prot_H-paniculata_contig1144.936.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1144.936.1
Unique Nameprot_H-paniculata_contig1144.936.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length125
Homology
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BLAST of mRNA_H-paniculata_contig1144.936.1 vs. uniprot
Match: D7FKN3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKN3_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 9.810e-23
Identity = 52/76 (68.42%), Postives = 60/76 (78.95%), Query Frame = 0 
Query:    1 MAKHRQNKGTKKHVKNRPRKSRLSDINRTPVEHPIE-SSNAEYPGKPAVYAILEEAPPGIDTKASVIEAKAAAEWD 75
            MAKHRQNKGTKKHVKNRPRKSRLSD NR P ++ IE ++N  +PG P V+ +  E   GIDTKASVIEA A+AEWD
Sbjct:   48 MAKHRQNKGTKKHVKNRPRKSRLSDRNRKPTDYSIEVNTNGNFPGAPPVFELESEPEEGIDTKASVIEALASAEWD 123
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BLAST of mRNA_H-paniculata_contig1144.936.1 vs. uniprot
Match: A0A836CBS4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBS4_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 4.920e-10
Identity = 34/57 (59.65%), Postives = 40/57 (70.18%), Query Frame = 0 
Query:    1 MAKHRQNKGTKKHVKNRPRKSRLSDINRTPVEHPIE--SSNAEYPGKPAVYAILEEA 55
            MAKH Q KG KKH KNRP+KS  SD N  P E+ +E  S+  +YPGKP VY I+EEA
Sbjct:   47 MAKHAQAKGAKKHQKNRPKKSNPSDRNHKPAEYSLEIMSNGRDYPGKPPVYEIVEEA 103
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1144.936.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKN3_ECTSI9.810e-2368.42Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CBS4_9STRA4.920e-1059.65Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020526Ribosomal protein L6, chloroplastPFAMPF17257DUF5323coord: 6..34
e-value: 1.1E-6
score: 28.4
NoneNo IPR availablePRODOMPD069352coord: 6..57
e-value: 0.006
score: 87.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1144contigH-paniculata_contig1144:3078..4152 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1144.936.1mRNA_H-paniculata_contig1144.936.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1144 3046..5347 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1144.936.1 ID=prot_H-paniculata_contig1144.936.1|Name=mRNA_H-paniculata_contig1144.936.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp
MAKHRQNKGTKKHVKNRPRKSRLSDINRTPVEHPIESSNAEYPGKPAVYA
ILEEAPPGIDTKASVIEAKAAAEWDQYVADAIASGERPAVLPPMRVPDKA
GIAAQMKEFMYEDDRRHQKKEQVA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020526Ribosomal_L6_chp