mRNA_H-paniculata_contig34878.9295.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34878.9295.1
Unique NamemRNA_H-paniculata_contig34878.9295.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34878.9295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34878contigH-paniculata_contig34878:1165..1604 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size442
Cds size432
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930077.2100585-UTR-H-paniculata_contig34878:1164..11721622930077.2100585-UTR-H-paniculata_contig34878:1164..1172Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34878 1165..1172 +
1691481137.3557022-UTR-H-paniculata_contig34878:1164..11721691481137.3557022-UTR-H-paniculata_contig34878:1164..1172Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34878 1165..1172 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930077.2299201-CDS-H-paniculata_contig34878:1172..16041622930077.2299201-CDS-H-paniculata_contig34878:1172..1604Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34878 1173..1604 +
1691481137.3659544-CDS-H-paniculata_contig34878:1172..16041691481137.3659544-CDS-H-paniculata_contig34878:1172..1604Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34878 1173..1604 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34878.9295.1prot_H-paniculata_contig34878.9295.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34878 1173..1604 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34878.9295.1

>prot_H-paniculata_contig34878.9295.1 ID=prot_H-paniculata_contig34878.9295.1|Name=mRNA_H-paniculata_contig34878.9295.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=144bp
MMNVLAKAGVGLIATSTSASTTGSVSVSSPEPRHSPEFNVTPPCSTIAGG
GRPFLRNPISPPRRPSSTVDRSRSVSNSPSSAAAAATCSRSASTGNITSA
VEKIGMTVDGDLATDVTTPMASTAHSRDSSLETTTTTTTTTSRL
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mRNA from alignment at H-paniculata_contig34878:1165..1604+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34878.9295.1 ID=mRNA_H-paniculata_contig34878.9295.1|Name=mRNA_H-paniculata_contig34878.9295.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=440bp|location=Sequence derived from alignment at H-paniculata_contig34878:1165..1604+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCTCAAGATGATGAATGTTCTTGCCAAGGCGGGCGTTGGCTTGATTGCC
ACCAGTACCTCCGCCAGCACCACCGGGAGCGTATCCGTTTCCTCTCCGGA
GCCCCGCCACTCTCCCGAATTCAACGTTACCCCACCCTGCTCCACGATCG
CCGGCGGCGGCCGACCGTTCTTGCGGAACCCGATTTCCCCACCCCGCCGC
CCATCATCCACCGTGGACCGGTCCCGGTCTGTGAGCAACTCTCCCTCTTC
TGCTGCCGCCGCGGCCACCTGTTCCCGGTCTGCTTCAACGGGTAACATTA
CGTCAGCTGTGGAGAAAATCGGCATGACGGTGGATGGAGACTTGGCCACG
GATGTGACCACACCCATGGCCAGCACCGCGCACTCCCGCGATAGTAGCTT
GGAAACCACCACCACGACCACCACGACCACCTCACGTTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig34878:1165..1604+

>mRNA_H-paniculata_contig34878.9295.1 ID=mRNA_H-paniculata_contig34878.9295.1|Name=mRNA_H-paniculata_contig34878.9295.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at H-paniculata_contig34878:1165..1604+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGAATGTTCTTGCCAAGGCGGGCGTTGGCTTGATTGCCACCAGTAC
CTCCGCCAGCACCACCGGGAGCGTATCCGTTTCCTCTCCGGAGCCCCGCC
ACTCTCCCGAATTCAACGTTACCCCACCCTGCTCCACGATCGCCGGCGGC
GGCCGACCGTTCTTGCGGAACCCGATTTCCCCACCCCGCCGCCCATCATC
CACCGTGGACCGGTCCCGGTCTGTGAGCAACTCTCCCTCTTCTGCTGCCG
CCGCGGCCACCTGTTCCCGGTCTGCTTCAACGGGTAACATTACGTCAGCT
GTGGAGAAAATCGGCATGACGGTGGATGGAGACTTGGCCACGGATGTGAC
CACACCCATGGCCAGCACCGCGCACTCCCGCGATAGTAGCTTGGAAACCA
CCACCACGACCACCACGACCACCTCACGTTTGATGATGAATGTTCTTGCC
AAGGCGGGCGTTGGCTTGATTGCCACCAGTACCTCCGCCAGCACCACCGG
GAGCGTATCCGTTTCCTCTCCGGAGCCCCGCCACTCTCCCGAATTCAACG
TTACCCCACCCTGCTCCACGATCGCCGGCGGCGGCCGACCGTTCTTGCGG
AACCCGATTTCCCCACCCCGCCGCCCATCATCCACCGTGGACCGGTCCCG
GTCTGTGAGCAACTCTCCCTCTTCTGCTGCCGCCGCGGCCACCTGTTCCC
GGTCTGCTTCAACGGGTAACATTACGTCAGCTGTGGAGAAAATCGGCATG
ACGGTGGATGGAGACTTGGCCACGGATGTGACCACACCCATGGCCAGCAC
CGCGCACTCCCGCGATAGTAGCTTGGAAACCACCACCACGACCACCACGA
CCACCTCACGTTTG
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