mRNA_H-paniculata_contig3507.9337.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3507.9337.1
Unique NamemRNA_H-paniculata_contig3507.9337.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3507.9337.1 vs. uniprot
Match: D7FRQ4_ECTSI (Protein YIPF n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ4_ECTSI)

HSP 1 Score: 337 bits (863), Expect = 8.600e-112
Identity = 192/296 (64.86%), Postives = 208/296 (70.27%), Query Frame = 3 
Query:  120 MEDEWYSGQGTSADIGGGHGGDGGAMGVGGRASAAGRYGPSFTPPNSHGTPGMMPGQP-FGVGGAHMG------------------------YGGGMPGGGAVDGGRGLGGVMGPSGPPGEEEDYENEPPLLEELGINFEHIWSKTLAVILPTKRIDINYLDDTDLAGPLVYCLCFGFCLLLNKKPHFGYIYGFGMFGCLATFMVLNLIGEKPIDLWKTTSVLGYCLLPVIGLAAVGIVQGLQGTVGHVLGGVAVVWCTIAATRLFEEYLDMRRQRYLVAYPVGLLYACFVLITVY 932
            MEDEWYSG    AD   G G                 YG SFTPP+S G  G+M GQ  +G  GA MG                         GGG+           +G ++       +EEDYENEPPLLEELGINFEHIWSKTLAVILPTK+IDINYLDDTDLAGPLV+CLCFG CLLL  KPHFGYIYGFGMFGC+AT MVLNLIGEKPIDLWKTTSVLGYCLLPVIGLAA+GIV  L+G +GHVLG VAV WCTI+ATRLFEEYL+MRRQRYLVAYPVGLLYACFVLITVY
Sbjct:   73 MEDEWYSG----ADTTDGTGXXXXXXXXXXXXQQRTPYGDSFTPPSSQG--GIMAGQQAYGAPGASMGGXXXXXXXXXXXXXXXXXXXXXXXVGGGV-----------VGAIL------EDEEDYENEPPLLEELGINFEHIWSKTLAVILPTKKIDINYLDDTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFGMFGCIATAMVLNLIGEKPIDLWKTTSVLGYCLLPVIGLAAMGIVTDLRGNLGHVLGFVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 345
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BLAST of mRNA_H-paniculata_contig3507.9337.1 vs. uniprot
Match: A0A6H5JG11_9PHAE (Protein YIPF n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG11_9PHAE)

HSP 1 Score: 335 bits (859), Expect = 3.710e-111
Identity = 192/297 (64.65%), Postives = 208/297 (70.03%), Query Frame = 3 
Query:  117 IMEDEWYSGQGTSADIGGGHGGDGGAMGVGGRASAAGRYGPSFTPPNSHGTPGMMPGQP-FGVGGAHMG------------------------YGGGMPGGGAVDGGRGLGGVMGPSGPPGEEEDYENEPPLLEELGINFEHIWSKTLAVILPTKRIDINYLDDTDLAGPLVYCLCFGFCLLLNKKPHFGYIYGFGMFGCLATFMVLNLIGEKPIDLWKTTSVLGYCLLPVIGLAAVGIVQGLQGTVGHVLGGVAVVWCTIAATRLFEEYLDMRRQRYLVAYPVGLLYACFVLITVY 932
            IMEDEWYSG    AD   G G                 YG SFTPP+S G  G+M GQ  +G  GA MG                         G G+           +G ++       +EEDYENEPPLLEELGINFEHIWSKTLAVILPTK+IDINYLDDTDLAGPLV+CLCFG CLLL  KPHFGYIYGFGMFGC+AT MVLNLIGEKPIDLWKTTSVLGYCLLPVIGLAA+GIV  L+G +GHVLG VAV WCTI+ATRLFEEYL+MRRQRYLVAYPVGLLYACFVLITVY
Sbjct:   74 IMEDEWYSG----ADTTDGTGXXXXXXXXXXXXXXXTTYGDSFTPPSSQG--GIMAGQQAYGAPGASMGGXXXXXXXXXXXXXXXXXXXXXXXVGVGV-----------VGAIL------EDEEDYENEPPLLEELGINFEHIWSKTLAVILPTKKIDINYLDDTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFGMFGCIATAMVLNLIGEKPIDLWKTTSVLGYCLLPVIGLAAMGIVTDLRGNLGHVLGFVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 347
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BLAST of mRNA_H-paniculata_contig3507.9337.1 vs. uniprot
Match: A0A835Z6H4_9STRA (Protein YIPF n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6H4_9STRA)

