mRNA_H-paniculata_contig3509.9340.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3509.9340.1
Unique NamemRNA_H-paniculata_contig3509.9340.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig3509.9340.1 vs. uniprot
Match: D7G869_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G869_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 3.240e-19
Identity = 43/84 (51.19%), Postives = 48/84 (57.14%), Query Frame = 1
Query:   34 ALHEACANGHRDTAEKLLNLGVDMHKGTHLGGDTAIHLAVSSGERPLVFLLLRSGCDPNLPNKFGATCFHYAGTSPAIAKLLLR 285
            A+HEACANGHRD  E+LL  G D  K T LGGD                       DPN+PNK+ AT FHYAG+ P IAKLLLR
Sbjct:   48 AVHEACANGHRDALEQLLKRGADTQKTTFLGGDXXXXXXXXXXXXXXXXXXXXXXXDPNVPNKYSATSFHYAGSKPTIAKLLLR 131          
BLAST of mRNA_H-paniculata_contig3509.9340.1 vs. uniprot
Match: A0A7S2PDT2_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PDT2_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.680e-13
Identity = 37/81 (45.68%), Postives = 49/81 (60.49%), Query Frame = 1
Query:   37 LHEACANGHRDTAEKLLN-LGVDMHKGTHLGGDTAIHLAVSSGERPLVFLLLRSGCDPNLPNKFGATCFHYAGTSPAIAKL 276
            LHEA A G+    + L+     D+H+ T+LGGDT +HLAVSS  +  V LLLR G DPN+ N++  T  HYA +     KL
Sbjct:   40 LHEAAAYGNDSLIDSLVTEFAADLHQKTYLGGDTPLHLAVSSDSKSTVSLLLRYGADPNVQNRYMCTPLHYACSKDVALKL 120          
BLAST of mRNA_H-paniculata_contig3509.9340.1 vs. uniprot
Match: UPI000C71AFCA (ankyrin-1-like n=1 Tax=Trichogramma pretiosum TaxID=7493 RepID=UPI000C71AFCA)

HSP 1 Score: 64.7 bits (156), Expect = 4.650e-10
Identity = 31/70 (44.29%), Postives = 46/70 (65.71%), Query Frame = 1
Query:   37 LHEACANGHRDTAEKLLNLGVDMHKGTHLGGDTAIHLAVSSGERPLVFLLLRSGCDPNLPNKFGATCFHY 246
            LH AC     D  +KL+++G D++   H+ G++ +HLA+  G + LV LLLRSG +PN PNK G+T  H+
Sbjct:  169 LHVACEFNCVDVVKKLIDIGYDVNCFEHVRGNSPLHLALMYGHKNLVDLLLRSGANPNSPNKEGSTPLHF 238          
BLAST of mRNA_H-paniculata_contig3509.9340.1 vs. uniprot
Match: UPI000C718A97 (uncharacterized protein LOC106659740 n=1 Tax=Trichogramma pretiosum TaxID=7493 RepID=UPI000C718A97)

HSP 1 Score: 57.4 bits (137), Expect = 1.670e-7
Identity = 31/69 (44.93%), Postives = 40/69 (57.97%), Query Frame = 1
Query:   40 HEACANGHRDTAEKLLNLG-VDMHKGTHLGGDTAIHLAVSSGERPLVFLLLRSGCDPNLPNKFGATCFH 243
            H AC  G  D  +K L +G VD +      GD  +HLA+ +    +V LLLRSG DPNL N+FG+T  H
Sbjct:  155 HVACKYGLEDAVKKFLEVGQVDPNLLVPKTGDYPLHLALKNVNTTVVGLLLRSGADPNLANRFGSTALH 223          
BLAST of mRNA_H-paniculata_contig3509.9340.1 vs. uniprot
Match: A0A6H5I6P4_9HYME (Non-specific serine/threonine protein kinase n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5I6P4_9HYME)

HSP 1 Score: 53.1 bits (126), Expect = 5.540e-6
Identity = 26/68 (38.24%), Postives = 38/68 (55.88%), Query Frame = 1
Query:   40 HEACANGHRDTAEKLLNLGVDMHKGTHLGGDTAIHLAVSSGERPLVFLLLRSGCDPNLPNKFGATCFH 243
            H AC  G +D  EK L  G+D +       D  +HLA++ G + +  LLL +G D NL N++G+T  H
Sbjct: 2863 HAACIAGCKDVVEKFLEFGLDPNYFPQESIDPPLHLALTWGRKEVTRLLLETGADLNLVNRYGSTPLH 2930          
BLAST of mRNA_H-paniculata_contig3509.9340.1 vs. uniprot
Match: A0A6H5I8K1_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5I8K1_9HYME)

HSP 1 Score: 50.8 bits (120), Expect = 3.570e-5
Identity = 30/68 (44.12%), Postives = 36/68 (52.94%), Query Frame = 1
Query:   40 HEACANGHRDTAEKLLNLGVDMHKGTHLGGDTAIHLAVSSGERPLVFLLLRSGCDPNLPNKFGATCFH 243
            H AC  G    A K L LG D +      GD+ + LAVSSG + L+ LLLR G + NL N  G T  H
Sbjct:  170 HIACMCGDVSIAGKFLELGQDPNTICRETGDSPLILAVSSGSKNLIELLLRKGANANLANNDGMTPLH 237          
BLAST of mRNA_H-paniculata_contig3509.9340.1 vs. uniprot
Match: UPI000DBCDA9F (ankyrin n=1 Tax=Aspergillus brunneoviolaceus CBS 621.78 TaxID=1450534 RepID=UPI000DBCDA9F)

HSP 1 Score: 50.4 bits (119), Expect = 4.640e-5
Identity = 32/77 (41.56%), Postives = 44/77 (57.14%), Query Frame = 1
Query:   22 GSTQALHEACANGHRDTAEKLLNLGVDMHKGTHLGGDTAIHLAVSSGERPLVFLLLRSGCDP-NLPNKFGATCFHYA 249
            GS   LH ACA+ H +TA +L+ LG ++   T    DTA+ LAV +G   LV +LL +G  P N   + G T  H+A
Sbjct:  488 GSQSPLHHACAHNHPNTALELIKLGANVSHVTPKR-DTALFLAVGTGNLELVRVLLDNGAPPVNARTQSGQTPLHHA 563          
BLAST of mRNA_H-paniculata_contig3509.9340.1 vs. uniprot
Match: A0A2V5JA38_9EURO (NACHT domain-containing protein (Fragment) n=1 Tax=Aspergillus indologenus CBS 114.80 TaxID=1450541 RepID=A0A2V5JA38_9EURO)

HSP 1 Score: 50.1 bits (118), Expect = 6.290e-5
Identity = 31/72 (43.06%), Postives = 41/72 (56.94%), Query Frame = 1
Query:   37 LHEACANGHRDTAEKLLNLGVDMHKGTHLGGDTAIHLAVSSGERPLVFLLLRSGCDP-NLPNKFGATCFHYA 249
            LH ACA  H DTA +L+ LG ++   T    DTA+ LAV +G   LV +LL +G  P N   + G T  H+A
Sbjct:  506 LHHACARNHPDTALELIKLGANVSHVTPKR-DTALFLAVGTGNLELVTVLLDNGAPPVNARTQSGQTPLHHA 576          
BLAST of mRNA_H-paniculata_contig3509.9340.1 vs. uniprot
Match: A0A6H5IQ23_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5IQ23_9HYME)

HSP 1 Score: 49.7 bits (117), Expect = 8.930e-5
Identity = 28/70 (40.00%), Postives = 36/70 (51.43%), Query Frame = 1
Query:   34 ALHEACANGHRDTAEKLLNLGVDMHKGTHLGGDTAIHLAVSSGERPLVFLLLRSGCDPNLPNKFGATCFH 243
            A+H  C N      EK L LG D +      GDT +HLA+      +  LLL+SG +PNL NK+  T  H
Sbjct:  437 AVHFGCGN----VVEKFLELGQDPNIIWQKSGDTPLHLALRHTRMEVFELLLKSGANPNLANKYDTTPLH 502          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3509.9340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G869_ECTSI3.240e-1951.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2PDT2_9STRA2.680e-1345.68Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
UPI000C71AFCA4.650e-1044.29ankyrin-1-like n=1 Tax=Trichogramma pretiosum TaxI... [more]
UPI000C718A971.670e-744.93uncharacterized protein LOC106659740 n=1 Tax=Trich... [more]
A0A6H5I6P4_9HYME5.540e-638.24Non-specific serine/threonine protein kinase n=1 T... [more]
A0A6H5I8K1_9HYME3.570e-544.12Uncharacterized protein n=1 Tax=Trichogramma brass... [more]
UPI000DBCDA9F4.640e-541.56ankyrin n=1 Tax=Aspergillus brunneoviolaceus CBS 6... [more]
A0A2V5JA38_9EURO6.290e-543.06NACHT domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5IQ23_9HYME8.930e-540.00Uncharacterized protein n=1 Tax=Trichogramma brass... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3509contigH-paniculata_contig3509:11362..11649 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.6
Seed ortholog evalue1.7e-15
Seed eggNOG ortholog2880.D7G869
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-12_001280.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size288
Cds size288
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930083.3564353-CDS-H-paniculata_contig3509:11361..116491622930083.3564353-CDS-H-paniculata_contig3509:11361..11649Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3509 11362..11649 +
1691481139.752941-CDS-H-paniculata_contig3509:11361..116491691481139.752941-CDS-H-paniculata_contig3509:11361..11649Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3509 11362..11649 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3509.9340.1prot_H-paniculata_contig3509.9340.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3509 11362..11649 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3509.9340.1

>prot_H-paniculata_contig3509.9340.1 ID=prot_H-paniculata_contig3509.9340.1|Name=mRNA_H-paniculata_contig3509.9340.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp
VTSTSSSGSTQALHEACANGHRDTAEKLLNLGVDMHKGTHLGGDTAIHLA
VSSGERPLVFLLLRSGCDPNLPNKFGATCFHYAGTSPAIAKLLLR*
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mRNA from alignment at H-paniculata_contig3509:11362..11649+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3509.9340.1 ID=mRNA_H-paniculata_contig3509.9340.1|Name=mRNA_H-paniculata_contig3509.9340.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=288bp|location=Sequence derived from alignment at H-paniculata_contig3509:11362..11649+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCACCAGCACGTCGTCCTCGGGCTCTACGCAGGCGCTTCACGAAGCATG CGCGAACGGCCATCGGGATACGGCCGAGAAACTTCTAAATCTTGGGGTGG ACATGCACAAAGGAACACATCTCGGCGGAGACACTGCAATTCACTTGGCG GTCAGTTCCGGGGAGCGACCGTTAGTTTTCCTACTTCTGCGATCTGGGTG CGACCCAAACCTACCGAACAAATTCGGCGCAACGTGCTTTCACTACGCGG GTACAAGTCCAGCTATTGCCAAGCTTCTCCTTAGGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig3509:11362..11649+

>mRNA_H-paniculata_contig3509.9340.1 ID=mRNA_H-paniculata_contig3509.9340.1|Name=mRNA_H-paniculata_contig3509.9340.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at H-paniculata_contig3509:11362..11649+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCACCAGCACGTCGTCCTCGGGCTCTACGCAGGCGCTTCACGAAGCATG
CGCGAACGGCCATCGGGATACGGCCGAGAAACTTCTAAATCTTGGGGTGG
ACATGCACAAAGGAACACATCTCGGCGGAGACACTGCAATTCACTTGGCG
GTCAGTTCCGGGGAGCGACCGTTAGTTTTCCTACTTCTGCGATCTGGGTG
CGACCCAAACCTACCGAACAAATTCGGCGCAACGTGCTTTCACTACGCGG
GTACAAGTCCAGCTATTGCCAAGCTTCTCCTTAGGTAGGTCACCAGCACG
TCGTCCTCGGGCTCTACGCAGGCGCTTCACGAAGCATGCGCGAACGGCCA
TCGGGATACGGCCGAGAAACTTCTAAATCTTGGGGTGGACATGCACAAAG
GAACACATCTCGGCGGAGACACTGCAATTCACTTGGCGGTCAGTTCCGGG
GAGCGACCGTTAGTTTTCCTACTTCTGCGATCTGGGTGCGACCCAAACCT
ACCGAACAAATTCGGCGCAACGTGCTTTCACTACGCGGGTACAAGTCCAG
CTATTGCCAAGCTTCTCCTTAGGTAG
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