFDVLMAGHLTRMGTKADVQLNRDLFADILEGATAGFAAVSQADVGAGTAVSDPTNPNAGNVW 205          
BLAST of mRNA_H-paniculata_contig35206.9373.1 vs. uniprot
Match: A0A7D7VBD4_9ARCH (MBL fold metallo-hydrolase n=1 Tax=Nitrosopumilus sp. TaxID=2024843 RepID=A0A7D7VBD4_9ARCH)

HSP 1 Score: 93.6 bits (231), Expect = 2.800e-21
Identity = 41/94 (43.62%), Postives = 64/94 (68.09%), Query Frame = 1
Query:    1 NTTVVMVVDLIFPGWVPFYSMALAEDVGDFYAALDELNNLDFDVLVGGHVSRLGTKEDVQVQVDFYADVLAGMKLGFSLISFADVGAGMGVANP 282
            N  V+M+VD++FPGW PF  +A+ +DV  F AA D++   DFD  +GGH++RLGT EDVQ+Q +++ D+ A   +    +SF ++G  +G +NP
Sbjct:  100 NQKVLMLVDVVFPGWTPFKDLAMVQDVTAFLAAHDKILEYDFDTYIGGHLTRLGTVEDVQIQKEYFQDIQASAGMTNQEVSFMEIGQEVGFSNP 193          
BLAST of mRNA_H-paniculata_contig35206.9373.1 vs. uniprot
Match: A0A654LUP5_9ARCH (Carbapenem-hydrolyzing beta-lactamase BlaB-1 n=1 Tax=Candidatus Nitrosocosmicus oleophilus TaxID=1353260 RepID=A0A654LUP5_9ARCH)

HSP 1 Score: 90.1 bits (222), Expect = 3.300e-19
Identity = 43/94 (45.74%), Postives = 62/94 (65.96%), Query Frame = 1
Query:    1 NTTVVMVVDLIFPGWVPFYSMALAEDVGDFYAALDELNNLDFDVLVGGHVSRLGTKEDVQVQVDFYADVLAGMKLGFSLISFADVGAGMGVANP 282
            N   +M VD+IFPGWVPF  +A+ ++V  F  A D +++ DFD LVGGH++RLGT EDV++Q +F  D++   K   S I+F D  +  G+ NP
Sbjct:  224 NQKTLMFVDVIFPGWVPFKDLAITKNVSGFVQAHDIVSSYDFDTLVGGHLTRLGTMEDVKIQKEFITDLINASKTANSKINFMDFVSKYGLTNP 317          
BLAST of mRNA_H-paniculata_contig35206.9373.1 vs. uniprot
Match: A0A3N5HH40_9BACT (MBL fold metallo-hydrolase n=1 Tax=bacterium TaxID=1869227 RepID=A0A3N5HH40_9BACT)

HSP 1 Score: 86.7 bits (213), Expect = 2.280e-18
Identity = 43/95 (45.26%), Postives = 61/95 (64.21%), Query Frame = 1
Query:    1 NTTVVMVVDLIFPGWVPFYSMALAEDVGDFYAALDE-LNNLDFDVLVGGHVSRLGTKEDVQVQVDFYADVLAGMKLGFSLISFADVGAGMGVANP 282
            N  V+M+VD+IFPGWVPF  +A+A+D   F  A D  L N DFD +VGGH++R+GT+ DV+VQ +F  D+          +SF D+ A +G  +P
Sbjct:  123 NQRVLMLVDIIFPGWVPFAYLAIAKDTAGFIGAHDTTLKNYDFDTIVGGHLTRIGTRADVEVQKEFVLDLERAAARANQNVSFMDIAARVGFDDP 217          
BLAST of mRNA_H-paniculata_contig35206.9373.1 vs. uniprot
Match: UPI001BDDF298 (MBL fold metallo-hydrolase n=1 Tax=Bacillus sp. SM2101 TaxID=2805366 RepID=UPI001BDDF298)

HSP 1 Score: 85.5 bits (210), Expect = 1.530e-17
Identity = 41/91 (45.05%), Postives = 56/91 (61.54%), Query Frame = 1
Query:   10 VVMVVDLIFPGWVPFYSMALAEDVGDFYAALDELNNLDFDVLVGGHVSRLGTKEDVQVQVDFYADVLAGMKLGFSLISFADVGAGMGVANP 282
            V+M VD+IFPGWVPF  +AL+ED+  +  A  ++   DFD LV GHV+RLGT+EDVQ Q+D+  DV    +          +G  +G  NP
Sbjct:  217 VLMAVDIIFPGWVPFRYLALSEDIPGYIEAHAKIMEYDFDTLVAGHVTRLGTREDVQTQIDYMNDVQKNAENALKTTDLNAIGQNVGFENP 307          
BLAST of mRNA_H-paniculata_contig35206.9373.1 vs. uniprot
Match: A0A0F8YYE2_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F8YYE2_9ZZZZ)

HSP 1 Score: 80.9 bits (198), Expect = 2.890e-17
Identity = 38/91 (41.76%), Postives = 55/91 (60.44%), Query Frame = 1
Query:   10 VVMVVDLIFPGWVPFYSMALAEDVGDFYAALDELNNLDFDVLVGGHVSRLGTKEDVQVQVDFYADVLAGMKLGFSLISFADVGAGMGVANP 282
            V+M+VD++FPGW PF  +A+AEDV  F  A D++   DFD  VGGH++RLGT EDV++Q  ++ D+            F  +   +G  NP
Sbjct:    7 VLMLVDVVFPGWTPFKDLAMAEDVPYFLTAHDKILEFDFDTYVGGHLTRLGTSEDVEIQKAYFDDIQKNAAEANQQADFMAIAQQVGFENP 97          
BLAST of mRNA_H-paniculata_contig35206.9373.1 vs. uniprot
Match: A0A838D836_9ARCH (MBL fold metallo-hydrolase n=2 Tax=Thaumarchaeota TaxID=651137 RepID=A0A838D836_9ARCH)

HSP 1 Score: 84.7 bits (208), Expect = 3.180e-17
Identity = 41/89 (46.07%), Postives = 58/89 (65.17%), Query Frame = 1
Query:   16 MVVDLIFPGWVPFYSMALAEDVGDFYAALDELNNLDFDVLVGGHVSRLGTKEDVQVQVDFYADVLAGMKLGFSLISFADVGAGMGVANP 282
            M+VD+IFPGWVPF  +A+  +V  F  A D +++ DFD LVGGH++RLG  EDV +Q +F  D++   K   S I+F D  +  G+ NP
Sbjct:  229 MLVDVIFPGWVPFKDLAITTNVPGFVQAHDIVSSYDFDTLVGGHLTRLGNVEDVNIQKEFITDLVNASKAANSKINFMDYVSKYGLTNP 317          
BLAST of mRNA_H-paniculata_contig35206.9373.1 vs. uniprot
Match: A0A6A7LIY9_9ARCH (MBL fold metallo-hydrolase n=1 Tax=Nitrososphaeraceae archaeon TaxID=2169593 RepID=A0A6A7LIY9_9ARCH)

HSP 1 Score: 84.3 bits (207), Expect = 4.070e-17
Identity = 42/91 (46.15%), Postives = 59/91 (64.84%), Query Frame = 1
Query:    1 NTTVVMVVDLIFPGWVPFYSMALAEDVGDFYAALD-ELNNLDFDVLVGGHVSRLGTKEDVQVQVDFYADVLAGMKLGFSLISFADVGAGMG 270
            N   +M+VD++FPGWVPF  +A+AEDV  F  A D  LNN DFD  VGGH++RLGT++DV  Q +F +D+        S + F+D+   +G
Sbjct:  195 NQKTLMLVDVVFPGWVPFVYLAIAEDVAGFIKAHDIALNNYDFDTFVGGHLTRLGTRDDVITQQEFVSDLEKAAGKANSEVQFSDIAKQVG 285          
BLAST of mRNA_H-paniculata_contig35206.9373.1 vs. uniprot
Match: UPI0018E48D84 (MBL fold metallo-hydrolase n=1 Tax=Geodermatophilus chilensis TaxID=2035835 RepID=UPI0018E48D84)

HSP 1 Score: 83.6 bits (205), Expect = 5.460e-17
Identity = 40/100 (40.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:   10 VVMVVDLIFPGWVPFYSMALAEDVGDFYAALDELNNLDFDVLVGGHVSRLGTKEDVQVQVDFYADVLAGMKLGFSLISFADVGAGMGVANPASPNLGNGW 309
            ++M +D+I PGWVPF  ++  +D+  +  A D++   DFDVLV GHV+RLG +EDV+VQ ++  D+ A        +  + V    GVA+P+ P  GN W
Sbjct:  168 ILMKIDVICPGWVPFKDLSHVKDMPGYLKAHDDVLTYDFDVLVAGHVARLGAREDVEVQREYVMDLKAHATEAIETVDISRVFEESGVADPSRPGAGNPW 267          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig35206.9373.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KDE6_9PHAE6.140e-3355.34Lactamase_B domain-containing protein n=1 Tax=Ecto... [more]
D8LEX6_ECTSI9.210e-3050.49Beta-lactamase domain protein n=1 Tax=Ectocarpus s... [more]
A0A7D7VBD4_9ARCH2.800e-2143.62MBL fold metallo-hydrolase n=1 Tax=Nitrosopumilus ... [more]
A0A654LUP5_9ARCH3.300e-1945.74Carbapenem-hydrolyzing beta-lactamase BlaB-1 n=1 T... [more]
A0A3N5HH40_9BACT2.280e-1845.26MBL fold metallo-hydrolase n=1 Tax=bacterium TaxID... [more]
UPI001BDDF2981.530e-1745.05MBL fold metallo-hydrolase n=1 Tax=Bacillus sp. SM... [more]
A0A0F8YYE2_9ZZZZ2.890e-1741.76Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A838D836_9ARCH3.180e-1746.07MBL fold metallo-hydrolase n=2 Tax=Thaumarchaeota ... [more]
A0A6A7LIY9_9ARCH4.070e-1746.15MBL fold metallo-hydrolase n=1 Tax=Nitrososphaerac... [more]
UPI0018E48D845.460e-1740.00MBL fold metallo-hydrolase n=1 Tax=Geodermatophilu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig35206contigH-paniculata_contig35206:982..2013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.8
Seed ortholog evalue8.9e-23
Seed eggNOG ortholog2880.D8LEX6
Hectar predicted targeting categoryother localisation
EggNOG OGs2CJFE@1,2SA2M@2759
Ec32 ortholog descriptionBeta-lactamase-like
Ec32 orthologEc-21_005930.2
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size312
Cds size297
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig35206.9373.1prot_H-paniculata_contig35206.9373.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig35206 982..1998 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930088.3903282-CDS-H-paniculata_contig35206:981..11781622930088.3903282-CDS-H-paniculata_contig35206:981..1178Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35206 982..1178 -
1691481141.135759-CDS-H-paniculata_contig35206:981..11781691481141.135759-CDS-H-paniculata_contig35206:981..1178Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35206 982..1178 -
1622930088.4094658-CDS-H-paniculata_contig35206:1448..15191622930088.4094658-CDS-H-paniculata_contig35206:1448..1519Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35206 1449..1519 -
1691481141.1462564-CDS-H-paniculata_contig35206:1448..15191691481141.1462564-CDS-H-paniculata_contig35206:1448..1519Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35206 1449..1519 -
1622930088.424934-CDS-H-paniculata_contig35206:1969..19981622930088.424934-CDS-H-paniculata_contig35206:1969..1998Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35206 1970..1998 -
1691481141.1553447-CDS-H-paniculata_contig35206:1969..19981691481141.1553447-CDS-H-paniculata_contig35206:1969..1998Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35206 1970..1998 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930088.4404762-UTR-H-paniculata_contig35206:1998..20131622930088.4404762-UTR-H-paniculata_contig35206:1998..2013Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig35206 1999..2013 -
1691481141.1643808-UTR-H-paniculata_contig35206:1998..20131691481141.1643808-UTR-H-paniculata_contig35206:1998..2013Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig35206 1999..2013 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig35206.9373.1

>prot_H-paniculata_contig35206.9373.1 ID=prot_H-paniculata_contig35206.9373.1|Name=mRNA_H-paniculata_contig35206.9373.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp
MVVDLIFPGWVPFYSMALAEDVGDFYAALDELNNLDFDVLVGGHVSRLGT
KEDVQVQVDFYADVLAGMKLGFSLISFADVGAGMGVANPASPNLGNGW*
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mRNA from alignment at H-paniculata_contig35206:982..2013-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig35206.9373.1 ID=mRNA_H-paniculata_contig35206.9373.1|Name=mRNA_H-paniculata_contig35206.9373.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1032bp|location=Sequence derived from alignment at H-paniculata_contig35206:982..2013- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACACCACCGTTGTCATGGTTGTCGACCTCATCTTCCCTGGCTGGTGAGT CAACCTCTCGTGTGCTCTTATTGCTGAATCAACGATGCAGCAACAATTGA GGCGTTCGTGGGTTCGATTTTTTTATTCGCAAGAGTCATGTGGTCGTACT TTTTGTAATGAACGGCGGCGAAAGCTTTTTTGGTGAGTGGTGGATGACCT ACGTGTTGCGGGGCTAAACCGAATGCATGAACACCTTGTCGCCCATCCAT TCTCTTCCCATACTCATGTATTCTCCCTGATGAATGCCTCGCCCCTGTTG TGCGTCATGTGTACATTCACTTCACTTTCGTTGTCGCGATGTTGTGCGGT AAACACACATGCCTTTGAGCTGAATTTTGGTGAAAAATCACTTTTACCCC GCAGTCAGAATTCACACTTACCCTATATCGCAAGAAACCCCTCAGCAACT CATTCCGTCCGCAATTTTCTTCGCCATTCTTGATTCTGCAAAAGGGTCCC GTTCTACTCGATGGCCCTGGCGGAGGACGTTGGGGATTTCTACGCTGCTC TCGATGAACTCAACAGTGAGTCTACATTACGTTACTGATTGTGCGACGTC GTACACGTTTCCACCAGTACTACCCATTTATCATACTATATATTCATCGA TTTGTTCGCTCATCAGATGTGCGCTTGATTTCAATTGCTGATTCGTTTCT TCACCCAGTCATGTATTTGCCCTGTCAACGATTTGTTCGTTCATCCATTA GATCGTTCGTTTTTTAATTCCTTCGTCGTCGCGGGGAATGCGCGCGACAT GCTATGCTATGCTATGCTCCACTTGCACCGAACAGATCTCGACTTTGACG TCCTAGTGGGTGGACACGTTTCCCGACTGGGAACCAAGGAAGATGTTCAG GTCCAGGTGGACTTCTACGCGGACGTTCTCGCCGGAATGAAGCTCGGATT CAGCCTCATTTCCTTCGCTGATGTCGGCGCTGGCATGGGCGTGGCGAATC CAGCCAGCCCCAACTTGGGCAACGGATGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig35206:982..2013-

>mRNA_H-paniculata_contig35206.9373.1 ID=mRNA_H-paniculata_contig35206.9373.1|Name=mRNA_H-paniculata_contig35206.9373.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at H-paniculata_contig35206:982..2013- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTGTCGACCTCATCTTCCCTGGCTGATGGTTGTCGACCTCATCTTC
CCTGGCTGGGTCCCGTTCTACTCGATGGCCCTGGCGGAGGACGTTGGGGA
TTTCTACGCTGCTCTCGATGAACTCAACAGGTCCCGTTCTACTCGATGGC
CCTGGCGGAGGACGTTGGGGATTTCTACGCTGCTCTCGATGAACTCAACA
ATCTCGACTTTGACGTCCTAGTGGGTGGACACGTTTCCCGACTGGGAACC
AAGGAAGATGTTCAGGTCCAGGTGGACTTCTACGCGGACGTTCTCGCCGG
AATGAAGCTCGGATTCAGCCTCATTTCCTTCGCTGATGTCGGCGCTGGCA
TGGGCGTGGCGAATCCAGCCAGCCCCAACTTGGGCAACGGATGGTGAATC
TCGACTTTGACGTCCTAGTGGGTGGACACGTTTCCCGACTGGGAACCAAG
GAAGATGTTCAGGTCCAGGTGGACTTCTACGCGGACGTTCTCGCCGGAAT
GAAGCTCGGATTCAGCCTCATTTCCTTCGCTGATGTCGGCGCTGGCATGG
GCGTGGCGAATCCAGCCAGCCCCAACTTGGGCAACGGATGGTGA
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