mRNA_H-paniculata_contig3509.9339.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3509.9339.1 vs. uniprot
Match: D7G868_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G868_ECTSI) HSP 1 Score: 412 bits (1059), Expect = 1.370e-123 Identity = 309/845 (36.57%), Postives = 428/845 (50.65%), Query Frame = 1
Query: 1351 RKEEGAETVD--LHKWATLVIQSRYARAWLAKAAIGAKRVEVALTSQASRLADRLAVARGGSVNGNVSELLRQVDADYQRYERVIREMKTREDEMATTFITKVLDRRDVDIAGAWKSFTSAAVKHGTALKRWRYARLPHPAPSANREPDRFDEAKTWEL-----KYLDPAVARTLPSTFLRSTVPAHAMLCWRLHPTAIVQKRKKQQRVSNPISKHTAKEAVHTRMAAIKNAEMAARSDYRHLLSQSGSESSESRKRVMEEAHRGLAAVSSTTRPLESSQKALASNGTGNKARTKERYSTTSTSAISSSASSSLGAAENMSPQSFDSPTNFYVGPSQPKSRGSERAIDVSGGETNERVDNESHGF-----------GTWKTVWDAKRVNRGLPGKACARFPGSSARQDLPSGLDETVERLCAASFLRGYVPEGLMPAGTTAEEAYQRYLELPPSLAKIRHEQLCREASKPIAGVLRNHGFAVARHLLPISKLQDLLGEAGADKGVILGAITLARELKALSSAG-----TGDDEYPP-----------SSLNPFREHRSPPGTAHE-LRQCRKSESAGNRRVYGIHKGVEKLDSSLEGKAGGPLLRGNSLRKKGPTTIDL--VEVGSDRVGAKDVESDSRWDPRRYTSRPEEWFRPLETLVKRRWDNEVKALVAINSYTFDDLYRKFYR--------SRLPDN-----TEKGADDHM---DKRVNLLESERDACIP-----SSRQFGVAICDGADEQCKPPTTRPNALSQRVQDIVEEKYGTFFNGMTPTAVELYKYMIDNVASWGLVDDPIGTFLCQAAFYIVEHPSPRTKAELNAVAGCDLRGK 3711
R+E GA D K + + AR WLA+ A+ ++V+V LTS+ S+L D LA + ++S + Q+D DY++Y+R+I EM+ REDEMA TF+ KVL+RR DI GAW F AA ++ ++ AR HP P++ + E +L +Y PA A+ LPS +LR+ +P H L R V+K Q VS ++ + V+T + + N E+ AR D + + +S K A +++ + S + + G + A + ER T+A + +G + + +V Q +R + R G+ E V +S G W++VWDA+R RGL G A +RFPGS RQD+PSGL ETVERLCAA+FLRG+VP GLMP GTT EEAY+RYLELPPSLAKIRHEQLC EAS+P+A LR G+ V LLP+SKL+ L +AG+ L A+++A E+K G +GDD + P S P RSP E L C ES R G S +KKG I + +E+ S G + + + RWDP RYTSRPEEW RP +++K+RWD+ KA V +N+YTFD LYR+ + R DN T G DD+ KR + E P SS + A C ++RV+ I++E+YGTFF+GMT +A ELY++MI++ SWG VDD IG L +AAF+IVEHPSP T+AEL DL K
Sbjct: 16 RRESGALCFDGVSRKSGQISSIDKQARVWLARRAVHLQKVKVGLTSRVSKLTDMLA---SSDDSRSISTVFGQIDRDYRKYDRIIAEMQAREDEMAVTFVEKVLERRAADIGGAWTRFVGAATEYSAGRRKRSDARRAHPYPASGDKRAAASEIHDEKLMRLMERYEIPAHAKALPSAYLRAALPMHLKL--RSERLVSVEKGHTQNVVSIDGTQRQKRRRVNTLLPS-SNEEVGARQDGGGVFMPAVQCNSLDEKMSSISPATAAATITTAAGAINSPSRFSSFEGKRSGAHSCERR----TAAGGYDGAGGIGCRGSDGGGASGDEDFGFVERHQTLTRQTSRHA----GDGAENVGLDSAGSQRWEGGGGVSTSGWESVWDAEREKRGLTGDAGSRFPGSLVRQDMPSGLAETVERLCAAAFLRGHVPHGLMPKGTTPEEAYRRYLELPPSLAKIRHEQLCTEASQPVASALRARGYTVLEQLLPLSKLEHLFSQAGSGASETLAAVSIASEIKPKRGVGGCGNGSGDDLFSPLSPFSRRCLARSRAAPISTQRSPRSRRREGLDDCVSDESV---RKDGSRGSGRVTSRSXXXXXXXXXXXSGEAKKKGLLRISMQGLELPSRAAGME--QGNGRWDPSRYTSRPEEWIRPPPSVIKQRWDDSAKAFVPVNNYTFDGLYRRHHPLDHCCDEDHRHVDNERDMVTRGGGDDNWCSEGKRDGAMGQEEHPSRPGGLYRSSPTAADPLSGAAGGSC---------FAKRVESIMQEEYGTFFDGMTQSATELYQHMINDSGSWGSVDDSIGILLRRAAFFIVEHPSPATRAELAVARERDLVAK 832
BLAST of mRNA_H-paniculata_contig3509.9339.1 vs. uniprot
Match: A0A836CBX2_9STRA (C2H2-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBX2_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 3.980e-17 Identity = 53/111 (47.75%), Postives = 71/111 (63.96%), Query Frame = 1
Query: 2515 QDLPSGLDETVERLCAASFLRGYVPEGLMPAGTTAEEAYQRYLELPPSLAKIRHEQLCREASKPIAGVLRNHGFAVARHLLPISKLQDLLGEAGADKGVILGAITLARELK 2847
+D+P GL + RL A+ LR +VP MPAGT+AE A++ YL LPPSLAKI+HEQ +A++P A L GF + HL+PISK+ ++ E G IL A LA EL+
Sbjct: 1332 RDIPGGLHDCTGRLLRAALLRSFVPS-TMPAGTSAEIAFRHYLALPPSLAKIKHEQDAAKAARPHAAALSAAGFHLIGHLMPISKMARVMQELGVPAAAILAAQDLAEELR 1441 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3509.9339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3509.9339.1 >prot_H-paniculata_contig3509.9339.1 ID=prot_H-paniculata_contig3509.9339.1|Name=mRNA_H-paniculata_contig3509.9339.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1237bp RKSTLARLREAGEKREYIQQELDIATEKMALCARRAEAAHLALREWSIAKback to top mRNA from alignment at H-paniculata_contig3509:407..9315- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3509.9339.1 ID=mRNA_H-paniculata_contig3509.9339.1|Name=mRNA_H-paniculata_contig3509.9339.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8909bp|location=Sequence derived from alignment at H-paniculata_contig3509:407..9315- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3509:407..9315- >mRNA_H-paniculata_contig3509.9339.1 ID=mRNA_H-paniculata_contig3509.9339.1|Name=mRNA_H-paniculata_contig3509.9339.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=7422bp|location=Sequence derived from alignment at H-paniculata_contig3509:407..9315- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |