mRNA_H-paniculata_contig35092.9341.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig35092.9341.1
Unique NamemRNA_H-paniculata_contig35092.9341.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig35092.9341.1 vs. uniprot
Match: D7FH76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH76_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 5.200e-10
Identity = 35/50 (70.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    1 QSAALHHALLLEERGLQLEQAEVLLRRKTDEEARLRREIDRLTAASMADR 150
            Q+ AL HALLLEERGLQLE+AE LLRRK +EE  L+RE++RL  AS+ADR
Sbjct:  320 QNTALRHALLLEERGLQLERAEALLRRKEEEEGLLKRELNRLGEASVADR 369
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BLAST of mRNA_H-paniculata_contig35092.9341.1 vs. uniprot
Match: A0A6H5K6B9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6B9_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 3.340e-9
Identity = 34/50 (68.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 QSAALHHALLLEERGLQLEQAEVLLRRKTDEEARLRREIDRLTAASMADR 150
            Q+ AL HA LLEERGLQLE+AE LLRRK +EE  L+RE+ RL  AS+ADR
Sbjct:  296 QNTALRHAFLLEERGLQLERAEALLRRKEEEEGLLKRELHRLGEASVADR 345
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig35092.9341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FH76_ECTSI5.200e-1070.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K6B9_9PHAE3.340e-968.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig35092contigH-paniculata_contig35092:1710..1868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size159
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930083.4183946-CDS-H-paniculata_contig35092:1709..18681622930083.4183946-CDS-H-paniculata_contig35092:1709..1868Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35092 1710..1868 +
1691481139.7642488-CDS-H-paniculata_contig35092:1709..18681691481139.7642488-CDS-H-paniculata_contig35092:1709..1868Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35092 1710..1868 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig35092.9341.1prot_H-paniculata_contig35092.9341.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig35092 1710..1868 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig35092.9341.1

>prot_H-paniculata_contig35092.9341.1 ID=prot_H-paniculata_contig35092.9341.1|Name=mRNA_H-paniculata_contig35092.9341.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp
QSAALHHALLLEERGLQLEQAEVLLRRKTDEEARLRREIDRLTAASMADR
VS*
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mRNA from alignment at H-paniculata_contig35092:1710..1868+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig35092.9341.1 ID=mRNA_H-paniculata_contig35092.9341.1|Name=mRNA_H-paniculata_contig35092.9341.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at H-paniculata_contig35092:1710..1868+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAGCGCCGCTTTGCATCACGCGCTGCTGCTGGAGGAAAGGGGTTTGCA
GCTAGAGCAGGCGGAGGTGCTTCTTCGGCGGAAGACGGATGAGGAGGCGA
GGCTGCGTAGGGAGATTGACCGCCTTACTGCCGCATCGATGGCCGACAGG
GTGAGTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig35092:1710..1868+

>mRNA_H-paniculata_contig35092.9341.1 ID=mRNA_H-paniculata_contig35092.9341.1|Name=mRNA_H-paniculata_contig35092.9341.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig35092:1710..1868+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAGCGCCGCTTTGCATCACGCGCTGCTGCTGGAGGAAAGGGGTTTGCA
GCTAGAGCAGGCGGAGGTGCTTCTTCGGCGGAAGACGGATGAGGAGGCGA
GGCTGCGTAGGGAGATTGACCGCCTTACTGCCGCATCGATGGCCGACAGG
GTGAGTTGACAGAGCGCCGCTTTGCATCACGCGCTGCTGCTGGAGGAAAG
GGGTTTGCAGCTAGAGCAGGCGGAGGTGCTTCTTCGGCGGAAGACGGATG
AGGAGGCGAGGCTGCGTAGGGAGATTGACCGCCTTACTGCCGCATCGATG
GCCGACAGGGTGAGTTGA
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