mRNA_H-paniculata_contig35156.9357.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig35156.9357.1
Unique NamemRNA_H-paniculata_contig35156.9357.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig35156.9357.1 vs. uniprot
Match: D7FJ15_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ15_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 1.670e-10
Identity = 30/52 (57.69%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:  127 KTEGDGMEIGQAEDAIVLSLPITVDNMEMELTIFEGDEPMDVIQAFCKENMP 282
            K E + M I   E+ ++LSLPITVDN+  EL IFEGD+P+DV+ AFC++NMP
Sbjct:  153 KGEDNYMWIEHEEENVLLSLPITVDNVMKELVIFEGDQPLDVVLAFCRDNMP 204
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BLAST of mRNA_H-paniculata_contig35156.9357.1 vs. uniprot
Match: A0A6H5KLN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLN5_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 2.250e-8
Identity = 28/52 (53.85%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:  127 KTEGDGMEIGQAEDAIVLSLPITVDNMEMELTIFEGDEPMDVIQAFCKENMP 282
            K E + M I   ++ ++LSLPITVDN+  EL I +GD+P+DV+ AFC+ENMP
Sbjct:  292 KGEDNYMWIEDEKENVLLSLPITVDNVLKELVIVKGDQPLDVVLAFCRENMP 343
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig35156.9357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJ15_ECTSI1.670e-1057.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KLN5_9PHAE2.250e-853.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig35156contigH-paniculata_contig35156:1272..1824 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_004800.1
Exons2
Model size283
Cds size282
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930086.8626084-CDS-H-paniculata_contig35156:1271..13881622930086.8626084-CDS-H-paniculata_contig35156:1271..1388Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35156 1272..1388 -
1691481140.6116486-CDS-H-paniculata_contig35156:1271..13881691481140.6116486-CDS-H-paniculata_contig35156:1271..1388Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35156 1272..1388 -
1622930086.87334-CDS-H-paniculata_contig35156:1659..18241622930086.87334-CDS-H-paniculata_contig35156:1659..1824Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35156 1660..1824 -
1691481140.6225247-CDS-H-paniculata_contig35156:1659..18241691481140.6225247-CDS-H-paniculata_contig35156:1659..1824Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35156 1660..1824 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig35156.9357.1prot_H-paniculata_contig35156.9357.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig35156 1272..1824 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig35156.9357.1

>prot_H-paniculata_contig35156.9357.1 ID=prot_H-paniculata_contig35156.9357.1|Name=mRNA_H-paniculata_contig35156.9357.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=94bp
MGQKTKEQKNHKQEQYHENPKDSLKNPPLQTNIERVIEGDLEKTEGDGME
IGQAEDAIVLSLPITVDNMEMELTIFEGDEPMDVIQAFCKENMP
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mRNA from alignment at H-paniculata_contig35156:1272..1824-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig35156.9357.1 ID=mRNA_H-paniculata_contig35156.9357.1|Name=mRNA_H-paniculata_contig35156.9357.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=553bp|location=Sequence derived from alignment at H-paniculata_contig35156:1272..1824- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCCAGAAGACGAAAGAACAAAAGAACCACAAGCAGGAGCAATACCA
CGAAAACCCTAAGGATTCCCTGAAGAACCCACCTCTCCAAACGAACATCG
AACGCGTAATCGAGGGCGACCTCGAGAAAACCGAGGGAGATGGTATGGAA
ATTGGCCAGGCAGAGGTATGTGACTTAAGAGAACAAGAATGAAAGAAAAT
TGTTTCTCAGCCCACTTTTCATTATATTAAAGCCGATAATTAACACGGTT
ACCAATCTTTATCGACAGCGGCTTAACCCGTACGAAAGCGAACATTACGC
TTTTTTGTCAAGCCAAAGCAGTGTATGCTCATCTTGGTTACCGGTAGCCG
GTGCTCTCTTTTCACATCCAAGGCAGTGCACGTCCGAGCCTTATTGCTTA
TTGAATTAATCGTGTCGACTCTTCTCTTCTCCTCAGGACGCCATTGTGTT
GTCGCTACCTATTACCGTTGACAACATGGAGATGGAGCTAACCATCTTCG
AGGGTGATGAGCCGATGGATGTCATACAAGCGTTCTGCAAGGAGAACATG
CCT
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Coding sequence (CDS) from alignment at H-paniculata_contig35156:1272..1824-

>mRNA_H-paniculata_contig35156.9357.1 ID=mRNA_H-paniculata_contig35156.9357.1|Name=mRNA_H-paniculata_contig35156.9357.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=564bp|location=Sequence derived from alignment at H-paniculata_contig35156:1272..1824- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCCAGAAGACGAAAGAACAAAAGAACCACAAGCAGGAGCAATACCA
CGAAAACCCTAAGGATTCCCTGAAGAACCCACCTCTCCAAACGAACATCG
AACGCGTAATCGAGGGCGACCTCGAGAAAACCGAGGGAGATGGTATGGAA
ATTGGCCAGGCAGAGATGGGCCAGAAGACGAAAGAACAAAAGAACCACAA
GCAGGAGCAATACCACGAAAACCCTAAGGATTCCCTGAAGAACCCACCTC
TCCAAACGAACATCGAACGCGTAATCGAGGGCGACCTCGAGAAAACCGAG
GGAGATGGTATGGAAATTGGCCAGGCAGAGGACGCCATTGTGTTGTCGCT
ACCTATTACCGTTGACAACATGGAGATGGAGCTAACCATCTTCGAGGGTG
ATGAGCCGATGGATGTCATACAAGCGTTCTGCAAGGAGAACATGCCTGAC
GCCATTGTGTTGTCGCTACCTATTACCGTTGACAACATGGAGATGGAGCT
AACCATCTTCGAGGGTGATGAGCCGATGGATGTCATACAAGCGTTCTGCA
AGGAGAACATGCCT
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