mRNA_H-paniculata_contig34629.9241.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig34629.9241.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE) HSP 1 Score: 119 bits (298), Expect = 4.090e-28 Identity = 66/162 (40.74%), Postives = 96/162 (59.26%), Query Frame = 1
Query: 1 SLGGSSYVMITVDDYSRFQAVKFIKTKSDATAAFQSYIAEYIT---PKGLKIGAIRTDNGGEF-DGDFHLKLDEHCISHELTPTDTPQYNGIAKRWLGLLREKTIA-------LMQGQAEGGSEKLWAEAMNYACNITNMSCTSSIKGHVTPYEKWYGNTAP 453
SLGG Y +I DDY+R+ V F+K KSDA AF+ Y+AE P + + +R+DNGGEF +G+F ++CI E TP +P+YNG+A+R LGL+++ +A L G S LWAEA+ ++CN N + T+S +PYE W+G+ P
Sbjct: 748 SLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPP 905
BLAST of mRNA_H-paniculata_contig34629.9241.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 119 bits (298), Expect = 4.110e-28 Identity = 66/162 (40.74%), Postives = 96/162 (59.26%), Query Frame = 1
Query: 1 SLGGSSYVMITVDDYSRFQAVKFIKTKSDATAAFQSYIAEYIT---PKGLKIGAIRTDNGGEF-DGDFHLKLDEHCISHELTPTDTPQYNGIAKRWLGLLREKTIA-------LMQGQAEGGSEKLWAEAMNYACNITNMSCTSSIKGHVTPYEKWYGNTAP 453
SLGG Y +I DDY+R+ V F+K KSDA AF+ Y+AE P + + +R+DNGGEF +G+F ++CI E TP +P+YNG+A+R LGL+++ +A L G S LWAEA+ ++CN N + T+S +PYE W+G+ P
Sbjct: 583 SLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPP 740
BLAST of mRNA_H-paniculata_contig34629.9241.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 119 bits (298), Expect = 4.120e-28 Identity = 66/162 (40.74%), Postives = 96/162 (59.26%), Query Frame = 1
Query: 1 SLGGSSYVMITVDDYSRFQAVKFIKTKSDATAAFQSYIAEYIT---PKGLKIGAIRTDNGGEF-DGDFHLKLDEHCISHELTPTDTPQYNGIAKRWLGLLREKTIA-------LMQGQAEGGSEKLWAEAMNYACNITNMSCTSSIKGHVTPYEKWYGNTAP 453
SLGG Y +I DDY+R+ V F+K KSDA AF+ Y+AE P + + +R+DNGGEF +G+F ++CI E TP +P+YNG+A+R LGL+++ +A L G S LWAEA+ ++CN N + T+S +PYE W+G+ P
Sbjct: 596 SLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPP 753
BLAST of mRNA_H-paniculata_contig34629.9241.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 119 bits (298), Expect = 4.130e-28 Identity = 66/162 (40.74%), Postives = 96/162 (59.26%), Query Frame = 1
Query: 1 SLGGSSYVMITVDDYSRFQAVKFIKTKSDATAAFQSYIAEYIT---PKGLKIGAIRTDNGGEF-DGDFHLKLDEHCISHELTPTDTPQYNGIAKRWLGLLREKTIA-------LMQGQAEGGSEKLWAEAMNYACNITNMSCTSSIKGHVTPYEKWYGNTAP 453
SLGG Y +I DDY+R+ V F+K KSDA AF+ Y+AE P + + +R+DNGGEF +G+F ++CI E TP +P+YNG+A+R LGL+++ +A L G S LWAEA+ ++CN N + T+S +PYE W+G+ P
Sbjct: 739 SLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPP 896
BLAST of mRNA_H-paniculata_contig34629.9241.1 vs. uniprot
Match: A0A6H5K1N9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N9_9PHAE) HSP 1 Score: 118 bits (295), Expect = 1.010e-27 Identity = 66/162 (40.74%), Postives = 95/162 (58.64%), Query Frame = 1
Query: 1 SLGGSSYVMITVDDYSRFQAVKFIKTKSDATAAFQSYIAEYIT---PKGLKIGAIRTDNGGEF-DGDFHLKLDEHCISHELTPTDTPQYNGIAKRWLGLLREKTIA-------LMQGQAEGGSEKLWAEAMNYACNITNMSCTSSIKGHVTPYEKWYGNTAP 453
SLGG Y +I DDY+R+ V F+K KSDA AF+ Y+ E P + + +R+DNGGEF +G+F ++CI E TP +P+YNG+A+R LGL+++ IA L G S LWAEA+ ++CN N + T+S +PYE W+G+ P
Sbjct: 381 SLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLKEKRADGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAAIAARIQAPTLYPGAPNYRS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPP 538
BLAST of mRNA_H-paniculata_contig34629.9241.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE) HSP 1 Score: 118 bits (295), Expect = 1.040e-27 Identity = 65/161 (40.37%), Postives = 96/161 (59.63%), Query Frame = 1
Query: 1 SLGGSSYVMITVDDYSRFQAVKFIKTKSDATAAFQSYIAEYITPKGLK--IGAIRTDNGGEF-DGDFHLKLDEHCISHELTPTDTPQYNGIAKRWLGLLREKTIAL-MQGQAEGG------SEKLWAEAMNYACNITNMSCTSSIKGHVTPYEKWYGNTAP 453
S+GG Y MI DD++R + F++ KSDA +AF+S++A + G+ + +R+DNGGEF G+F +E I E TP +PQYNG+A+R LGL+ E +A +Q + G ++KLWAEAM++AC N + S+ +PYE WYG P
Sbjct: 343 SVGGKYYPMIVKDDFTRRAWIYFLRNKSDAASAFRSFLAS-VRADGIPSLVETVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARP 502
BLAST of mRNA_H-paniculata_contig34629.9241.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE) HSP 1 Score: 114 bits (286), Expect = 1.350e-27 Identity = 63/161 (39.13%), Postives = 97/161 (60.25%), Query Frame = 1
Query: 1 SLGGSSYVMITVDDYSRFQAVKFIKTKSDATAAFQSYIAEYITPKGLK--IGAIRTDNGGEF-DGDFHLKLDEHCISHELTPTDTPQYNGIAKRWLGLLREKTIAL-MQGQAEGG------SEKLWAEAMNYACNITNMSCTSSIKGHVTPYEKWYGNTAP 453
S+GG Y +I DD++R + F++ KSDA +AF++++A + G+ + +R+DNGG+F GDF +E I E TP +PQYNG+A+R LGL+ E +A +Q + G ++KLWAEAM++AC N + S+ ++PYE WYG P
Sbjct: 107 SVGGKHYPIIVKDDFTRHTWMYFLRNKSDAGSAFRTFLAS-VRANGVPSFVEIVRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRP 266
BLAST of mRNA_H-paniculata_contig34629.9241.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE) HSP 1 Score: 116 bits (290), Expect = 3.180e-27 Identity = 66/162 (40.74%), Postives = 97/162 (59.88%), Query Frame = 1
Query: 1 SLGGSSYVMITVDDYSRFQAVKFIKTKSDATAAFQSYIAEY---ITPKGLKIGAIRTDNGGEF-DGDFHLKLDEHCISHELTPTDTPQYNGIAKRWLGLLREKTIAL-MQGQAEGG------SEKLWAEAMNYACNITNMSCTSSIKGHVTPYEKWYGNTAP 453
S+GG Y MI DD++R + F+K +SDA AF++++A I P ++I +R+DNGGEF G+F +E I E TP +PQYNG+A+R LGL+ E +A +Q + G ++KLWAEAM++AC N + S+ ++PYE WYG P
Sbjct: 327 SVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRANIVPSFVEI--VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRP 486
BLAST of mRNA_H-paniculata_contig34629.9241.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE) HSP 1 Score: 115 bits (289), Expect = 6.530e-27 Identity = 64/161 (39.75%), Postives = 97/161 (60.25%), Query Frame = 1
Query: 1 SLGGSSYVMITVDDYSRFQAVKFIKTKSDATAAFQSYIAEYITPKGLK--IGAIRTDNGGEF-DGDFHLKLDEHCISHELTPTDTPQYNGIAKRWLGLLREKTIAL-MQGQAEGG------SEKLWAEAMNYACNITNMSCTSSIKGHVTPYEKWYGNTAP 453
S+GG Y MI DD++R + F++ KSDA +AF++++A + G+ + +R+DNGGEF G+F +E I E TP +PQYNG+A+R LGL+ E +A +Q + G ++KLWAEAM++AC N + S+ ++PYE WYG P
Sbjct: 260 SVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLAS-VRANGVPSFVEIVRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRP 419
BLAST of mRNA_H-paniculata_contig34629.9241.1 vs. uniprot
Match: A0A6H5KKB4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB4_9PHAE) HSP 1 Score: 110 bits (276), Expect = 1.120e-26 Identity = 62/152 (40.79%), Postives = 88/152 (57.89%), Query Frame = 1
Query: 1 SLGGSSYVMITVDDYSRFQAVKFIKTKSDATAAFQSYIAEYITPK-GLKIGAIRTDNGGEFDGDFHLKLDEHCISHELTPTDTPQYNGIAKRWLGLLREKTIALMQGQAE-----GGSEKLWAEAMNYACNITNMSCTSSIKGHVTPYEKWY 438
S+GG+ Y +I DD +R+ V F+K KSDA AAF+ Y+A+Y ++ RTD GGEF G F + I E TP +TP+YNG+A+R LGLL + +A E S LWAEA++ AC+ N + T+ GH +PYE ++
Sbjct: 5 SIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEPYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRYGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMNCTATTGNPGHKSPYELFH 156 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34629.9241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig34629.9241.1 >prot_H-paniculata_contig34629.9241.1 ID=prot_H-paniculata_contig34629.9241.1|Name=mRNA_H-paniculata_contig34629.9241.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=156bp MITVDDYSRFQAVKFIKTKSDATAAFQSYIAEYITPKGLKIGAIRTDNGGback to top mRNA from alignment at H-paniculata_contig34629:955..1446+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig34629.9241.1 ID=mRNA_H-paniculata_contig34629.9241.1|Name=mRNA_H-paniculata_contig34629.9241.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=492bp|location=Sequence derived from alignment at H-paniculata_contig34629:955..1446+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig34629:955..1446+ >mRNA_H-paniculata_contig34629.9241.1 ID=mRNA_H-paniculata_contig34629.9241.1|Name=mRNA_H-paniculata_contig34629.9241.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at H-paniculata_contig34629:955..1446+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |