mRNA_H-paniculata_contig35198.9365.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig35198.9365.1
Unique NamemRNA_H-paniculata_contig35198.9365.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig35198.9365.1 vs. uniprot
Match: D8LKK6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKK6_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 9.770e-22
Identity = 45/62 (72.58%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:   55 MYREQEADEHSEDEDFKGPMKMDAFERPIRKRRVIKSRAINWTLEDRRDFISGGGVKYVGNK 240
            MYREQEA+EHSEDED++GP K DAFERP  KRR IK+RAI W LEDRRD   GGG+KY G+K
Sbjct:    1 MYREQEAEEHSEDEDYEGPGKFDAFERPAFKRRTIKTRAIQWALEDRRDHAQGGGIKYTGDK 62
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig35198.9365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKK6_ECTSI9.770e-2272.58Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig35198contigH-paniculata_contig35198:470..1489 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size243
Cds size243
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930087.758003-CDS-H-paniculata_contig35198:469..5591622930087.758003-CDS-H-paniculata_contig35198:469..559Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35198 470..559 +
1691481140.8922815-CDS-H-paniculata_contig35198:469..5591691481140.8922815-CDS-H-paniculata_contig35198:469..559Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35198 470..559 +
1622930087.7741044-CDS-H-paniculata_contig35198:1336..14891622930087.7741044-CDS-H-paniculata_contig35198:1336..1489Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35198 1337..1489 +
1691481140.9047768-CDS-H-paniculata_contig35198:1336..14891691481140.9047768-CDS-H-paniculata_contig35198:1336..1489Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35198 1337..1489 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig35198.9365.1prot_H-paniculata_contig35198.9365.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig35198 470..1489 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig35198.9365.1

>prot_H-paniculata_contig35198.9365.1 ID=prot_H-paniculata_contig35198.9365.1|Name=mRNA_H-paniculata_contig35198.9365.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=81bp
QVTRPPFEDPTLFVKPAYMYREQEADEHSEDEDFKGPMKMDAFERPIRKR
RVIKSRAINWTLEDRRDFISGGGVKYVGNK*
back to top

mRNA from alignment at H-paniculata_contig35198:470..1489+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig35198.9365.1 ID=mRNA_H-paniculata_contig35198.9365.1|Name=mRNA_H-paniculata_contig35198.9365.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1020bp|location=Sequence derived from alignment at H-paniculata_contig35198:470..1489+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTAACGAGACCTCCTTTCGAGGACCCGACGCTGTTTGTCAAGCCCGC
CTACATGTACCGCGAGCAGGAGGCAGACGAGCATAGCGAGGTAGGTTTTT
ATTACCTATATCCTCTGATTCACAAAAACTAAGTAACGTTTTTGTGGCAC
TACTAAATAGTACTTGAATGATAATTCCTGAACGATCTCCACTTTTTGTT
TTTTAAAAACCACGATTTGCCATTTGTTGAAATGTTCAACCGTTCGTTCG
TTTTTCCCAAATTTTTGGTGTTTTTTCTCCCAAGAGAATCCGGGTAGGTC
ACGCGGAGCACATTGTCCCCAGAGGACGTATGTAAAATCACTTTTTTTTT
CTTTTTTCTTTTTTCTAGGAAGCGTGGCAGCAAGAACGCTCAGAAATCGC
TGGTGTAAAAACATCTAAATCCATCAGAGGCTAGCTTTTCGATCGATGCC
ACCAAGTGACTCAACCCCTCAAGAGTCTTTCGGTGGAGCGTGAGATACAT
ACGATCCGCCAAAGATATTTATTCTTTTTTTTCAAATAGAATAGGTGTTT
TAACATATTATACAACCGTTTGGCGGGGAAACGAAACAGGCGCACGATTG
CAGACTTCCAGTCCGCAGGGTGGTGGCGAGTTTTTGCTTCTTGCTTTGTT
CGCGGATGTACCTTTTTTGGTCAAATTATATATAATACCTTATTCGGACA
AACTACGTTTGCCACTTTGGGGAAAAAAAAGTATGTGTAACATTTTGTGA
CAAACGATATTTTCCTTTTTCTGCACAAATTACATCTACTTTTTATGTGA
CGAATTACGTGTACTTTTTTCGACGAATAATCCCGCGTATTGTGCATATT
GTGTGTACCTTTTTCAGGACGAAGATTTCAAGGGGCCTATGAAGATGGAC
GCCTTCGAACGCCCGATACGCAAACGGCGAGTGATCAAGAGTCGAGCCAT
CAATTGGACGCTGGAAGATCGCAGGGATTTCATAAGTGGAGGAGGCGTGA
AGTACGTGGGCAATAAGTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig35198:470..1489+

>mRNA_H-paniculata_contig35198.9365.1 ID=mRNA_H-paniculata_contig35198.9365.1|Name=mRNA_H-paniculata_contig35198.9365.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at H-paniculata_contig35198:470..1489+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTAACGAGACCTCCTTTCGAGGACCCGACGCTGTTTGTCAAGCCCGC
CTACATGTACCGCGAGCAGGAGGCAGACGAGCATAGCGAGCAGGTAACGA
GACCTCCTTTCGAGGACCCGACGCTGTTTGTCAAGCCCGCCTACATGTAC
CGCGAGCAGGAGGCAGACGAGCATAGCGAGGACGAAGATTTCAAGGGGCC
TATGAAGATGGACGCCTTCGAACGCCCGATACGCAAACGGCGAGTGATCA
AGAGTCGAGCCATCAATTGGACGCTGGAAGATCGCAGGGATTTCATAAGT
GGAGGAGGCGTGAAGTACGTGGGCAATAAGTGAGACGAAGATTTCAAGGG
GCCTATGAAGATGGACGCCTTCGAACGCCCGATACGCAAACGGCGAGTGA
TCAAGAGTCGAGCCATCAATTGGACGCTGGAAGATCGCAGGGATTTCATA
AGTGGAGGAGGCGTGAAGTACGTGGGCAATAAGTGA
back to top