mRNA_H-paniculata_contig348.9279.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig348.9279.1 vs. uniprot
Match: D8LDA4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDA4_ECTSI) HSP 1 Score: 316 bits (810), Expect = 1.630e-95 Identity = 267/676 (39.50%), Postives = 340/676 (50.30%), Query Frame = 1
Query: 1 MSGEKPACGADDGWSPHKLPVSTKCGGDLHVDPYESRQDPLVCAALIEANAYVDLDDILDAERNFWKKTGVSYKTEELRLRVQMVLSDFKSVLTTLFLAYCKRESGLSRLADVRKTVIPKWTLGSPGVLGTTEA-APEEADDFXXXXXXXXXXXXXXXSTFDGDSPSGQVNREESAVVANIEEGKIGKFGNQSIPASIRTIVPQSPSRLQRIRKEDSLEGGSVNSGIDRCGVTACSVIEEG-GDD------GAGDARYSYQSFVASRSMSGAQFLDLVNDCTLLEGSFLWAEAAGVVRRVCVVGRKSKLGRSRGILNNLRNNDCGGGGTESRPIGASSTTPKXXXXXXXXXXXXXXXXXXXXXXKNRKRDNNASHGKTVCESGRC-KRKGPHKWNTGLSVESVVTIRYHGAGIKECCTQSLKLPQGATIPAAAGGDGGNFAETTGAHDNDRPDGTAGCYRDD---------KKD-----GANTESVVQEMSKEAAFLHGTRTAPP----AQVGLAVSHHRLRFAFEKHLLSQASVSNRAA-RQTDGEISAVMEVLDSRLTLHEACRTCISTMCILASPSAAVSRVSIPSVGRTGEGMAMKATWPAGGP----VLVSVGNDGMGPEEFARAVYHCGDTKTWDGMCPVSPQRIDSFVLHDLCERFLEKTGMSTLWWTR 1932
M+ EKPA GAD GWSPH+LP G L VDP +SR+DP+VCAAL++AN YVDL+D+L+AER FWK TGVS + E+LR RVQ+VL+DF+ VL T+F Y +RESGL RLA T +P L +A ++ XXXXXXXXXXXXXXX SA +E+ I + P + + P+RLQR E I GV+ + G GD+ G G ++ V SMSGAQFLDLV++C +LEG F WA A V+ RV GR K RS IL C G G T+PK N +R GK GR +R G N+G +V +V GA + + G TG N+ D AG R + KK G + + +SKEAAFL AP VGL ++HHRLRFAFE+HLL + ++RA+ RQ D EIS +ME LDSRLTL EACR C + +A A +R + R GE + P G L+S+G+D MGPEEF+RAV+HCGD KT DG+CPVS QR+ FV+HDL ERFLE+TG ++LWWTR
Sbjct: 1 MAREKPASGADVGWSPHRLPSFVGEHGRL-VDPCDSREDPIVCAALVKANVYVDLEDVLEAEREFWKNTGVSIRVEDLRHRVQLVLADFRDVLLTMFTDYSERESGLERLAVAPAT--------NPATLDAEKANGSKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSASAPAMALEQASIPTTSVAASPFPGLLALEECPTRLQRASSPARTER------IRAAGVSPVWSVGAGEGDEAEPCGGGTGMGTRGDRALVEKLSMSGAQFLDLVSNCEVLEGRFGWAAGASVIHRVTREGRNRKTARSLEILG------CPGA------HGGVDTSPKTENSDSAASARNTRCRPSSAGSGNPRRPQ-TKRGKQAPRKGRGGQRSGESPANSGRAVAAVEASGLSGAAMDDYVRGDGSDQSGXXXXXXXX----XXXSKTG---NNTSDCQAGVNRHNEIGKLHEMPKKSAQDGQGGGKDEETESLSKEAAFLKAR--APQENQLVSVGLPLAHHRLRFAFEQHLLPEVLNTSRASTRQADREISDIMEALDSRLTLREACRICAAVTGFVAI--ACPARQQATTRRRRGEENGLSGH-PEGEEKEEEALLSIGDDSMGPEEFSRAVFHCGDLKTRDGLCPVS-QRVGLFVVHDLYERFLERTGEASLWWTR 635
BLAST of mRNA_H-paniculata_contig348.9279.1 vs. uniprot
Match: A0A6H5JM25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM25_9PHAE) HSP 1 Score: 176 bits (445), Expect = 1.410e-43 Identity = 222/669 (33.18%), Postives = 281/669 (42.00%), Query Frame = 1
Query: 1 MSGEKPACGADDGWSPHKLPVSTKCGGDLHVDPYESRQDPLVCAALIEANAYVDLDDILDAERNFWKKTGVSYKTEELRLRVQMVLSDFKSVLTTLFLAYCKRESGLSRLADVRKTVIPKWTLGSPGVLGTTEA-APEEADDFXXXXXXXXXXXXXXXSTFDGDSPSGQVNREESAVVANIEEGKI-----GKF------------------GNQSIP-----------------------ASIRTI-VPQSPSRLQRIRKE--DSLEGGSVNSGIDR---CGVTAC-SVIEEGGDD------GAGDARYSYQSFVASRSMSGAQFLDLVNDCTLLEGSFLWAEAAGVVRRVCVVGRKSKLGRSRGILNNLRNNDCGG--GGTESRPIGASSTTPKXXXXXXXXXXXXXXXXXXXXXXKNRKRDNNASHGKTVCESGRCKRKGPHKWNTG-LSVESVVTIRYHGAGIKECCTQSLKLPQGATIPAAAGGDGGNFA---------ETTGAHDNDRPDGTAGCYRDD---------KKD-----GANTESVVQEMSKEAAFLHGT-------------------------RTAP----------------------------PAQ-----VGLAVSHHRLRFAFEKHLLSQASVSNRAARQTDGEISAVME 1575
M+ EKPA GAD GWSPH+LP G L VDP +SR+DP+VCAAL++AN Y+DL+D+ +AER FWK TGVS K E+LR RVQ+VL+DF+ VL T+F Y +RESGL RLA T +P L EA ++ XXXXXXXXXXXXXXX +G SG N SAV +E+ G+ G Q IP ASI T V SP R +E LE S + I+R GV+ SV GD+ G G + ++ V SMSGAQFLD V++C +LEG F WA A V+ RV GR K RS IL C G GG ++ P +S R R ++A+ G + + PHK G S ES G E QS GA + GDG + + TT N+ D AG + + KK G + + +SKEAAFL T R AP P + VGL ++HHRLRFAFE+HLL +A D EIS +ME
Sbjct: 1 MAREKPASGADVGWSPHRLPSFVGEHGHL-VDPCDSREDPIVCAALVKANVYIDLEDVFEAEREFWKNTGVSIKVEDLRHRVQLVLADFRDVLLTMFTDYSERESGLERLAVAPAT--------NPAKLNAEEANGSKKXXXXXXXXXXXXXXXXXXXXXXNGSVTSGSTNNSASAVAMALEQASADCDCDGRLLEAITVRTTDDLLSASLGGLQRIPGSEGVDTAFIIPPGAPPSAPSFQASIPTTSVAASPFPGLRALEECPTRLERASSPARIERIRAAGVSPVWSVGAREGDEAEPFGGGTGLGTHGERALVEKLSMSGAQFLDFVDNCEVLEGRFSWAAGASVIHRVTREGRNRKTARSIEILG------CPGAHGGVDTSPKTKNSDM-----------------EVSGRNTTRRCRPSSAASGNPRRPQTKRGEQAPHKGRGGHRSGESPTK---GGVAAAEASGQS-----GAAMGDRVRGDGSDKSGGXXXXXXXXTTSKSRNNTSDCQAGVNQQNEIGKLHEMPKKPAQDGLGGGEDIETESLSKEAAFLKVTGDTEGGQGGMLFPEFVEALTRLCLKRYAPWVAPRNQGPXXXXXXXXXXXXXXXRPRAPQENQLVSVGLPLAHHRLRFAFEQHLLPEA----------DREISDIME 619
BLAST of mRNA_H-paniculata_contig348.9279.1 vs. uniprot
Match: A0A6H5JFN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFN5_9PHAE) HSP 1 Score: 119 bits (298), Expect = 6.590e-28 Identity = 63/124 (50.81%), Postives = 82/124 (66.13%), Query Frame = 1
Query: 1570 MEVLDSRLTLHEACRTCISTMCILASPSAAVSRVSIPSVGRTGEGMAMKATWPA---GGPVLVSVGNDGMGPEEFARAVYHCGDTKTWDGMCPVSPQRIDSFVLHDLCERFLEKTGMSTLWWTR 1932
++ LDSRLTLHEACR C + +A A +R + R GE + G L+S+G+D M PE+F+RAV+HCGD KTWDG+CPVS QR+ FV+HDL ERFLE+TG ++LWWTR
Sbjct: 15 LQALDSRLTLHEACRICTAVTGFVAI--ACPARQQATTRRRRGEENGLSGHPEGEEKGEEALLSIGDDSMDPEQFSRAVFHCGDLKTWDGLCPVS-QRVGRFVVHDLYERFLERTGEASLWWTR 135 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig348.9279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig348.9279.1 >prot_H-paniculata_contig348.9279.1 ID=prot_H-paniculata_contig348.9279.1|Name=mRNA_H-paniculata_contig348.9279.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=645bp MSGEKPACGADDGWSPHKLPVSTKCGGDLHVDPYESRQDPLVCAALIEANback to top mRNA from alignment at H-paniculata_contig348:2742..11497+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig348.9279.1 ID=mRNA_H-paniculata_contig348.9279.1|Name=mRNA_H-paniculata_contig348.9279.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8756bp|location=Sequence derived from alignment at H-paniculata_contig348:2742..11497+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig348:2742..11497+ >mRNA_H-paniculata_contig348.9279.1 ID=mRNA_H-paniculata_contig348.9279.1|Name=mRNA_H-paniculata_contig348.9279.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3870bp|location=Sequence derived from alignment at H-paniculata_contig348:2742..11497+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |