mRNA_H-paniculata_contig35098.9343.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig35098.9343.1 vs. uniprot
Match: A0A293MM55_ORNER (Reverse transcriptase, gag, polyprotein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MM55_ORNER) HSP 1 Score: 73.2 bits (178), Expect = 4.850e-11 Identity = 67/250 (26.80%), Postives = 118/250 (47.20%), Query Frame = 1
Query: 31 WNSDTGATDHMTSDETAFEDYTPALPGTMCEIANGKFVPVEGWRRLVLLVSQPRGKITGSNV--KQGCPRTRELGRNLISTRRVTDTSGKSSIYSANKARLGLGKESLLFNVSASSGLYVVEAVRSAAGTAKALTARKSSNRDVMDMHRLVAHASAQ----ITNYTAETAGVVLPDEWGVYKGCSTAEAHRFAMPKKSDKRSTRAAERLYVDLGGPMRVTSLGGSSYLIIIVDEHSRFQAIRFIKKKSDA 762
W+ D+GA+ HMT +++ T+ +A+GK +P +G +V V G G NV + + NL+S ++T+ +G + + + +FN + +G+Y + A S T +A AR S+ HR + H + + ++ A+ L E C T + R +++S+ + ++VDL GP+ V SLGGS Y++ +VD+HSR +RF+K K +A
Sbjct: 289 WSVDSGASSHMTGCRQILKNFRNDDEKTIT-LADGKTIPTQGVGTVVFEVKNGNGN--GKNVLTAKDVLYVPGMADNLLSVSKLTE-NGMDVRFVDEYCNVYF-RNQFVFNATKEAGIYRLRAKISRPNTQQASGARVSTAEL---WHRRMGHLNRETLVRMSRTEADRGMPKLKQEDFECVPCITGKHSRNPFNPSQERQSSSLLDLVHVDLCGPLPVCSLGGSRYILAVVDDHSRRITVRFLKSKDEA 530
BLAST of mRNA_H-paniculata_contig35098.9343.1 vs. uniprot
Match: A0A6A3VFT2_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3VFT2_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 6.470e-10 Identity = 59/251 (23.51%), Postives = 110/251 (43.82%), Query Frame = 1
Query: 31 WNSDTGATDHMTSDETAFEDYTPALPGTMCEIANGKFVPVEGWRRLVLLVSQPRGKITGSNVKQGCPRTRELGRNLISTRRVTDTSGKSSIYSANKARLG-LGKESLLFNVSASSGLYVVEAVRSAAGTAKALTARKSSNRDVMDMHRLVAHASAQIT-----NYTAETAGVVLPDEW-GVYKGCSTAEAHRFAMPKKSDKRSTRAAERLYVDLGGPMRVTSLGGSSYLIIIVDEHSRFQAIRFIKKKSDA 762
W D+GAT H+ +D+ F G + +A+G ++G +V V P G +K + +NL+S ++ + ++ K ++ G + ++ + GLY ++ + +A A ++ ++D+H + HA ++ N+ + A + +GC + + P DKR E L+ D+ GPM SLGGS YL++IVDE S ++ KS++
Sbjct: 148 WAVDSGATHHICNDKAKFAHLIERNEGEL-SVADGNKAAIKGVGTIVERVVLPNGDEREIEIKNALY-VPSMSKNLLSVPQINKSGKFQVVFDGTKMQIAHKGSKQVVATANLMDGLYWLQTPQRSANAA--------TSGKIVDLHARMGHAPVEVLRKMVDNHMIKDAKAPSKSSGPSLCRGCQQGKMVQKPFPSNHDKRRYDTFELLHFDICGPMEENSLGGSKYLLLIVDEASGCMKGFCLRAKSES 388
BLAST of mRNA_H-paniculata_contig35098.9343.1 vs. uniprot
Match: A0A6L2MFU5_TANCI (gag_pre-integrs domain-containing protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2MFU5_TANCI) HSP 1 Score: 69.7 bits (169), Expect = 6.820e-10 Identity = 66/246 (26.83%), Postives = 110/246 (44.72%), Query Frame = 1
Query: 40 DTGATDHMTSDETAFEDYTPALPGTMCEIANGKFVPVEGWRRLVLLVSQPRGKITGSNVKQGCPRTRELGRNLISTRRVTDTSGKSSIYSANKARLGLGKESLLFNVSASSGLYVVEAVRSAAGTAKALTARKSSNRDVMDMHRLVAHASAQITNYTAETAGVV-LPD----EWGVYKGCSTAEAHRFAMPKKSDKRSTRAAERLYVDLGGPMRVTSLGGSSYLIIIVDEHSRFQAIRFIKKKSDA 762
D+G+T HMTS+ ++ T+C N KF P+ G+ LV +G +T + V + L NL S + D + + + L LL + S LY + S + T L K++ HR+++H + N ++ V+ LP + +Y C ++A R K+ S L++DL GPMRV S+ G Y+++IVD++SR+ F+ K +A
Sbjct: 551 DSGSTKHMTSNLKLLCNFVEKFLRTVC-FGNDKFAPILGYGDLV------QGNVTINRVYY----VKGLNYNLFSVGQFCDADLEVAFRKSTCFVRDLKGNDLLVG-NRGSDLYTISLQESTSSTPLYLM-DKATPTQAWLWHRMLSHLNFDYINLLSKKDIVIGLPKLKYVKDQLYSSCKLSKAKRSLFKSKAVPSSKGRLNLLHMDLCGPMRVASINGKKYILVIVDDYSRYTGTEFLNKTLNA 783
BLAST of mRNA_H-paniculata_contig35098.9343.1 vs. uniprot
Match: K3WFC4_GLOUD (Integrase catalytic domain-containing protein n=7 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WFC4_GLOUD) HSP 1 Score: 68.9 bits (167), Expect = 1.310e-9 Identity = 62/251 (24.70%), Postives = 114/251 (45.42%), Query Frame = 1
Query: 31 WNSDTGATDHMTSDETAFEDYTPALPGTMCEIANGKFVPVEGWRRLVLLVSQPRGKITGSNVKQGCPRTRELGRNLISTRRVTDTSGKSSIYSANKAR-LGLGKESLLFNVSASSGLYVVEAVRSAAGTAKALTARKSSNRDVMDMHRLVAHASAQITNYTAETAGVVLPD------EWGVYKGCSTAEAHRFAMPKKSDKRSTRAAERLYVDLGGPMRVTSLGGSSYLIIIVDEHSRFQAIRFIKKKSDA 762
W D+GAT H+ +D++ F + G + +ANG + G + V+ P G++ V +G+NL+S ++ ++ ++ L ++ + GLY + V S + A+TA ++S+ + H + HAS+Q+ + A V + + +GC + + +KR+ E ++ D+ GPM V S+GGS YL++IVDE S ++ KSD+
Sbjct: 284 WAIDSGATHHICNDKSKFCELDERDHGDLV-VANGNKTKILGVGTVNERVALPNGEVRDLKVVNVLY-VPSVGKNLLSIPQINKSNKFQVVFDGPSMNVLSKSSSKVVATADFADGLYWLRVVPSEVSKS-AMTAVRASSASTL--HERMGHASSQVLRQLVDKAMVKDAEFSPNTQDLSTCRGCQQGKMVQKPFKSNEEKRTYGVFELIHFDICGPMEVESIGGSKYLLLIVDEASGSMKGFCLQNKSDS 529
BLAST of mRNA_H-paniculata_contig35098.9343.1 vs. uniprot
Match: A0A6A3HS94_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Eukaryota TaxID=2759 RepID=A0A6A3HS94_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 1.730e-9 Identity = 59/251 (23.51%), Postives = 110/251 (43.82%), Query Frame = 1
Query: 31 WNSDTGATDHMTSDETAFEDYTPALPGTMCEIANGKFVPVEGWRRLVLLVSQPRGKITGSNVKQGCPRTRELGRNLISTRRVTDTSGKSSIYSANKARLG-LGKESLLFNVSASSGLYVVEAVRSAAGTAKALTARKSSNRDVMDMHRLVAHASAQIT-----NYTAETAGVVLPDEW-GVYKGCSTAEAHRFAMPKKSDKRSTRAAERLYVDLGGPMRVTSLGGSSYLIIIVDEHSRFQAIRFIKKKSDA 762
W +D+GAT H+ +D+ F G + +A+G + G +V V P G +K + +NL+S ++ + ++ K ++ G + ++ + GLY ++ + +A A ++ ++D+H + HA ++ N+ + A + +GC + + P DKR E L+ D+ GPM SLGGS YL++IVDE S ++ KS++
Sbjct: 157 WAADSGATHHICNDKAKFAHLIERNEGEL-SVADGNKAAIMGVGTIVEQVVLPNGDEREIEIKNALY-VPSMSKNLLSVPQINKSGKFQVVFDGIKMQIAHKGSKQVVATANLMDGLYWLQTPQRSANAA--------TSGKIVDLHARMGHAPVEVLRKMVDNHMIKDAKAPSKSSGPSLCRGCQQGKMVQKPFPSNHDKRRYDTFELLHFDICGPMEENSLGGSKYLLLIVDEASGCMKGFCLRAKSES 397
BLAST of mRNA_H-paniculata_contig35098.9343.1 vs. uniprot
Match: A0A699HJP6_TANCI (Integrase, catalytic region, zinc finger, CCHC-type, peptidase aspartic, catalytic n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699HJP6_TANCI) HSP 1 Score: 67.4 bits (163), Expect = 4.200e-9 Identity = 64/239 (26.78%), Postives = 108/239 (45.19%), Query Frame = 1
Query: 58 HMTSDETAFEDYTPALPGTMCEIANGKFVPVEGWRRLVLLVSQPRGKITGSNVKQGCPRTRELGRNLISTRRVTDTSGKSSIYSANKARLGLGKESLLFNVSASSGLYVVEAVRSAAGTAKALTARKSSNRDVMDMHRLVAHASAQITNYTAETAGVV-LP----DEWGVYKGCSTAEAHRFAMPKKSDKRSTRAAERLYVDLGGPMRVTSLGGSSYLIIIVDEHSRFQAIRFIKKKSD 759
HMT + ++ GT+ + N + P+ G+ LV +G IT V + L NL S + D + + + GL + LL S S L+ + + + L A+ +S+ + HR ++H + N ++ VV LP D+ + C +A R + KS S R + LY+DL GPMRV S+ G Y+++IVD++SR+ F++ K +
Sbjct: 359 HMTCNLKLLTNFVEKFLGTV-KFGNDQIAPILGYGDLV------QGTITIERVYY----VKGLNHNLFSVGQFCDADLEVAFQKSTCFIRGLKRNDLLTG-SRGSDLFSITLQNTTSPNLICLMAKATSSHARL-WHRRLSHLNFDTINLLSKNDIVVGLPKLKFDKHHLCSSCELGKAKRKSFHTKSTLSSKRRLQLLYMDLCGPMRVESINGKKYVLVIVDDYSRYTWTHFLRSKDE 584
BLAST of mRNA_H-paniculata_contig35098.9343.1 vs. uniprot
Match: H3H7N0_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7N0_PHYRM) HSP 1 Score: 67.0 bits (162), Expect = 4.240e-9 Identity = 60/251 (23.90%), Postives = 108/251 (43.03%), Query Frame = 1
Query: 31 WNSDTGATDHMTSDETAFEDYTPALPGTMCEIANGKFVPVEGWRRLVLLVSQPRGKITGSNVKQGCPRTRELGRNLISTRRVTDTSGKSSIYSANKARLG-LGKESLLFNVSASSGLYVVEAVRSAAGTAKALTARKSSNRDVMDMHRLVAHASAQITNYTAETAGVV---LPDEWG---VYKGCSTAEAHRFAMPKKSDKRSTRAAERLYVDLGGPMRVTSLGGSSYLIIIVDEHSRFQAIRFIKKKSDA 762
W D+GAT H+ +D+ F D G + +A+G + G +V V P G +K + +NL+S ++ + ++ + R+ + ++ + GLY ++ AA A ++ +D+H + HA ++ ++ + P + V +GC + + P DKR E L+ D+ GPM SLGGS YL++IVDE S ++ KS++
Sbjct: 181 WAVDSGATHHICNDKAKFADLIERNEGEL-SVADGNKAAIMGVGTIVERVVLPNGDERDIEIKNALY-VPSMSKNLLSVPQINKSGLFQVVFDGTQMRVAHKASKQVVAAANLVDGLYWLQTPHRAANAA--------TSGKTVDLHARMGHAPVEVLRKMVDSDMIKDAKAPSKSSGPSVCRGCQQGKMVQKPFPSNHDKRRYDTFELLHFDICGPMEEESLGGSKYLLLIVDEASGCMKGFCLRAKSES 421
BLAST of mRNA_H-paniculata_contig35098.9343.1 vs. uniprot
Match: A0A699VIP2_TANCI (Gag-Pol polyprotein (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699VIP2_TANCI) HSP 1 Score: 62.0 bits (149), Expect = 4.380e-9 Identity = 26/68 (38.24%), Postives = 44/68 (64.71%), Query Frame = 1
Query: 559 GCSTAEAHRFAMPKKSDKRSTRAAERLYVDLGGPMRVTSLGGSSYLIIIVDEHSRFQAIRFIKKKSDA 762
GC ++ R + P KS S + L++DL GPMR+TS+ G Y+++IVD++SR+ + F++ K +A
Sbjct: 2 GCEQGKSKRASHPPKSVPNSRKRLHLLHMDLCGPMRITSINGKRYILVIVDDYSRYTWVHFLRSKDEA 69
BLAST of mRNA_H-paniculata_contig35098.9343.1 vs. uniprot
Match: H3HA19_PHYRM (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HA19_PHYRM) HSP 1 Score: 66.6 bits (161), Expect = 5.460e-9 Identity = 59/251 (23.51%), Postives = 108/251 (43.03%), Query Frame = 1
Query: 31 WNSDTGATDHMTSDETAFEDYTPALPGTMCEIANGKFVPVEGWRRLVLLVSQPRGKITGSNVKQGCPRTRELGRNLISTRRVTDTSGKSSIYSANKARLG-LGKESLLFNVSASSGLYVVEAVRSAAGTAKALTARKSSNRDVMDMHRLVAHASAQITNYTAETAGVV---LPDEWG---VYKGCSTAEAHRFAMPKKSDKRSTRAAERLYVDLGGPMRVTSLGGSSYLIIIVDEHSRFQAIRFIKKKSDA 762
W D+GAT H+ +D+ F G + +A+G + G +V V P G +K + +NL+S ++ + ++ + R+ + ++ + GLY ++ + +A A ++ +D+H + HA ++ + + P + VY+GC + + P DKR E L+ D+ GPM SLGGS YL++IVDE S ++ KS++
Sbjct: 88 WAVDSGATHHICNDKAKFAHLIERNEGEL-SVADGNKAAIMGVGTIVERVVLPNGDERDIEIKNALY-VPSMSKNLLSVPQINKSGLFQVVFDGTQMRVAHKASKQVVAAANLVDGLYWLQTPQRSANAA--------TSGKTVDLHARMGHAPVEVLRKMVDNDMIKDAKAPSKSSGPSVYRGCQQGKMVQKPFPSNRDKRRYDTFELLHFDICGPMEEESLGGSKYLLLIVDEASGCMKGFCLRAKSES 328
BLAST of mRNA_H-paniculata_contig35098.9343.1 vs. uniprot
Match: A0A2N9II60_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9II60_FAGSY) HSP 1 Score: 67.0 bits (162), Expect = 5.880e-9 Identity = 64/259 (24.71%), Postives = 117/259 (45.17%), Query Frame = 1
Query: 1 NLAVTREKERWNSDTGATDHMTSDETAFEDYTPALPGTMCEIANGKFVPVEGWRRLVLLVSQPRGKITGSNVKQGCPRTRELGRNLISTRRVTDTSGKSSIYSANKARL-GLGKESLLFNVSASSGLYVVEAVR-SAAGTAKALTARKSSNRDVMDMHRLVAHASAQITNYTAETAGVVLPDEWGVY----KGCSTAEAHRFAMPKKSDKRSTRAAERLYVDLGGPMRVTSLGGSSYLIIIVDEHSRFQAIRFIKKKSD 759
NL T+ E W +DTGA+DH+TS+ + TP + NG+ +P++ L + ++ SNV PR + NLIS ++ + S + A K + L LL+ + G+Y + + + ++ + K+ SS H + H SA++ + + ++ K C + H+ P ++K T+ + ++ DL GP SL G + +++VDE ++F + +K KSD
Sbjct: 347 NLQYTQGSETWLTDTGASDHITSNASNLSSPTPYQGSEQVTVGNGQHLPIQSIGNTHLHTQYHKFQL--SNVLH-IPR---IASNLISVHKLCLENNCSCHFDAKKLLIQDLPTGRLLYKGLSKDGVYPIHSSQFCSSASPKSAYLTSSSALKWQLWHSRLGHPSAKVLHSIFPSLSPCNTLDFNSVSNHCKHCLAGKMHQLPFPVSTNK-VTKPFQLVHADLWGPAPSVSLNGFRFYLVLVDEFTKFTWVYLLKHKSD 598 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig35098.9343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig35098.9343.1 >prot_H-paniculata_contig35098.9343.1 ID=prot_H-paniculata_contig35098.9343.1|Name=mRNA_H-paniculata_contig35098.9343.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=254bp NLAVTREKERWNSDTGATDHMTSDETAFEDYTPALPGTMCEIANGKFVPVback to top mRNA from alignment at H-paniculata_contig35098:156..917- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig35098.9343.1 ID=mRNA_H-paniculata_contig35098.9343.1|Name=mRNA_H-paniculata_contig35098.9343.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=762bp|location=Sequence derived from alignment at H-paniculata_contig35098:156..917- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig35098:156..917- >mRNA_H-paniculata_contig35098.9343.1 ID=mRNA_H-paniculata_contig35098.9343.1|Name=mRNA_H-paniculata_contig35098.9343.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1524bp|location=Sequence derived from alignment at H-paniculata_contig35098:156..917- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |