mRNA_H-paniculata_contig34899.9299.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34899.9299.1
Unique NamemRNA_H-paniculata_contig34899.9299.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig34899.9299.1 vs. uniprot
Match: A0A6H5L4Y4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y4_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 9.130e-23
Identity = 45/104 (43.27%), Postives = 68/104 (65.38%), Query Frame = 1 
Query:    1 LIALDCTNAFNSVKRAVILEEVAIRTSGLTPCVAKCYGKKPPDIIFQMNTGERRTMSSKTGIHQGDGLGPTLFCMPVGSILRKCREQFEVLGVELLAYLDDLVL 312
            ++  DC+NAFN+ KR  I+ + A     L   +A+CY + P   I+ M++GERRT+  K+G+ QGDG+GP LFC  +  I+ K R +++ LGV L AY+DD+ L
Sbjct:  139 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVSLKAYMDDISL 242
[Close]
BLAST of mRNA_H-paniculata_contig34899.9299.1 vs. uniprot
Match: A0A6H5LL14_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL14_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 4.340e-22
Identity = 44/103 (42.72%), Postives = 68/103 (66.02%), Query Frame = 1 
Query:    1 LIALDCTNAFNSVKRAVILEEVAIRTSGLTPCVAKCYGKKPPDIIFQMNTGERRTMSSKTGIHQGDGLGPTLFCMPVGSILRKCREQFEVLGVELLAYLDDLV 309
            ++  DC+NAFN+ KR  I+ + A     L   +A+CY + P   I+ M++GERRT+  K+G+ QGDG+GP LFC  +  I+ K R +++ LGV L AY+DD++
Sbjct:  138 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFTLVPIVLKLRAKYDNLGVRLKAYMDDII 240
[Close]
BLAST of mRNA_H-paniculata_contig34899.9299.1 vs. uniprot
Match: A0A6H5KJC0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJC0_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.530e-21
Identity = 45/104 (43.27%), Postives = 68/104 (65.38%), Query Frame = 1 
Query:    1 LIALDCTNAFNSVKRAVILEEVAIRTSGLTPCVAKCYGKKPPDIIFQMNTGERRTMSSKTGIHQGDGLGPTLFCMPVGSILRKCREQFEVLGVELLAYLDDLVL 312
            ++  DC+NAFN+ KR  I+ + A     L   +A+CY + P   I+ M++GERRT+  K+G+ QGDG+GP LFC  +  I+ K R +++ LGV L AY+DD+ L
Sbjct:  533 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVSLKAYMDDISL 636
[Close]
BLAST of mRNA_H-paniculata_contig34899.9299.1 vs. uniprot
Match: A0A6H5JLG6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLG6_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.550e-21
Identity = 45/104 (43.27%), Postives = 68/104 (65.38%), Query Frame = 1 
Query:    1 LIALDCTNAFNSVKRAVILEEVAIRTSGLTPCVAKCYGKKPPDIIFQMNTGERRTMSSKTGIHQGDGLGPTLFCMPVGSILRKCREQFEVLGVELLAYLDDLVL 312
            ++  DC+NAFN+ KR  I+ + A     L   +A+CY + P   I+ M++GERRT+  K+G+ QGDG+GP LFC  +  I+ K R +++ LGV L AY+DD+ L
Sbjct:  146 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVSKVRAKYDHLGVSLKAYVDDISL 249
[Close]
BLAST of mRNA_H-paniculata_contig34899.9299.1 vs. uniprot
Match: A0A6H5KYJ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYJ9_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 5.270e-21
Identity = 45/104 (43.27%), Postives = 68/104 (65.38%), Query Frame = 1 
Query:    1 LIALDCTNAFNSVKRAVILEEVAIRTSGLTPCVAKCYGKKPPDIIFQMNTGERRTMSSKTGIHQGDGLGPTLFCMPVGSILRKCREQFEVLGVELLAYLDDLVL 312
            ++  DC+NAFN+ KR  I+ + A     L   +A+CY + P   I+ M++GERRT+  K+G+ QGDG+GP LFC  +  I+ K R +++ LGV L AY+DD+ L
Sbjct:   54 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISL 157
[Close]
BLAST of mRNA_H-paniculata_contig34899.9299.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 5.350e-21
