mRNA_H-paniculata_contig3515.9354.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3515.9354.1
Unique NamemRNA_H-paniculata_contig3515.9354.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3515.9354.1 vs. uniprot
Match: A0A6H5JDG8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDG8_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 3.770e-13
Identity = 42/75 (56.00%), Postives = 56/75 (74.67%), Query Frame = 2 
Query:   77 DRAFRKWLDCKKKQATIERQAERQKQRLLEERRKLEASRRWKKRPVVCAYTYGARVDARRWSPPREKKMHSEATG 301
            +RAFR+WL  KK +A  +R+ +R+K+  LE+ R LE SRRWKKRPVVCAYTYGA+V AR W   RE+ + ++A G
Sbjct:  434 NRAFREWLGRKKGEAQADREVQRRKEENLEKIRVLEVSRRWKKRPVVCAYTYGAKVGAREWQD-REEGVRTQAEG 507
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3515.9354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JDG8_9PHAE3.770e-1356.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3515contigH-paniculata_contig3515:2057..2838 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size525
Cds size288
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3515.9354.1prot_H-paniculata_contig3515.9354.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3515 2257..2801 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930086.5387208-UTR-H-paniculata_contig3515:2056..22561622930086.5387208-UTR-H-paniculata_contig3515:2056..2256Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3515 2057..2256 -
1691481140.4943304-UTR-H-paniculata_contig3515:2056..22561691481140.4943304-UTR-H-paniculata_contig3515:2056..2256Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3515 2057..2256 -
1622930086.5945225-UTR-H-paniculata_contig3515:2801..28381622930086.5945225-UTR-H-paniculata_contig3515:2801..2838Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3515 2802..2838 -
1691481140.5248535-UTR-H-paniculata_contig3515:2801..28381691481140.5248535-UTR-H-paniculata_contig3515:2801..2838Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3515 2802..2838 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930086.558278-CDS-H-paniculata_contig3515:2256..24071622930086.558278-CDS-H-paniculata_contig3515:2256..2407Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3515 2257..2407 -
1691481140.5051167-CDS-H-paniculata_contig3515:2256..24071691481140.5051167-CDS-H-paniculata_contig3515:2256..2407Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3515 2257..2407 -
1622930086.573591-CDS-H-paniculata_contig3515:2664..28011622930086.573591-CDS-H-paniculata_contig3515:2664..2801Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3515 2665..2801 -
1691481140.5148308-CDS-H-paniculata_contig3515:2664..28011691481140.5148308-CDS-H-paniculata_contig3515:2664..2801Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3515 2665..2801 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3515.9354.1

>prot_H-paniculata_contig3515.9354.1 ID=prot_H-paniculata_contig3515.9354.1|Name=mRNA_H-paniculata_contig3515.9354.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp
MGREYKRPSQRERDRAFRKWLDCKKKQATIERQAERQKQRLLEERRKLEA
SRRWKKRPVVCAYTYGARVDARRWSPPREKKMHSEATGFVVKKTA*
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mRNA from alignment at H-paniculata_contig3515:2057..2838-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3515.9354.1 ID=mRNA_H-paniculata_contig3515.9354.1|Name=mRNA_H-paniculata_contig3515.9354.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=782bp|location=Sequence derived from alignment at H-paniculata_contig3515:2057..2838- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGTCTAGAGGTAACGATGGAGGGGAAGAGAGGGGCATGGGTAGGGAGT
ACAAACGACCTAGTCAGCGGGAGAGGGACAGGGCGTTTCGCAAGTGGCTC
GACTGCAAGAAGAAGCAAGCCACGATCGAGAGACAGGCGGAAAGGCAAAA
GCAGCGGCTCTTGGAGGAGCGCAGGTGAGGGCAAGGTGTGCACACATGCG
TGCATGCGTGAATCGGGGGAGCCCTGGTCTACTTTTTGACACGCACTCTG
TGCTGTAACTCTATTGTACTGTTGTTGTTGCTGTTGCTGCTGCTGCTTCT
TTGCTGTAGTTTTTTCGCCTGCCTTTTGAACAATCAGTCAGTAGTAAGCG
TTCTGAAACAGGAATGAGTACTCTATGTCTTATTGTTTTGCGTGCCGACG
TGTACGTGTTTCGACTGTGTCTCGCTTGCAGAAAGCTAGAGGCGTCTCGG
CGATGGAAGAAACGACCGGTAGTGTGTGCGTACACTTACGGGGCTAGGGT
CGACGCTCGCCGCTGGAGCCCGCCACGCGAGAAGAAAATGCACAGTGAAG
CGACTGGGTTTGTTGTCAAGAAGACAGCGTGAACGCAGTTTTTTGTCCCA
AGGAGATGGGACATAGTCGAGTCAATCATATTGACACTGACAAACACCTG
TGGTGGTTGTGGTGATGGTGGCGGTATGTAGAAGGTATGGTCATAAAAAG
AAACCCATCGTTTAAAATTCCTTGATCCAATGATGTTGATACCTGTGTTA
TTATTGTTAATGTTATTTTTGGTGTTGGTGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig3515:2057..2838-

>mRNA_H-paniculata_contig3515.9354.1 ID=mRNA_H-paniculata_contig3515.9354.1|Name=mRNA_H-paniculata_contig3515.9354.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at H-paniculata_contig3515:2057..2838- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTAGGGAGTACAAACGACCTAGTCAGCGGGAGAGGGACAGGGCGTT
TCGCAAGTGGCTCGACTGCAAGAAGAAGCAAGCCACGATCGAGAGACAGG
CGGAAAGGCAAAAGCAGCGGCTCTTGGAGGAGCGCAGATGGGTAGGGAGT
ACAAACGACCTAGTCAGCGGGAGAGGGACAGGGCGTTTCGCAAGTGGCTC
GACTGCAAGAAGAAGCAAGCCACGATCGAGAGACAGGCGGAAAGGCAAAA
GCAGCGGCTCTTGGAGGAGCGCAGAAAGCTAGAGGCGTCTCGGCGATGGA
AGAAACGACCGGTAGTGTGTGCGTACACTTACGGGGCTAGGGTCGACGCT
CGCCGCTGGAGCCCGCCACGCGAGAAGAAAATGCACAGTGAAGCGACTGG
GTTTGTTGTCAAGAAGACAGCGTGAAAAGCTAGAGGCGTCTCGGCGATGG
AAGAAACGACCGGTAGTGTGTGCGTACACTTACGGGGCTAGGGTCGACGC
TCGCCGCTGGAGCCCGCCACGCGAGAAGAAAATGCACAGTGAAGCGACTG
GGTTTGTTGTCAAGAAGACAGCGTGA
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