mRNA_H-paniculata_contig1144.936.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1144.936.1
Unique NamemRNA_H-paniculata_contig1144.936.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1144.936.1 vs. uniprot
Match: D7FKN3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKN3_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 9.430e-24
Identity = 58/86 (67.44%), Postives = 66/86 (76.74%), Query Frame = 3 
Query:    3 VARGGCGGLFMAKHRQNKGTKKHVKNRPRKSRLSDINRTPVEHPIE-SSNAEYPGKPAVYAILEEAPPGIDTKASVIEAKAAAEWD 257
             ARGG G L MAKHRQNKGTKKHVKNRPRKSRLSD NR P ++ IE ++N  +PG P V+ +  E   GIDTKASVIEA A+AEWD
Sbjct:   38 AARGGNGALEMAKHRQNKGTKKHVKNRPRKSRLSDRNRKPTDYSIEVNTNGNFPGAPPVFELESEPEEGIDTKASVIEALASAEWD 123
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BLAST of mRNA_H-paniculata_contig1144.936.1 vs. uniprot
Match: A0A836CBS4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBS4_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 4.710e-10
Identity = 37/67 (55.22%), Postives = 43/67 (64.18%), Query Frame = 3 
Query:    3 VARGGCGGLFMAKHRQNKGTKKHVKNRPRKSRLSDINRTPVEHPIE--SSNAEYPGKPAVYAILEEA 197
              R   G L MAKH Q KG KKH KNRP+KS  SD N  P E+ +E  S+  +YPGKP VY I+EEA
Sbjct:   37 AVRSSRGVLHMAKHAQAKGAKKHQKNRPKKSNPSDRNHKPAEYSLEIMSNGRDYPGKPPVYEIVEEA 103
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1144.936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKN3_ECTSI9.430e-2467.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CBS4_9STRA4.710e-1055.22Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1144contigH-paniculata_contig1144:3046..5347 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein L6, chloroplast
Ec32 orthologEc-09_000870.1
Exons2
Model size1602
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1144.936.1prot_H-paniculata_contig1144.936.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1144 3078..4152 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928851.8141644-UTR-H-paniculata_contig1144:3045..30771622928851.8141644-UTR-H-paniculata_contig1144:3045..3077Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1144 3046..3077 +
1691480644.82463-UTR-H-paniculata_contig1144:3045..30771691480644.82463-UTR-H-paniculata_contig1144:3045..3077Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1144 3046..3077 +
1622928851.8577127-UTR-H-paniculata_contig1144:4152..53471622928851.8577127-UTR-H-paniculata_contig1144:4152..5347Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1144 4153..5347 +
1691480644.8493927-UTR-H-paniculata_contig1144:4152..53471691480644.8493927-UTR-H-paniculata_contig1144:4152..5347Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1144 4153..5347 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928851.8239226-CDS-H-paniculata_contig1144:3077..31371622928851.8239226-CDS-H-paniculata_contig1144:3077..3137Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1144 3078..3137 +
1691480644.8333786-CDS-H-paniculata_contig1144:3077..31371691480644.8333786-CDS-H-paniculata_contig1144:3077..3137Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1144 3078..3137 +
1622928851.8414457-CDS-H-paniculata_contig1144:3837..41521622928851.8414457-CDS-H-paniculata_contig1144:3837..4152Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1144 3838..4152 +
1691480644.841297-CDS-H-paniculata_contig1144:3837..41521691480644.841297-CDS-H-paniculata_contig1144:3837..4152Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1144 3838..4152 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1144.936.1

>prot_H-paniculata_contig1144.936.1 ID=prot_H-paniculata_contig1144.936.1|Name=mRNA_H-paniculata_contig1144.936.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp
MAKHRQNKGTKKHVKNRPRKSRLSDINRTPVEHPIESSNAEYPGKPAVYA
ILEEAPPGIDTKASVIEAKAAAEWDQYVADAIASGERPAVLPPMRVPDKA
GIAAQMKEFMYEDDRRHQKKEQVA*
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mRNA from alignment at H-paniculata_contig1144:3046..5347+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1144.936.1 ID=mRNA_H-paniculata_contig1144.936.1|Name=mRNA_H-paniculata_contig1144.936.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2302bp|location=Sequence derived from alignment at H-paniculata_contig1144:3046..5347+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTGGCGCGAGGTGGATGCGGCGGGCTTTTCATGGCTAAGCACCGGCAG
AACAAGGGTACGAAGAAGCACGTCAAGAACAGGCCTCGCAAGGTGGGAAT
CGAGATGTCTACGAAAATACGGTAGTCATGGTCTTGTGTATGTCTTTTAT
ATGGAGTAAGCGCAATACCGCAAAACCGGAAATTTGCTACATGTGGCTAT
GACCTGTATTGCATTATTACTGGCAGTGGTGCTTGACACGATAGATTTGA
TACTATGCTTTTTCAATGTACTCGTACAGCCGACAAAGAACATAGTATGG
TAAATGGCCATATTCCGGTCAGTGCTTGGCTTTTCAATGTGTGTGCACAC
GTTTAATTCTGCAGAGTCTAGTACAGAGGATCTCGAGGAGAGGTAGCTGC
TAATGGTTTCTCTTCTTCTACGCCGCACAAATAGTCACAAGTGTTATACC
CGATTTCTCCAGATCCACAGTAGTGCCCTGGACTGTCCATATACTGACTA
TTTCACTTGAAGTTTGTTCACATCTAGTAGGAGATTTAAATTACACGTCA
ACATGGAGAAGAAAAACAATTCGCATCAAACTATTTTTACTTTCCTCCTT
TTACTGATACCAGGTTGTACAATTTTTGCTGTCAAGTGTAAGCGCCTGAA
TTTTGATGTCACTTGCGTAGCCTCAACTCACCCCCCCCCCTTCCGCTTAA
CCCCTGCTCTCTCACCAAACCACCCTATATCCGTGGTGCCGTTTGTACGA
TCCAAAATCCAAATTCTACTATTGGACAAACGAAACTGCTAGTCGCGGCT
GTCGGATATCAACCGTACGCCGGTGGAGCACCCCATCGAATCGAGCAATG
CCGAGTACCCAGGTAAGCCCGCGGTCTATGCCATTTTGGAAGAGGCTCCG
CCCGGAATTGACACCAAGGCATCCGTCATCGAGGCAAAAGCTGCCGCGGA
GTGGGACCAGTATGTCGCGGACGCCATTGCGTCTGGTGAACGCCCCGCCG
TGCTCCCCCCAATGCGGGTACCGGACAAGGCTGGTATCGCGGCACAAATG
AAGGAGTTCATGTATGAAGACGACCGTCGTCATCAGAAGAAGGAGCAAGT
GGCTTAATTTGACCCAGGACGAATCTGTCCGGTCCGGTGTGATGCGATGT
GGTTAGAGTCGGTTCGGTTTCGTGCCGTTCAGGGAGAACCACTTGTTCTC
GCACGTCAATTGGGTTTTGTCATCATCAGGCTGTTTTTCGTGTTTTTTCT
CGTTAGAAGGTGAATCTGAGATACTCGAGCGAGCCTTTTTTGTTTGTGCC
CTCTTTTTTGTACGGTATTGGAAGCACGTGGGGAAGGGCGGTGGTAGGGG
GTGCCTTTGGAGGTAGCTTAAGCAATGTCTTATTTTGGTCGGGAGGAGTG
TAACAGCTTCAGCTGAGAGGCCCCGGGATGGCGACATGGATAGAGCTTAT
GTGGCCACGAACAAACTCGGCTTTGGACAGTATTGATAAACCGGACTCTT
TTTCCCGTCCCCCCGCCTTGCCTCCTTCTCGCGCCAACAAGTGACTTCTT
GTGCGCTTCCCTGAAGTGCGTAACCGCGCGGTGACAACACATTTGGGTTT
CCTTGCATTTCTGAATTGTTGGAGCGAAAGCCGTCGAATGGTTTGAACGT
CTTCTCCTGGTGTGTTGTGTCTCATGTTGGATCTACGAAGGACATGAAAT
AACGGAAGCCAAAAATCGTCGATTCAAAGCACGGTGCTGACGAGAAGGGG
CGGGAAAGAGTGGGAATTAAAGCGGACTGCGTCGAGGGCGGAGTACGATC
TGATTCAAGGAATACACATAAGCAGCGAACTTTTTCCCGGTATCACGAAT
TTACCCTTACAAGCAGCAGAGCACGAAGGGAGAGCCAATGCGTACTGCCG
CTCTCCGTAGGCTGACTGCTTGCTAGTGAGCCTGTTGTACGATCGTTAGG
CTTGCAAGTGCATTACGGAGTCGAGGCCCTCGAAGAAGAGTTGTTCAGAT
CTTGGTTTATGCCGCATTCCATATTTATGCCGCGGGTTTTGGTAACTGCA
CAAGGACTATTTGTGTGAAGTTTTCATCTGTCGGAAACCTCGAAACGACG
GCGGTGGAAATCCGAAAATTCCCGCTATTTTGATCAGTCCCTGGAGTCGA
AGTCGGAAAACAACGTGAACGTTTTGTACAGTCGGTGATATTCTTGTCTT
TTGCACTCGATACAAGCTTTGCGCACAGGAAGAACCGTAAAAACTTGTTT
CAGCACTTTTTCGAGATGAATTTAACGAACGAAACTGAATTTCTTTCACG
GA
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Coding sequence (CDS) from alignment at H-paniculata_contig1144:3046..5347+

>mRNA_H-paniculata_contig1144.936.1 ID=mRNA_H-paniculata_contig1144.936.1|Name=mRNA_H-paniculata_contig1144.936.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at H-paniculata_contig1144:3046..5347+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTAAGCACCGGCAGAACAAGGGTACGAAGAAGCACGTCAAGAACAG
GCCTCGCAAGATGGCTAAGCACCGGCAGAACAAGGGTACGAAGAAGCACG
TCAAGAACAGGCCTCGCAAGTCGCGGCTGTCGGATATCAACCGTACGCCG
GTGGAGCACCCCATCGAATCGAGCAATGCCGAGTACCCAGGTAAGCCCGC
GGTCTATGCCATTTTGGAAGAGGCTCCGCCCGGAATTGACACCAAGGCAT
CCGTCATCGAGGCAAAAGCTGCCGCGGAGTGGGACCAGTATGTCGCGGAC
GCCATTGCGTCTGGTGAACGCCCCGCCGTGCTCCCCCCAATGCGGGTACC
GGACAAGGCTGGTATCGCGGCACAAATGAAGGAGTTCATGTATGAAGACG
ACCGTCGTCATCAGAAGAAGGAGCAAGTGGCTTAATCGCGGCTGTCGGAT
ATCAACCGTACGCCGGTGGAGCACCCCATCGAATCGAGCAATGCCGAGTA
CCCAGGTAAGCCCGCGGTCTATGCCATTTTGGAAGAGGCTCCGCCCGGAA
TTGACACCAAGGCATCCGTCATCGAGGCAAAAGCTGCCGCGGAGTGGGAC
CAGTATGTCGCGGACGCCATTGCGTCTGGTGAACGCCCCGCCGTGCTCCC
CCCAATGCGGGTACCGGACAAGGCTGGTATCGCGGCACAAATGAAGGAGT
TCATGTATGAAGACGACCGTCGTCATCAGAAGAAGGAGCAAGTGGCTTAA
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