Identity = 45/104 (43.27%), Postives = 68/104 (65.38%), Query Frame = 1 
Query:    1 LIALDCTNAFNSVKRAVILEEVAIRTSGLTPCVAKCYGKKPPDIIFQMNTGERRTMSSKTGIHQGDGLGPTLFCMPVGSILRKCREQFEVLGVELLAYLDDLVL 312
            ++  DC+NAFN+ KR  I+ + A     L   +A+CY + P   I+ M++GERRT+  K+G+ QGDG+GP LFC  +  I+ K R +++ LGV L AY+DD+ L
Sbjct:  528 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISL 631
[Close]
BLAST of mRNA_H-paniculata_contig34899.9299.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 5.440e-21
Identity = 45/104 (43.27%), Postives = 68/104 (65.38%), Query Frame = 1 
Query:    1 LIALDCTNAFNSVKRAVILEEVAIRTSGLTPCVAKCYGKKPPDIIFQMNTGERRTMSSKTGIHQGDGLGPTLFCMPVGSILRKCREQFEVLGVELLAYLDDLVL 312
            ++  DC+NAFN+ KR  I+ + A     L   +A+CY + P   I+ M++GERRT+  K+G+ QGDG+GP LFC  +  I+ K R +++ LGV L AY+DD+ L
Sbjct:  507 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISL 610
[Close]
BLAST of mRNA_H-paniculata_contig34899.9299.1 vs. uniprot
Match: A0A6H5KT19_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT19_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 6.290e-21
Identity = 44/104 (42.31%), Postives = 67/104 (64.42%), Query Frame = 1 
Query:    1 LIALDCTNAFNSVKRAVILEEVAIRTSGLTPCVAKCYGKKPPDIIFQMNTGERRTMSSKTGIHQGDGLGPTLFCMPVGSILRKCREQFEVLGVELLAYLDDLVL 312
            ++  DC+N  N+ KR  I+ + A     L  C+A+CY + P   I+ M++GERRT+  K+G+ QGDG+GP LFC  +  I+ K R +++ LGV L AY+DD+ L
Sbjct:  184 VVQTDCSNGLNTGKRTAIMAQAAKSVPDLVGCIARCY-ELPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVSLKAYMDDISL 286
[Close]
BLAST of mRNA_H-paniculata_contig34899.9299.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.350e-20
Identity = 44/104 (42.31%), Postives = 68/104 (65.38%), Query Frame = 1 
Query:    1 LIALDCTNAFNSVKRAVILEEVAIRTSGLTPCVAKCYGKKPPDIIFQMNTGERRTMSSKTGIHQGDGLGPTLFCMPVGSILRKCREQFEVLGVELLAYLDDLVL 312
            ++  DC+NAFN+ KR  I+ + +     L   +A+CY + P   I+ M++GERRT+  K+G+ QGDG+GP LFC  +  I+ K R +++ LGV L AY+DD+ L
Sbjct:  506 VVQTDCSNAFNTGKRTAIMAQASKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISL 609
[Close]
BLAST of mRNA_H-paniculata_contig34899.9299.1 vs. uniprot
Match: A0A6H5K0V7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V7_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 2.880e-20
Identity = 44/104 (42.31%), Postives = 68/104 (65.38%), Query Frame = 1 
Query:    1 LIALDCTNAFNSVKRAVILEEVAIRTSGLTPCVAKCYGKKPPDIIFQMNTGERRTMSSKTGIHQGDGLGPTLFCMPVGSILRKCREQFEVLGVELLAYLDDLVL 312
            ++  DC++AFN+ KR VI+ + A     +   +A+CY + P   I+ M++GERRT+  K+G+ QGDG+GP LFC  +  I+ K R  ++ LGV L AY+DD+ L
Sbjct:  131 VVQTDCSDAFNTGKRTVIMAQAAKSVPDVLGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAMYDHLGVCLKAYMDDISL 234
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34899.9299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4Y4_9PHAE9.130e-2343.27Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LL14_9PHAE4.340e-2242.72Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KJC0_9PHAE1.530e-2143.27Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JLG6_9PHAE1.550e-2143.27Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KYJ9_9PHAE5.270e-2143.27Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JI32_9PHAE5.350e-2143.27Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KMQ2_9PHAE5.440e-2143.27Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KT19_9PHAE6.290e-2142.31Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KKQ2_9PHAE1.350e-2042.31Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K0V7_9PHAE2.880e-2042.31Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34899contigH-paniculata_contig34899:1566..1880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score62.4
Seed ortholog evalue1.5e-07
Seed eggNOG ortholog400682.PAC_15701845
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs39QPF@33154,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size315
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930077.5131755-CDS-H-paniculata_contig34899:1565..18801622930077.5131755-CDS-H-paniculata_contig34899:1565..1880Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34899 1566..1880 +
1691481137.4578214-CDS-H-paniculata_contig34899:1565..18801691481137.4578214-CDS-H-paniculata_contig34899:1565..1880Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34899 1566..1880 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34899.9299.1prot_H-paniculata_contig34899.9299.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34899 1566..1880 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34899.9299.1

>prot_H-paniculata_contig34899.9299.1 ID=prot_H-paniculata_contig34899.9299.1|Name=mRNA_H-paniculata_contig34899.9299.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
LIALDCTNAFNSVKRAVILEEVAIRTSGLTPCVAKCYGKKPPDIIFQMNT
GERRTMSSKTGIHQGDGLGPTLFCMPVGSILRKCREQFEVLGVELLAYLD
DLVLA
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mRNA from alignment at H-paniculata_contig34899:1566..1880+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34899.9299.1 ID=mRNA_H-paniculata_contig34899.9299.1|Name=mRNA_H-paniculata_contig34899.9299.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=315bp|location=Sequence derived from alignment at H-paniculata_contig34899:1566..1880+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTATCGCCCTCGACTGTACCAATGCCTTCAACTCCGTCAAGCGGGCGGT
GATCTTGGAAGAAGTGGCAATCCGCACCTCGGGACTGACACCTTGCGTAG
CCAAATGCTATGGGAAAAAGCCGCCAGATATAATTTTCCAGATGAACACC
GGTGAACGCAGGACAATGTCCTCGAAAACGGGAATCCACCAGGGCGACGG
ACTGGGACCCACCCTCTTCTGCATGCCCGTGGGATCGATCTTGCGCAAGT
GCCGAGAACAATTCGAGGTTCTGGGGGTGGAGCTATTGGCCTACCTTGAC
GATCTGGTGCTGGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig34899:1566..1880+

>mRNA_H-paniculata_contig34899.9299.1 ID=mRNA_H-paniculata_contig34899.9299.1|Name=mRNA_H-paniculata_contig34899.9299.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig34899:1566..1880+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTATCGCCCTCGACTGTACCAATGCCTTCAACTCCGTCAAGCGGGCGGT
GATCTTGGAAGAAGTGGCAATCCGCACCTCGGGACTGACACCTTGCGTAG
CCAAATGCTATGGGAAAAAGCCGCCAGATATAATTTTCCAGATGAACACC
GGTGAACGCAGGACAATGTCCTCGAAAACGGGAATCCACCAGGGCGACGG
ACTGGGACCCACCCTCTTCTGCATGCCCGTGGGATCGATCTTGCGCAAGT
GCCGAGAACAATTCGAGGTTCTGGGGGTGGAGCTATTGGCCTACCTTGAC
GATCTGGTGCTGGCACTTATCGCCCTCGACTGTACCAATGCCTTCAACTC
CGTCAAGCGGGCGGTGATCTTGGAAGAAGTGGCAATCCGCACCTCGGGAC
TGACACCTTGCGTAGCCAAATGCTATGGGAAAAAGCCGCCAGATATAATT
TTCCAGATGAACACCGGTGAACGCAGGACAATGTCCTCGAAAACGGGAAT
CCACCAGGGCGACGGACTGGGACCCACCCTCTTCTGCATGCCCGTGGGAT
CGATCTTGCGCAAGTGCCGAGAACAATTCGAGGTTCTGGGGGTGGAGCTA
TTGGCCTACCTTGACGATCTGGTGCTGGCA
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