HSP 1 Score: 251 bits (641), Expect = 6.650e-80
Identity = 117/172 (68.02%), Postives = 141/172 (81.98%), Query Frame = 3 
Query:  417 YENEPPLLEELGINFEHIWSKTLAVILPTKRIDINYLDDTDLAGPLVYCLCFGFCLLLNKKPHFGYIYGFGMFGCLATFMVLNLIGEKPIDLWKTTSVLGYCLLPVIGLAAVGIVQGLQGTVGHVLGGVAVVWCTIAATRLFEEYLDMRRQRYLVAYPVGLLYACFVLITVY 932
            ++NEPPLLEELGINFEHIW+KT AV++PT+RI+  YLD+TDLAGPLV+ L FG CLLL  K HFGYIYGFG FGC A  +VLNL+G++PID W+TTSVLGYCLLPV+ L+AVGI   L G VG  L G AV W   AAT+LFE+YLDMR QR+L+AYP+GLLY CFVL+ ++
Sbjct:   54 FDNEPPLLEELGINFEHIWAKTRAVLVPTRRIESAYLDETDLAGPLVFALVFGTCLLLAGKLHFGYIYGFGAFGCGALSLVLNLMGDRPIDAWRTTSVLGYCLLPVVLLSAVGIALDLSGRVGLALAGAAVAWSCTAATKLFEQYLDMRHQRWLIAYPIGLLYCCFVLMAIF 225
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BLAST of mRNA_H-paniculata_contig3507.9337.1 vs. uniprot
Match: A0A7S0DM30_9EUKA (Protein YIPF n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DM30_9EUKA)

HSP 1 Score: 231 bits (589), Expect = 1.060e-72
Identity = 105/177 (59.32%), Postives = 134/177 (75.71%), Query Frame = 3 
Query:  402 GEEEDYENEPPLLEELGINFEHIWSKTLAVILPTKRIDINYLDDTDLAGPLVYCLCFGFCLLLNKKPHFGYIYGFGMFGCLATFMVLNLIGEKPIDLWKTTSVLGYCLLPVIGLAAVGIVQGLQGTVGHVLGGVAVVWCTIAATRLFEEYLDMRRQRYLVAYPVGLLYACFVLITVY 932
            G E D+ NEPPLLEELGINF+HIW KTLAV++P K +    + D D+AGPL +CL  GFCLLL  K HFGYIYGFG+ GCL  +++LNL+ ++ ID+++T S+LGYCLLP++ LAA  IV  L+G +G     V ++WCT+AATR  E  LDMR QRYLVAYP+ LLY+CF LITV+
Sbjct:    3 GSELDFSNEPPLLEELGINFDHIWQKTLAVLVPVKELKQEIMVDADMAGPLFFCLLLGFCLLLTGKVHFGYIYGFGLIGCLGMYIILNLMSDRSIDIYRTASILGYCLLPIVSLAAASIVFNLKGYIGFSTTTVTILWCTVAATRFVEATLDMRPQRYLVAYPLMLLYSCFALITVF 179
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BLAST of mRNA_H-paniculata_contig3507.9337.1 vs. uniprot
Match: A0A8K1CDX0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CDX0_PYTOL)

HSP 1 Score: 227 bits (579), Expect = 1.410e-70
Identity = 108/180 (60.00%), Postives = 140/180 (77.78%), Query Frame = 3 
Query:  402 GEEEDYENEPPLLEELGINFEHIWSKTLAVILPTKRIDINYLDDTDLAGPLVYCLCFGFCLLLNKKPHFGYIYGFGMFGCLATFMVLNLIG-EKPIDLWKTTSVLGYCLLPVIGLAAVGIVQGLQ--GTVGHVLGGVAVVWCTIAATRLFEEYLDMRRQRYLVAYPVGLLYACFVLITVY 932
            G++E+YENEPPLLEELGINF+HIW KT +V+LPTK+I+ + LDD DLAGPLVYC  FG CLLL  K HFGYIYGFG+  C+  ++++NL+  ++ ID+++  SVLGYCLLP+IGLAA+ I   +Q  G  G  L  VA++W T  A+R FE+ L M  Q+YL+AYPVGL+YACFVLITV+
Sbjct:   43 GDDEEYENEPPLLEELGINFDHIWLKTQSVLLPTKQINEHILDDADLAGPLVYCFVFGMCLLLAAKVHFGYIYGFGVLSCVFMYLLMNLLSPDRAIDIYRVCSVLGYCLLPIIGLAAINIFVSVQKLGLAGFALATVAILWSTHTASRFFEKALYMSEQKYLIAYPVGLVYACFVLITVF 222
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BLAST of mRNA_H-paniculata_contig3507.9337.1 vs. uniprot
Match: A0A7S2TR42_9EUKA (Protein YIPF n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TR42_9EUKA)

HSP 1 Score: 224 bits (570), Expect = 9.320e-70
Identity = 107/175 (61.14%), Postives = 133/175 (76.00%), Query Frame = 3 
Query:  414 DYENEPPLLEELGINFEHIWSKTLAVILPTKRIDINYLDDTDLAGPLVYCLCFGFCLLLNKKPHFGYIYGFGMFGCLATFMVLNLIGE--KPIDLWKTTSVLGYCLLPVIGLAAVGIVQGLQGTVGHVLGGVAVVWCTIAATRLFEEYLDMRRQRYLVAYPVGLLYACFVLITVY 932
            DY+NEPPLLEELGINF+HI  KTLAV++PTK  D   + D D+AGPLV+CL  GFCL+L  K HFGYIYGFG+ GCL  + +LNL+ +  K ID+++T S+LGYCLLP++GLAA+  V  L+G +G  L    V+WCTIAATR  E  L MR QRYLVAYP+ LLY+CF LITV+
Sbjct:   10 DYDNEPPLLEELGINFDHIMQKTLAVLIPTKTPDHEIMIDADMAGPLVFCLLLGFCLMLRLKMHFGYIYGFGLIGCLGMYTILNLMSDPDKSIDIFRTISILGYCLLPIVGLAALSTVLSLKGYLGFGLTAFTVLWCTIAATRFVEATLGMRDQRYLVAYPLMLLYSCFALITVF 184
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BLAST of mRNA_H-paniculata_contig3507.9337.1 vs. uniprot
Match: A0A2D4BQN0_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BQN0_PYTIN)

HSP 1 Score: 222 bits (566), Expect = 3.600e-68
Identity = 105/179 (58.66%), Postives = 138/179 (77.09%), Query Frame = 3 
Query:  405 EEEDYENEPPLLEELGINFEHIWSKTLAVILPTKRIDINYLDDTDLAGPLVYCLCFGFCLLLNKKPHFGYIYGFGMFGCLATFMVLNLIG-EKPIDLWKTTSVLGYCLLPVIGLAAVGIVQGLQ--GTVGHVLGGVAVVWCTIAATRLFEEYLDMRRQRYLVAYPVGLLYACFVLITVY 932
            ++EDY NEPPLLEELGINFEHIW+KT +V+LPTK+I+ + LDD DLAGPLVYC  FGFCLLL  K HFGYIYGFG+  CL  ++++ L+  E+ ID+++  SVLGYCLLP+I LAAV I   ++  G +G  +  + ++W T  A+R FE+ L M  Q+YL+AYPVGL+Y+CFVLITV+
Sbjct:   76 DDEDYXNEPPLLEELGINFEHIWTKTQSVLLPTKQINEHILDDADLAGPLVYCFVFGFCLLLAAKVHFGYIYGFGVLSCLFMYLLMXLLSPERSIDIYRVCSVLGYCLLPIIALAAVNIFISVKDLGLIGFAMASLCILWSTHTASRFFEKALYMSEQKYLIAYPVGLVYSCFVLITVF 254
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BLAST of mRNA_H-paniculata_contig3507.9337.1 vs. uniprot
Match: K3WQV6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQV6_GLOUD)

HSP 1 Score: 221 bits (562), Expect = 1.270e-67
Identity = 108/192 (56.25%), Postives = 143/192 (74.48%), Query Frame = 3 
Query:  366 GLGGVMGPSGPPGEEEDYENEPPLLEELGINFEHIWSKTLAVILPTKRIDINYLDDTDLAGPLVYCLCFGFCLLLNKKPHFGYIYGFGMFGCLATFMVLNLIG-EKPIDLWKTTSVLGYCLLPVIGLAAVGIVQGLQ--GTVGHVLGGVAVVWCTIAATRLFEEYLDMRRQRYLVAYPVGLLYACFVLITVY 932
            G+ G +G S    ++EDY NEPPLLEELGINFEHIW KT +V+LP K+I+ + LDD DLAGPLV+C  FG CLLL  K HFGYIYGFG+  CL  ++++NL+  E+ ID+++  SVLGYCLLP+IGLAA+ IV  ++  G VG  L  + ++W T  A+R FE+ L M  Q+YL+AYP+ L+Y+CFVLITV+
Sbjct:   59 GISGTVGSSYADPDDEDYSNEPPLLEELGINFEHIWLKTQSVLLPMKQINEHILDDADLAGPLVFCFLFGMCLLLAAKVHFGYIYGFGVISCLFMYLLMNLLSPERTIDIYRVCSVLGYCLLPIIGLAAINIVVSVKDLGLVGFGLASLCILWSTHTASRFFEKALYMTEQKYLIAYPIVLVYSCFVLITVF 250
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BLAST of mRNA_H-paniculata_contig3507.9337.1 vs. uniprot
Match: A0A1V9YZW9_9STRA (Protein YIPF n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YZW9_9STRA)

HSP 1 Score: 221 bits (563), Expect = 9.960e-67
Identity = 107/180 (59.44%), Postives = 140/180 (77.78%), Query Frame = 3 
Query:  402 GEEEDYENEPPLLEELGINFEHIWSKTLAVILPTKRIDINYLDDTDLAGPLVYCLCFGFCLLLNKKPHFGYIYGFGMFGCLATFMVLNLIGE-KPIDLWKTTSVLGYCLLPVIGLAAVGIVQGLQGT--VGHVLGGVAVVWCTIAATRLFEEYLDMRRQRYLVAYPVGLLYACFVLITVY 932
            G EEDY+NEPPLLEELG+NF HIW+KTL+V+LPTK+I+ N LDDTDLAGPLV+C  FG CLLL+ K HFGYIYGFG+FG    + ++NL+   + ID+++  SVLGYCLLP+I LAA+ IV  ++G   VG +L  ++V+W T  ATR FE+ L M  QR+L+AYP  ++Y+CFVLITV+
Sbjct:  150 GGEEDYDNEPPLLEELGVNFNHIWTKTLSVLLPTKQINENILDDTDLAGPLVFCFIFGTCLLLSGKIHFGYIYGFGLFGWAFMWAIMNLLSPTRTIDVYRVCSVLGYCLLPIILLAAINIVISIKGLNYVGFLLAMLSVIWSTHTATRFFEKALHMSDQRFLIAYPTAMVYSCFVLITVF 329
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BLAST of mRNA_H-paniculata_contig3507.9337.1 vs. uniprot
Match: A0A5D6XGY6_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XGY6_9STRA)

HSP 1 Score: 217 bits (553), Expect = 1.800e-66
Identity = 104/179 (58.10%), Postives = 136/179 (75.98%), Query Frame = 3 
Query:  405 EEEDYENEPPLLEELGINFEHIWSKTLAVILPTKRIDINYLDDTDLAGPLVYCLCFGFCLLLNKKPHFGYIYGFGMFGCLATFMVLNLIG-EKPIDLWKTTSVLGYCLLPVIGLAAVGIVQGLQ--GTVGHVLGGVAVVWCTIAATRLFEEYLDMRRQRYLVAYPVGLLYACFVLITVY 932
            ++EDY NEPPLLEELGINFEHIW KT +V+LPTK+I+ + LDD DLAGPLV+C  FG CLLL  K HFGYIYGFG+  CL  ++++NL+  E+ ID+++  SVLGYCLLP++ LAAV IV  +   G  G  L  +A++W +  A+R FE+ L M  Q+YLVAYP+ L+Y+CFVLITV+
Sbjct:   57 DDEDYANEPPLLEELGINFEHIWLKTQSVLLPTKQINEHILDDADLAGPLVFCFLFGVCLLLAAKVHFGYIYGFGVLSCLFMYLLMNLLSPERTIDIYRVCSVLGYCLLPIVALAAVNIVVSVHNLGLAGFALASLAILWSSHTASRFFEKALYMTEQKYLVAYPIVLVYSCFVLITVF 235
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3507.9337.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRQ4_ECTSI8.600e-11264.86Protein YIPF n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5JG11_9PHAE3.710e-11164.65Protein YIPF n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A835Z6H4_9STRA6.650e-8068.02Protein YIPF n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A7S0DM30_9EUKA1.060e-7259.32Protein YIPF n=1 Tax=Amorphochlora amoebiformis Ta... [more]
A0A8K1CDX0_PYTOL1.410e-7060.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2TR42_9EUKA9.320e-7061.14Protein YIPF n=1 Tax=Lotharella oceanica TaxID=641... [more]
A0A2D4BQN0_PYTIN3.600e-6858.66Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
K3WQV6_GLOUD1.270e-6756.25Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A1V9YZW9_9STRA9.960e-6759.44Protein YIPF n=1 Tax=Thraustotheca clavata TaxID=7... [more]
A0A5D6XGY6_9STRA1.800e-6658.10Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3507contigH-paniculata_contig3507:10819..16792 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score337.4
Seed ortholog evalue6.1e-90
Seed eggNOG ortholog2880.D7FRQ4
Preferred nameYIPF4
KEGG koko:K20363
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005886,GO:0012505,GO:0016020,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0071944
EggNOG free text desc.vesicle-mediated transport
EggNOG OGsCOG5080@1,KOG3103@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_003430.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons5
Model size959
Cds size816
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930082.8640494-UTR-H-paniculata_contig3507:10818..109371622930082.8640494-UTR-H-paniculata_contig3507:10818..10937Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3507 10819..10937 +
1691481139.463433-UTR-H-paniculata_contig3507:10818..109371691481139.463433-UTR-H-paniculata_contig3507:10818..10937Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3507 10819..10937 +
1622930082.948141-UTR-H-paniculata_contig3507:16768..167921622930082.948141-UTR-H-paniculata_contig3507:16768..16792Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3507 16769..16792 +
1691481139.5241005-UTR-H-paniculata_contig3507:16768..167921691481139.5241005-UTR-H-paniculata_contig3507:16768..16792Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3507 16769..16792 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930082.8785496-CDS-H-paniculata_contig3507:10937..111081622930082.8785496-CDS-H-paniculata_contig3507:10937..11108Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3507 10938..11108 +
1691481139.4767427-CDS-H-paniculata_contig3507:10937..111081691481139.4767427-CDS-H-paniculata_contig3507:10937..11108Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3507 10938..11108 +
1622930082.8906493-CDS-H-paniculata_contig3507:12554..127911622930082.8906493-CDS-H-paniculata_contig3507:12554..12791Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3507 12555..12791 +
1691481139.48569-CDS-H-paniculata_contig3507:12554..127911691481139.48569-CDS-H-paniculata_contig3507:12554..12791Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3507 12555..12791 +
1622930082.9028227-CDS-H-paniculata_contig3507:14414..144861622930082.9028227-CDS-H-paniculata_contig3507:14414..14486Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3507 14415..14486 +
1691481139.4935434-CDS-H-paniculata_contig3507:14414..144861691481139.4935434-CDS-H-paniculata_contig3507:14414..14486Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3507 14415..14486 +
1622930082.9167125-CDS-H-paniculata_contig3507:15929..160361622930082.9167125-CDS-H-paniculata_contig3507:15929..16036Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3507 15930..16036 +
1691481139.5025635-CDS-H-paniculata_contig3507:15929..160361691481139.5025635-CDS-H-paniculata_contig3507:15929..16036Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3507 15930..16036 +
1622930082.9331071-CDS-H-paniculata_contig3507:16539..167681622930082.9331071-CDS-H-paniculata_contig3507:16539..16768Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3507 16540..16768 +
1691481139.5119293-CDS-H-paniculata_contig3507:16539..167681691481139.5119293-CDS-H-paniculata_contig3507:16539..16768Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3507 16540..16768 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3507.9337.1prot_H-paniculata_contig3507.9337.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3507 10938..16768 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3507.9337.1

>prot_H-paniculata_contig3507.9337.1 ID=prot_H-paniculata_contig3507.9337.1|Name=mRNA_H-paniculata_contig3507.9337.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=272bp
MEDEWYSGQGTSADIGGGHGGDGGAMGVGGRASAAGRYGPSFTPPNSHGT
PGMMPGQPFGVGGAHMGYGGGMPGGGAVDGGRGLGGVMGPSGPPGEEEDY
ENEPPLLEELGINFEHIWSKTLAVILPTKRIDINYLDDTDLAGPLVYCLC
FGFCLLLNKKPHFGYIYGFGMFGCLATFMVLNLIGEKPIDLWKTTSVLGY
CLLPVIGLAAVGIVQGLQGTVGHVLGGVAVVWCTIAATRLFEEYLDMRRQ
RYLVAYPVGLLYACFVLITVY*
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mRNA from alignment at H-paniculata_contig3507:10819..16792+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3507.9337.1 ID=mRNA_H-paniculata_contig3507.9337.1|Name=mRNA_H-paniculata_contig3507.9337.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5974bp|location=Sequence derived from alignment at H-paniculata_contig3507:10819..16792+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTAAACTGAATCACTTTTTTACCATAATTCAAATATATGTAATATTTCG
TTACACTATTTCCCTCCCGTGCCTGAGAAATACGGACACGAGGACTATCC
CTTGCCGAGCATCGCAATCATGGAAGATGAATGGTATTCGGGACAAGGGA
CAAGTGCTGATATTGGTGGAGGTCACGGTGGCGATGGAGGAGCAATGGGG
GTTGGTGGCCGGGCGTCAGCAGCCGGAAGGTACGGACCATCGTTCACCCC
GCCCAACTCCCACGGAACACCAGGGATGATGCCTGGACAGGTATGTACAG
CAGTTCTTTAGTTGGGATTGCGTGATGCCGGTGGCTTTTTCGGGGTTGCC
TATAACTCTTGACGTGGTAGGTTAGTTACAGAAGGCTGAATTGTCTATTT
AATTTGACTACTACTAACTGTAGTGTGGTTTGCCGCATGTGATCTACATA
AAAGATTTAAGTATATGCAGTATATCCTGTCCTCTACTGTAGTGTACTTT
ACTGCAGGCCGCTGGTTGCTGCCCAAGTAACGCTTTCTCGTGTAAGCACA
GACTGAATGTTGAATACAGTACTGTGCATCATGTGTAGGTCCTGGTCCCG
CAGTCACGAGTTTTTACCACTGTTTTGATATAGTACCTACACGCCAATGT
GATTTCAGTCCTTGAGTGCCGGAGACCGCTTCGGAACAAAAAAATGACAA
TACTCGTGAATGTCCAGACATCGAATGCGGGCGGCTCCCTATCCTTGTAA
TTGTGTCATTAGATAGACTTTGTTTTCCCCGTTTCTGGGGTGATTGGGGA
TTAGGTGGAGACCGGCGCCCAAACGGTTAGAGCTGTAAGATGTCATCGAA
TGTCTGTTTGCCAATTTGGCGTCGGGTGCCACCACCATTGCACACCATCG
CCTTAAAGCAACATGTGGTACAACCTGTATTTTGTGACCACAAGTGTGGT
ATAACGGGTCGTGTCTCGAGCAAGATCCTGTGTCATGTGCTCTTTATTGA
GTATCCTTGAACATCGAAACCTTACCTTCTGCGTTCTCCGTAGATGAGAA
GCTTGTTTTCGGGGACAGGGCATCCAAAATATGTCCACCGTACTGAATGC
TTATCGGTTTTTCGGTGGTACTGTGACCGTTCCTCAGAAATTTCTGCAGT
CGATAAAAAATACTGATGAATGGTATGGTGCGTTACCCTCATGTGGCTTG
GGACGCACAGCTTCGTCATATTGACGGTGTGTGCTTCGTTGTAGTTTCGT
GTTTGCGTCAAACGTATTGTGTATACCGGAAGGTGTTGAATTGAGTAGTG
TATAGAGGTTCTGCCCGCGTGGTATGTACATGGTGTGGGTTTGAAAACAT
GTATGGAGTTGAATTACGAAGACTTCGTTTTCTCTCCTGGCGGGGTATAC
TTCAGTTTGTGCGGGGTTTGTATGGTATAAATGGCGTCACAGCTGTGTTT
TCCGAGGCCAGCAAGCTATTTCCGGTATGCGTTGGGAGTGTTTTTGTCTA
TGGATACTTTGTCGATGGATGCATGTTCTCTCAAATGCCCACACGACACG
TGTGACCGACCCCTTCCAACCATCACATTCATGTGGAGTCTCAAAATATG
ACTTGCGGCTCGCGCTACTTGCCGCAGGCACTCTTTAGCCCCGAAACGAA
ACGCCCGAAGCCAACCGCAAACAAACTCGCTGCACAACCCTCCCGCCCTG
TACGGACTATAATTTTTTGTTGCTCGGCGCACTCAGCCATTTGGGGTTGG
TGGCGCGCATATGGGCTACGGGGGCGGGATGCCTGGCGGAGGGGCTGTGG
ATGGGGGAAGGGGACTGGGGGGTGTTATGGGGCCTAGCGGGCCCCCAGGG
GAGGAGGAAGATTACGAGAACGAGCCACCTCTGTTGGAAGAGCTGGGAAT
AAATTTCGAGCACATCTGGTCGAAGACATTGGCCGTCATCCTACCTACGA
AGCGTATTGACATCAATTATTTAGTGAGTGGTGGTTTTATGCCGTATTTT
TGGTGCTTTTGTGCTGATGATGCCGCATTGTCGTTTTTGTTGTTGCCACT
TTACCGTACTGCTATACGCCGCAGGGAGCACGACATCGCTGGTGCATATT
CCAGCATGACGTCCCTTCCGTCCACTTACCGTGGTGTAAAAAGGATATAA
CACCCCCTCCCCCCATCGGTAACGTTTCACGTCCCGGAAAAATACGAATA
CTTGCACATGGTTTTCACAAGAAACTGAAAGTAGCCGCCTGAGTTTCAGA
ATGCTGCTCGTGTATTTTATGTATCTGGGACCATCCACGACTGCTAATAA
CACTCGTAAATCAGACGGGTAGGGGTGGGAATTTTTATCTATGTGTTCGC
TCATTCTGAAATTGAGGCGAATACTTGTAGTTTTTAGTGAAAACCATTTG
CAAGTGTTTTGTATTTGTTCGTGGGGTATAACGTCTTGAGCTGCGAGTGA
GGAAGGTCTAGACGTATGTTGAAGACTGCGTGAAGGAATACCTAGATGCA
TCATTCAACGCAGACATGAAGTTGGAAGTCCAATTTAGAAGGGGGAGTGT
TGACCTCAAGCAACAATGATTCAGGGTTGTAGACGAGGACGACGACGGGA
TGTTTAACTGTGACTCTGGATGTGTGTGCAAGGACAGAATTCACATGGTG
GGACCCCTACATACAAAGAGAGAGAGAGAGAGAGAGAGAGATGTATACGA
AAAAATGGGAAAATTGAAGGATGCGATAGAGAGGCATTTGAATCCTAGGA
TTGCGAAAAGAAGGCGACAGCGGTTCTGGTAGATTATCTAATAAACACAA
AATTAGCCTGCAAAGGCGAGTTGAGGTAGATGGGGTGGAACAATTTTGAG
TTACATATGACAGCGTAGGAAAGAGCGATTGGCCATAGGAAGTTGCTCTA
GTAGGAACAAAGCTCCGTCCTCTCGAGGACGTATTGTCTACGGTTTAACA
ACTAGGGCATGTAAAACATGAGTATGCCCCCCCCCCCCCTCCACCCGGGT
AGACTCATTCATAATTCAACGCACTTGCCACAGTTAGTAAAACTATAGGT
CTAACGTTCGTATAATAAGTACCTTCTACTCATGTTTAGGGTATGCAGCT
GATTTCAAATTTCACTTGTGCACCCTTATCAGCAAAAACGCATCAATAAG
TGCAGGCGGGGGTGGGGTACTTCGGAATGGCTGTTTGGCGTGTAAGCTGC
AGTACTCTACACGTTGACACCTGCATCTAGCCTTTTCTTCATCGTGGCTC
AGGTCTCTATCGGAACCCCCGGCCCGGAGCTGGGAGTGTTATGCTCCGTT
CCTTGCCTTGTATTATCGCGCGGTGGGAGCAGCAGTCCCATTCGCTCGTC
AACGTTGGAGTTGACAGGCGGGGTATATATACTCTGACGAGTATCTCCCC
CTTCCGCCGGTATTTTTTGCCGCATACTACACATTATCCGGAATTCGAAC
GCGCAAGCTACCGATTGGATGGGTCTTGAAAGTACATCGTTTTGACCACG
AGGCGCGCGGTCACAAGCATGTGCGTTTGCGTCTGAACACCGCTGTCCTC
CCTATCCCGGCATACGCCACCCCGTCATGACCTGTTGCATTCTCAGGACG
ACACAGACCTTGCGGGTCCGCTGGTGTACTGCCTCTGCTTCGGTTTCTGT
CTGCTGTTGAATAAAAAGGTGAGGGAATAGTTTCACGCCCCGGACAATTA
TGAATATTTTCATAAAAACGAAAGTATTCGCCTGAGTTTCAGAATGAGTG
AACACATAGATAAAAATACCTACTCCTGTTCATTCGATTTACGAGTATTT
TTGACAGTTGTGAATGGTCTGGGACACTTAGAGTTCACGAGCTCATTCTG
AAACTCAGGCGAGTACTGTCAGTTTTTTTGTGAAAACCGTTCGCAATTAC
TCGTAATTGTGTGGGGGGGTGACTATTTTTCAAATGCTTTAATTAAGTAA
TAAACTACGATATGCGACTTCGCACACGGACATGCGCCCGAACGGATAGG
GTAGCTCGTGAACTGAGTATGACTGGAAGTCTAGTCAGAGGTCTTTTAGT
GGGTGCAACCTCCACACTGCCTACCTGGTTGGGTCGAACCGGGGTGGCGC
CTACCCCGCAGAGGAATAAATAACTCTGTTCTGTTAAAGGAAAATGTAGA
CATACTTTGGTAGAAATACTCAGGTATGGAAGCATCGGTAAAGGTTTTTG
CGTCAGCCTTCCGGGGGTTTAAAAAACAAACAAGCGAGACTTCGCACCCC
TGTAAAACAACCGCTAGGACCCACGCAACAATTTGGATCGTGTTCTAGTT
GGATAATCCTGTATTTCTTAAGCCGTTTGTTTGCATGAATGTGTGTGTGT
GTGTGTGTGTGTGTTTCTGTCGCCATTTTACTATGGATAAGAACCTCGAC
TACTAGAACGGTGAGTCCTCTTCTCGTGCAGGGATTCTTGTATTTTGAAC
GCCACGTTGCTTGGATCGTGATCACCGCCAGGGTTTATCCACACGTATGT
TTTGGATGTACAGAAGGTGCTTGCCCTGGACACATAGGAAACACCGTCAA
CCCCGCGTCTAAGACTCGAAACAAAATTCCCAGGTGTCGGTTGATGATAT
GATGGGCCTGAGCCCCAGAAGTCGACATGTTTGGCTTGCTTTTGGTTTCG
GTTTTTGGTCTTTTGACACGGTGAATGCAGTACAGCTATGCAATATATAT
CCCCGTAAACCCTACCCTATATCTCTGCTGTGTCTCACCCATCCATCCTT
ACACCGCAGTTTTCGCTAGACACACACTGCTAAAATAATGGAGCTTGTAT
CCCCAAATTTTGTTCCTTGTCAAGGGACTGACAAAGTAATGTAACATGAG
CGAAGCAGAATTGGCGGGGGGGGGGGGGGGGGGGTATTCGCGTCTCGCGT
GACCGACCGTGAACCGGGTGACCACGGGAACAAAATCACCCGACCTGAGC
AGGATGTACCATAAAAACAAAAGATAGCAAGGCCAAACAAGACATAGGGT
ACCAAGCGGTCATGTGAAATGTCTTGCCTTTGTGTATCTATGTCGGTTCG
CCCACGCCCCGCCCTTTTGTAATCTTGGCGTTGGCGGCGTGATGATTATG
GATCATGACAGCCGCACTTCGGCTACATCTACGGGTTCGGCATGTTTGGC
TGCTTGGCGACATTCATGGTGCTGAACCTCATCGGAGAAAAGCCGATCGA
CTTGTGGAAAACAACGAGGTTTGTGTTATCACGCTCTTGTGTGTTGTACC
TACCAGTTATATATATATACACGTCGCCTCGAACCTTTTTCTACTTTGCT
GGCCCTCACACTTTTTTTTTTTTTTTCCTTTGACGTCTTTTCTAACAGTA
GAGCTTGTGCCTGCATGCTTTGTTATTGAAAAATATGACCATGCAGTCTC
GAAGCCTACTTAACACCTTTCCCCTATTATGATTGGATTTTGCTTTTGAG
GATGATGTGTTGTAGCCATGATTGCGGGCTAGATTGAATACCCTTCAGCG
AAATATAAACAAGTAGTAGTGTCTTAACGTGTCATTTAAAGTATGTATTT
GTGTTGGAAATATCACCTTTGGTGGGAAATTATCAAATGCATTTGCTGTT
CTTGTACTCGAGGGTTGGGGGCGATAATGTTCGCATTGTTCTCTTGGGGG
GTTTAAAATTGCTGACCGTTATACTACACCCCCCTCCATCCATCTCCCCA
ACCTGGGTACGCGCCAAACAGCGTCCTTGGATATTGCCTTCTGCCCGTGA
TCGGCCTGGCGGCTGTCGGCATAGTTCAGGGTCTACAGGGAACGGTGGGA
CACGTGCTGGGAGGGGTTGCGGTAGTCTGGTGCACCATAGCGGCCACGCG
GCTGTTCGAGGAGTATCTAGACATGCGACGACAACGGTATTTGGTGGCGT
ATCCGGTGGGACTGCTCTACGCGTGCTTTGTTCTCATCACGGTGTACTAA
AAGGGGAGAGCATTTCGAAGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig3507:10819..16792+

>mRNA_H-paniculata_contig3507.9337.1 ID=mRNA_H-paniculata_contig3507.9337.1|Name=mRNA_H-paniculata_contig3507.9337.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1632bp|location=Sequence derived from alignment at H-paniculata_contig3507:10819..16792+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAGATGAATGGTATTCGGGACAAGGGACAAGTGCTGATATTGGTGG
AGGTCACGGTGGCGATGGAGGAGCAATGGGGGTTGGTGGCCGGGCGTCAG
CAGCCGGAAGGTACGGACCATCGTTCACCCCGCCCAACTCCCACGGAACA
CCAGGGATGATGCCTGGACAGATGGAAGATGAATGGTATTCGGGACAAGG
GACAAGTGCTGATATTGGTGGAGGTCACGGTGGCGATGGAGGAGCAATGG
GGGTTGGTGGCCGGGCGTCAGCAGCCGGAAGGTACGGACCATCGTTCACC
CCGCCCAACTCCCACGGAACACCAGGGATGATGCCTGGACAGCCATTTGG
GGTTGGTGGCGCGCATATGGGCTACGGGGGCGGGATGCCTGGCGGAGGGG
CTGTGGATGGGGGAAGGGGACTGGGGGGTGTTATGGGGCCTAGCGGGCCC
CCAGGGGAGGAGGAAGATTACGAGAACGAGCCACCTCTGTTGGAAGAGCT
GGGAATAAATTTCGAGCACATCTGGTCGAAGACATTGGCCGTCATCCTAC
CTACGAAGCGTATTGACATCAATTATTTACCATTTGGGGTTGGTGGCGCG
CATATGGGCTACGGGGGCGGGATGCCTGGCGGAGGGGCTGTGGATGGGGG
AAGGGGACTGGGGGGTGTTATGGGGCCTAGCGGGCCCCCAGGGGAGGAGG
AAGATTACGAGAACGAGCCACCTCTGTTGGAAGAGCTGGGAATAAATTTC
GAGCACATCTGGTCGAAGACATTGGCCGTCATCCTACCTACGAAGCGTAT
TGACATCAATTATTTAGACGACACAGACCTTGCGGGTCCGCTGGTGTACT
GCCTCTGCTTCGGTTTCTGTCTGCTGTTGAATAAAAAGGACGACACAGAC
CTTGCGGGTCCGCTGGTGTACTGCCTCTGCTTCGGTTTCTGTCTGCTGTT
GAATAAAAAGCCGCACTTCGGCTACATCTACGGGTTCGGCATGTTTGGCT
GCTTGGCGACATTCATGGTGCTGAACCTCATCGGAGAAAAGCCGATCGAC
TTGTGGAAAACAACGAGCCGCACTTCGGCTACATCTACGGGTTCGGCATG
TTTGGCTGCTTGGCGACATTCATGGTGCTGAACCTCATCGGAGAAAAGCC
GATCGACTTGTGGAAAACAACGAGCGTCCTTGGATATTGCCTTCTGCCCG
TGATCGGCCTGGCGGCTGTCGGCATAGTTCAGGGTCTACAGGGAACGGTG
GGACACGTGCTGGGAGGGGTTGCGGTAGTCTGGTGCACCATAGCGGCCAC
GCGGCTGTTCGAGGAGTATCTAGACATGCGACGACAACGGTATTTGGTGG
CGTATCCGGTGGGACTGCTCTACGCGTGCTTTGTTCTCATCACGGTGTAC
TAACGTCCTTGGATATTGCCTTCTGCCCGTGATCGGCCTGGCGGCTGTCG
GCATAGTTCAGGGTCTACAGGGAACGGTGGGACACGTGCTGGGAGGGGTT
GCGGTAGTCTGGTGCACCATAGCGGCCACGCGGCTGTTCGAGGAGTATCT
AGACATGCGACGACAACGGTATTTGGTGGCGTATCCGGTGGGACTGCTCT
ACGCGTGCTTTGTTCTCATCACGGTGTACTAA
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