mRNA_H-paniculata_contig34528.9211.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34528.9211.1
Unique NamemRNA_H-paniculata_contig34528.9211.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig34528.9211.1 vs. uniprot
Match: A0A8J5GP83_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5GP83_ZINOF)

HSP 1 Score: 232 bits (592), Expect = 4.950e-65
Identity = 146/412 (35.44%), Postives = 216/412 (52.43%), Query Frame = 1
Query:    4 IESGCTGHDLTAQRDLFQNVPQVVRSPIATAGKGELGVEGQGVVEGSIWTAERARRIIFCSVFHVPEALDSILSVERMVSQGMEANFDSERRQLY--CNGITIPFEHTSRKEYSLRMINTEKRQHVVD----TKLLHERLGHVRDLPTVARQQ--------GIRLSGKLGVCSVYEKGKTSKQPVNRYREERTTEPLELVHTDIAGPV-VKSFGECRFAIIFVDDYSRMRKVCTLRQKSEALWALKQFERDVARAKGL*IKRLWSDQGGEYTGKAFR*FCAENGIKQEFSAAYTPHQDGVAERSWRSIFNMARATMITVNMGHRYWAEAVRSAVYCLNRAPTRPHNGGTPYEKWHGKTVK*DNLRVFGCTAYVMFQSQQRRKLDDKV*AGVFLGYDEDSPSYRIYNPENKSI 1194
            ++SGC+ H +T  RD F  +   + S I          +G+G +  ++ T E   ++I   V +VPE   ++LSV +++ +     FD  R Q++   N + +       K +SL M   E R   VD    + L H R GH+ D   +  ++         I  SGK+    VY  GK  K P  +   +  + PLELVH+DI GP+   + G  R+ I+F+DDY+RM  +  L QKSEA     QF+    R  G  IK L +D+GGEY    F  +C  NGIK++ + +YTP Q+GVAER  R+I  MAR  +    + + YWAEAV +A Y +NR+PT+  +  TPYE WH K    D+ ++FG  AY +  SQ+R K D K    +F+GY  +S  YR+ +P    I
Sbjct:  319 LDSGCSNH-MTGNRDTFVKLDPNITSQIILGDGSRKSGKGKGDI--AVQTKEGKEKLI-TDVLYVPELSHNLLSVGQLMEKNFSFLFDDGRCQIFDKTNKVIVTNIEMKNKTFSLTMPLVEDRALKVDNAELSSLWHLRYGHLHDRALILLKEKNMVIGLPSIEPSGKVCEGCVY--GKMHKLPFPKTSWQAKS-PLELVHSDICGPMQTPTPGRKRYFILFIDDYTRMMWIYFLNQKSEAFSTFMQFKAQAERESGFLIKSLRTDRGGEYLSNPFSEYCKANGIKRQLTTSYTPQQNGVAERKNRTIVEMARNMLKYKGIPNLYWAEAVHTAAYIMNRSPTKAVHNMTPYEAWHKKKPVVDHFKIFGSLAYALLPSQRREKFDSKGQKLIFIGYSNESKGYRLLDPSTLKI 723          
BLAST of mRNA_H-paniculata_contig34528.9211.1 vs. uniprot
Match: A0A8J5F3N7_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5F3N7_ZINOF)

HSP 1 Score: 233 bits (594), Expect = 2.120e-64
Identity = 146/412 (35.44%), Postives = 217/412 (52.67%), Query Frame = 1
Query:    4 IESGCTGHDLTAQRDLFQNVPQVVRSPIATAGKGELGVEGQGVVEGSIWTAERARRIIFCSVFHVPEALDSILSVERMVSQGMEANFDSERRQLY--CNGITIPFEHTSRKEYSLRMINTEKRQHVVD----TKLLHERLGHVRDLPTVARQQ--------GIRLSGKLGVCSVYEKGKTSKQPVNRYREERTTEPLELVHTDIAGPV-VKSFGECRFAIIFVDDYSRMRKVCTLRQKSEALWALKQFERDVARAKGL*IKRLWSDQGGEYTGKAFR*FCAENGIKQEFSAAYTPHQDGVAERSWRSIFNMARATMITVNMGHRYWAEAVRSAVYCLNRAPTRPHNGGTPYEKWHGKTVK*DNLRVFGCTAYVMFQSQQRRKLDDKV*AGVFLGYDEDSPSYRIYNPENKSI 1194
            ++SGC+ H +T  RD F  +   + S I          +G+G +  ++ T E   ++I   V +VPE   ++LSV +++ +     FD  R Q++   N + +       K +SL M   E R   VD    + L H R GH+ D   +  ++         I  SGK+    VY  GK  K P  +   +  + PLELVH+DI GP+   + G  R+ I+F+DDY+RM  +  L QKSEA     QF+    R  G  IK L +D+GGEY    F  +C  NGIK++ + +YTP Q+GVAER  R+I  MAR+ +    + + YWAEAV +A Y +NR+PT+  +  TPYE WH K    D+ ++FG  AY +  SQ+R K D K    +F+GY  +S  YR+ +P    I
Sbjct:  289 LDSGCSNH-MTGNRDTFVKLDPNITSQIILGDGSRKSGKGKGDI--AVQTKEGKEKLI-TDVLYVPELSHNLLSVGQLMEKNFSFLFDDGRCQIFDKTNKVIVTNIEMKNKTFSLTMPLVEDRALKVDNAELSSLWHLRYGHLHDRALILLKEKNMVIGLPSIEPSGKVCEGCVY--GKMHKLPFPKTSWQAKS-PLELVHSDICGPMQTPTPGRKRYFILFIDDYTRMMWIYFLNQKSEAFSTFMQFKAQAERESGFLIKSLRTDRGGEYLSNPFSEYCKANGIKRQLTTSYTPQQNGVAERKNRTIVEMARSMLKYKGIPNLYWAEAVHTAAYIMNRSPTKAVHNMTPYEAWHKKKPVVDHFKIFGSLAYALLPSQRREKFDSKGQKLIFIGYSNESKGYRLLDPSTFKI 693          
BLAST of mRNA_H-paniculata_contig34528.9211.1 vs. uniprot
Match: A0A2H9ZU53_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2H9ZU53_9ASPA)

HSP 1 Score: 222 bits (566), Expect = 2.640e-64
Identity = 140/403 (34.74%), Postives = 226/403 (56.08%), Query Frame = 1
Query:   31 LTAQRDLFQNVPQVVRSPIATAGKGELGVEGQGVVEGSIWTAERARRIIFCSVFHVPEALDSILSVERMVSQGMEANFDSERRQLY----CNGITIPFEHTSRKEYSLRMINTEKRQHVV----DTKLLHERLGH--VRDLPTVARQQGI----RLSGKLGVCSVYEKGKTSKQPVNRYREERTTEPLELVHTDIAGPV-VKSFGECRFAIIFVDDYSRMRKVCTLRQKSEALWALKQFERDVARAKGL*IKRLWSDQGGEYTGKAFR*FCAENGIKQEFSAAYTPHQDGVAERSWRSIFNMARATMITVNMGHRYWAEAVRSAVYCLNRAPTRPHNGGTPYEKWHGKTVK*DNLRVFGCTAYVMFQSQQRRKLDDKV*AGVFLGYDEDSPSYRIYNPENKSI 1194
            +++ R +FQ++ +  +  +      ++ VEG+G +   I TA+   + +  +VF VP+   ++LSV ++V+ G    FD+   ++     C  I    + TS   + LR+ +      +V    ++ L H R GH  +  L  + ++  +    +++    +C     GK S++     R  R T PLELV++D+ GP+ ++S    R+ I+F+DDY+RM  V  L+ KSEAL A K F+  V R  G  IK L +D+GGE+    F+ FC ENGI +E +A YTP Q+GVAER  R+I  MAR+ +    + +++WAE+V +AVY LN +PT+     T YE W G+  +  +L++FGC AYV   S  R KL+DK    +F+GY   S +YR+YNP +K +
Sbjct:    1 MSSVRSMFQDLDESQKLQVRLGDDKQVEVEGKGTLV--IKTAQGNTKHLD-NVFFVPKLAHNLLSVGQLVASGYSILFDNATCKIKDKESCQ-IIADIQMTSNNMFPLRISSIGNHALIVKKMNESTLWHFRYGHLHINGLKLLNQKNMVIGLPKINDLENICEECLYGKQSRKSFLIGRTCRATHPLELVYSDLCGPMRIESLSGSRYFILFIDDYTRMNWVYFLKNKSEALEAFKIFKAFVERQSGYFIKVLRTDRGGEFLSHEFKAFCEENGIHRELTAPYTPEQNGVAERKNRTIVEMARSLLKAKGIPNQFWAESVATAVYLLNISPTKAILNRTLYEVWKGRKSRISHLKIFGCIAYVYVNSHDRHKLEDKSEKCIFIGYCPQSKAYRLYNPCSKKL 399          
BLAST of mRNA_H-paniculata_contig34528.9211.1 vs. uniprot
Match: A0A2Z7BCE9_9LAMI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7BCE9_9LAMI)

HSP 1 Score: 227 bits (578), Expect = 3.520e-64
Identity = 137/412 (33.25%), Postives = 220/412 (53.40%), Query Frame = 1
Query:    4 IESGCTGHDLTAQRDLFQNVPQVVRSPIATAGKGELGVEGQGVVE-GSIWTAERARRIIFCSVFHVPEALDSILSVERMVSQGMEANFDSER---RQLYCNGITIPFEHTSRKEYSLRMINTEKRQHVVDTK----LLHERLGHVRD--LPTVARQQGIRLSGKL----GVCSVYEKGKTSKQPVNRYREERTTEPLELVHTDIAGPV-VKSFGECRFAIIFVDDYSRMRKVCTLRQKSEALWALKQFERDVARAKGL*IKRLWSDQGGEYTGKAFR*FCAENGIKQEFSAAYTPHQDGVAERSWRSIFNMARATMITVNMGHRYWAEAVRSAVYCLNRAPTRPHNGGTPYEKWHGKTVK*DNLRVFGCTAYVMFQSQQRRKLDDKV*AGVFLGYDEDSPSYRIYNPENKSI 1194
            I+SGC+ H +T  +++F+ + +  R  I      ++ VEG+G VE  S++   +    +  +V + PE   ++ SV +++  G    FD       +     +           + L     E    V  TK    L H R GH+    L  + +++ +R   ++     VC     GK SK+     +  R TEPLELVH D+ GP+  ++ G  ++ ++FVDDYSRM  V  L+ KSEA     +F+  V + KG  +K L +D+GGE+T   F  +C ++GI +E +A YTP Q+GVAER  R+I  MAR+ + +  + + +WAEAV +AVY +N +PT+     TPYE W GK    ++L++FGC  YV+  + +R KL++K    +F+GY   S +YR+YNP    +
Sbjct:  158 IDSGCSNH-MTGMKEMFRELDETQRRVIRLGNNKQIQVEGKGTVEVQSVFGKSK----LISNVLYTPELAHNLFSVGQLLLSGFTILFDESHCIITEKATGHVLAKVNMAENHMFPLVFSKLESHAMVTMTKNASQLWHLRYGHLHTAGLRLLNQKEMVRGLPRIDVDGAVCEGCMYGKQSKRSFPVGQSWRATEPLELVHADLCGPMRTETLGGSKYFLLFVDDYSRMSWVYFLKFKSEAFGQFFKFKALVEKQKGSNLKILRTDRGGEFTSMEFNQYCEKHGIHKELTAPYTPEQNGVAERKNRTIVEMARSMLKSKGLPYNFWAEAVTTAVYLINLSPTKAVMNKTPYEAWSGKRPSVEHLKIFGCIVYVLINANERHKLEEKSIKCIFIGYCSQSKAYRVYNPATGKV 564          
BLAST of mRNA_H-paniculata_contig34528.9211.1 vs. uniprot
Match: A0A151T355_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T355_CAJCA)

HSP 1 Score: 232 bits (592), Expect = 3.560e-64
Identity = 148/414 (35.75%), Postives = 218/414 (52.66%), Query Frame = 1
Query:    1 IIESGCTGHDLTAQRDLFQNVPQVVRSPIATAGKGE-LGVEGQGVVEGSIWTAERARRIIFCSVFHVPEALDSILSVERMVSQGMEANFDSERRQLY----CNGITIPFEHTSRKEYSLRMINTEKRQH---VVDTKLLHERLGHVRDLPTVARQQGIRLSGKL-------GVCSVYEKGKTSKQPVNRYREERTTEPLELVHTDIAGPV-VKSFGECRFAIIFVDDYSRMRKVCTLRQKSEALWALKQFERDVARAKGL*IKRLWSDQGGEYTGKAFR*FCAENGIKQEFSAAYTPHQDGVAERSWRSIFNMARATMITVNMGHRYWAEAVRSAVYCLNRAPTRPHNGGTPYEKWHGKTVK*DNLRVFGCTAYVMFQSQQRRKLDDKV*AGVFLGYDEDSPSYRIYNPENKSI 1194
            +I+SGCT H +T    +F+ +     S + T G GE + V+G+GVV  ++ T    + I    V  VPE   ++LSV +M+ +    +F+  + ++     C  +TI       K + +    T        V D+ L H+RLGH     T+ R     L   L        +C V + GK  K P  +    R TE L+LVHTD+ GP+   S    ++ ++F+DDY+RM  V  L++KS+      +F+  V    GL +KRL SD G EYT   F+ FC + GI+ + +  YTP Q+GV+ER  R++  MAR  +    +   +WAEAV ++VY LN  PT+   G TP+E WHG+T   ++L+VFGC  Y +    +R KLD K   G+FLGY   S  YRIYNP  K I
Sbjct:  267 LIDSGCTNH-MTHDASIFKELDLSYLSKV-TIGNGECVDVKGKGVV--AVETPSGTKYIY--DVLFVPEINLNLLSVGQMLEKNYVLHFEDMKCKIIDPSGCELMTIRMRD---KSFPIEWKQTAMHAFPSAVNDSFLWHKRLGHF-SYSTLKRMSSNDLVKNLPAIQDNANLCDVCQYGKQRKLPFPKEASWRATEKLQLVHTDVCGPMSTTSLNGSKYFLLFIDDYTRMSWVFFLKKKSDVFANFLKFKFMVENETGLQVKRLRSDNGTEYTAGEFKKFCEQVGIQHQLTVPYTPQQNGVSERKNRTVMEMARCLLFEKGLPKTFWAEAVNTSVYLLNLLPTKALKGNTPFEAWHGRTPSVEHLKVFGCVCYALVPEVKRDKLDQKSEVGIFLGYSSYSKGYRIYNPATKKI 670          
BLAST of mRNA_H-paniculata_contig34528.9211.1 vs. uniprot
Match: A0A151R9Q4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151R9Q4_CAJCA)

HSP 1 Score: 224 bits (571), Expect = 4.540e-64
Identity = 140/423 (33.10%), Postives = 225/423 (53.19%), Query Frame = 1
Query:    1 IIESGCTGHDLTAQRDLFQNVPQVVRSPIATAGKGE-LGVEGQGVVEGSIWTAERARRIIFCSVFHVPEALDSILSVERMVSQGMEANFDSERRQLY----CNGITIPFEHTSRKEYSLRMINTEKRQH-----VVDTKLLHERLGH--------------VRDLPTVARQQGIRLSGKLGVCSVYEKGKTSKQPVNRYREERTTEPLELVHTDIAGPV-VKSFGECRFAIIFVDDYSRMRKVCTLRQKSEALWALKQFERDVARAKGL*IKRLWSDQGGEYTGKAFR*FCAENGIKQEFSAAYTPHQDGVAERSWRSIFNMARATMITVNMGHRYWAEAVRSAVYCLNRAPTRPHNGGTPYEKWHGKTVK*DNLRVFGCTAYVMFQSQQRRKLDDKV*AGVFLGYDEDSPSYRIYNPENKSI 1194
            +I+SGCT H +T    +F+ + Q   S + T G GE + V+G+GV+  ++ T+   + I    V +VPE   ++LSV +M+ +    +F+  +  ++    C  ++I       K+ S  +   +   H     V D+ L H+RLGH              +++LP++           + VC V + GK  + P       R  E L+L+HTD+ GP+ + S    ++ ++F+DD++RM  V  L+QK +   A ++F+  V    G  IK+L SD G EYT   F+ FC + GI+ +F+  YTP Q+GV+ER  R++  MAR  +    +   +WAEAV ++VY LN  PT+   G TPYE W G+    ++L++FGC  Y    + +R KLD K   G+FLGY  ++  YR+YN E K I
Sbjct:  120 LIDSGCTNH-MTNDASIFKELDQSHFSKV-TVGNGESVEVKGKGVI--AVETSSGTKYI--SDVLYVPEINQNLLSVGQMLEKNYTLHFEDMKCTIFDPSGCELMSIRM-----KDKSFPIEWKQPAMHAFPSSVDDSVLWHKRLGHFSYSTLKKISSNGLIQNLPSI--------EDDVDVCDVCQFGKQCRLPFPAVASWRAVEKLQLIHTDVCGPMSIASLNGNKYFLLFIDDFTRMSWVFFLKQKLDVFAAFQKFKTLVENEAGCQIKKLRSDNGTEYTAGEFKKFCDQAGIQHQFTVPYTPQQNGVSERKNRTVMEMARCLLFEKGLPKTFWAEAVNTSVYLLNLLPTKALKGKTPYEAWCGRKPSVEHLKIFGCVCYTHVPNVKRDKLDHKCEVGIFLGYSINTKGYRVYNLETKKI 523          
BLAST of mRNA_H-paniculata_contig34528.9211.1 vs. uniprot
Match: A0A251SKN6_HELAN (Putative zinc finger, CCHC-type n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251SKN6_HELAN)

HSP 1 Score: 230 bits (587), Expect = 2.120e-63
Identity = 147/410 (35.85%), Postives = 222/410 (54.15%), Query Frame = 1
Query:    4 IESGCTGHDLTAQRDLFQNVPQVVRSPIATAGKGELGVEGQGVVEGSIWTAERARRIIFCSVFHVPEALDSILSVERMVSQGMEANFDSERRQLYC--NGITIPFEHTSRKEYSLRM---INTEKRQHVVDTKLL-HERLGHVR-DLPTVARQQGI-----RLSGKLGVCSVYEKGKTSKQPVNRYREERTTEPLELVHTDIAGPV-VKSFGECRFAIIFVDDYSRMRKVCTLRQKSEALWALKQFERDVARAKGL*IKRLWSDQGGEYTGKAFR*FCAENGIKQEFSAAYTPHQDGVAERSWRSIFNMARATMITVNMGHRYWAEAVRSAVYCLNRAPTRPHNGGTPYEKWHGKTVK*DNLRVFGCTAYVMFQSQQRRKLDDKV*AGVFLGYDEDSPSYRIYNPENKSI 1194
            ++SGC+ H +T  RDLF N+ + ++  + T     L V G G V  SI    R R+I   +VF+V     ++LSV +++++G    F  +R  +    N +      TS K + L +   IN        DT +L H+R GHV  D       +G+     ++  +  +C     GK +K+   R    + ++PL+LVH+DI GP+  +S G CR+ I F+DDY+R   V  L+ KSEAL   K+F+    +     IK L SD+GGEY    F+ +   NGI+ + + +Y+P Q+GVAER  R++  ++R+ M    +   YWAEAV  A Y LNR  T+     TPYE W+G     ++L+VFGC AYV    Q+R KLD K    VF+GY E+S  Y++YNP++  I
Sbjct: 1056 LDSGCSNH-MTGNRDLFINLDESLKKEVRTGDDKRLDVIGSGEVSVSI--KGRTRKIP--NVFYVKGLKHNLLSVGQLINKGYAILFQKDRCIIKDAENEVIGKIRMTSNKMFPLHLDSDINLAMTMTTKDTTILWHKRYGHVNVDTLISMENKGLVFGLPKIMKRESLCEGCISGKQTKKTFPRKAIWQASKPLQLVHSDICGPMRTESIGGCRYFITFIDDYTRKSWVYFLKYKSEALSYFKRFKALNEKQSDHLIKTLRSDRGGEYCSNEFQEYLKVNGIRHQLTNSYSPQQNGVAERKNRTLMELSRSMMNAKELPTCYWAEAVACATYILNRTVTKTRPNITPYEAWNGNKPNVEHLKVFGCLAYVHIPKQRRDKLDKKTEKTVFVGYSENSKGYKLYNPQSNKI 1460          
BLAST of mRNA_H-paniculata_contig34528.9211.1 vs. uniprot
Match: A0A6D2IM54_9BRAS (Uncharacterized protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2IM54_9BRAS)

HSP 1 Score: 228 bits (581), Expect = 1.170e-62
Identity = 144/437 (32.95%), Postives = 229/437 (52.40%), Query Frame = 1
Query:    4 IESGCTGHDLTAQRDLFQNVPQVVRSPIATAGKGELGVEGQG----VVEGSIWTAERARRIIFCSVFHVPEALDSILSVERMVSQGMEANFDSERRQLYCNGITIPFEHTSRKEYSLRMINTEKRQHVV--------DTK-------------LLHERLGH--------------VRDLPTVARQQGIRLSGKLGVCSVYEKGKTSKQPVNRYREERTTEPLELVHTDIAGPVVK-SFGECRFAIIFVDDYSRMRKVCTLRQKSEALWALKQFERDVARAKGL*IKRLWSDQGGEYTGKAFR*FCAENGIKQEFSAAYTPHQDGVAERSWRSIFNMARATMITVNMGHRYWAEAVRSAVYCLNRAPTRPHNGGTPYEKWHGKTVK*DNLRVFGCTAYVMFQSQQRRKLDDKV*AGVFLGYDEDSPSYRIYNPENKSI 1194
            ++SGC+ H +   R+ F +  +  R  +       + VEG+G     + G+I         +  SV++VP    +++S+ ++  +G+    D +  +++         H  ++   +R + ++ R  VV        DT+             L H+RLGH              V  LP ++       +G  G+C +  +GK +++ + +    R +  L+LVHTDI GP+   S    R+ I F+DDYSR      L +KSEAL A K+F+    R  GL +  L SD+GGEY   AF+ +C ENGIK++ +AAYTP Q+G+AER  RSI NMAR  M+ +++  R+W EAV+ AV+ LNR+P+      TP E+W       +++RVFGC AY +   ++R KLD+K    VF+G  ++S +YR+YNPE K I
Sbjct:  302 LDSGCSNH-MCGVREWFVDFDETFRQNVKLGDDRRMMVEGRGNLRLEINGTIQ--------LISSVYYVPGLKSNLMSIGQLQQKGLRIVIDEDVCEIW---------HKEQRRLLMRSVMSKNRLFVVLAAVKEARDTEEGCFQVTEEKMEDLWHKRLGHLSHSGMQSLVEKKMVNGLPQLSH------NGDGGLCDICMRGKQNRENIPKKSSWRASRALQLVHTDICGPIAPTSASGKRYIINFIDDYSRKCWSFLLAEKSEALRAFKEFKVAAEREMGLSLVSLRSDRGGEYNSAAFQDYCRENGIKRQLTAAYTPQQNGIAERKNRSIMNMARCMMLGMSVPRRFWPEAVQYAVHVLNRSPSAALGDVTPDERWSNHKPSVEHVRVFGCVAYALVPYERRVKLDEKSIQCVFVGVSKESKAYRLYNPETKKI 714          
BLAST of mRNA_H-paniculata_contig34528.9211.1 vs. uniprot
Match: A0A251UIF2_HELAN (Integrase catalytic domain-containing protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UIF2_HELAN)

HSP 1 Score: 227 bits (578), Expect = 3.040e-62
Identity = 146/410 (35.61%), Postives = 223/410 (54.39%), Query Frame = 1
Query:    4 IESGCTGHDLTAQRDLFQNVPQVVRSPIATAGKGELGVEGQGVVEGSIWTAERARRIIFCSVFHVPEALDSILSVERMVSQGMEANFDSERRQLYC--NGITIPFEHTSRKEYSLRM---INTEKRQHVVDTKLL-HERLGHVR-DLPTVARQQGI-----RLSGKLGVCSVYEKGKTSKQPVNRYREERTTEPLELVHTDIAGPV-VKSFGECRFAIIFVDDYSRMRKVCTLRQKSEALWALKQFERDVARAKGL*IKRLWSDQGGEYTGKAFR*FCAENGIKQEFSAAYTPHQDGVAERSWRSIFNMARATMITVNMGHRYWAEAVRSAVYCLNRAPTRPHNGGTPYEKWHGKTVK*DNLRVFGCTAYVMFQSQQRRKLDDKV*AGVFLGYDEDSPSYRIYNPENKSI 1194
            ++SGC+ H +T  RDLF N+ + ++  + T     L V G G V  SI    R R+I   +VF+V     ++LSV +++++G    F  +R  +    + +      TS K + L +   IN        DT +L H+R GHV  D       +G+     ++  +  +C     GK +K+   R    + ++PL+LVH+DI GP+  +S G CR+ I F+DDY+R   V  L+ KSEAL   K+F+    +     IK L SD+GGEY   AF+ +   N I+ + + +Y+P Q+GVAER  R++  ++R+ M    + + YWAEAV  A Y LNR  T+     TPYE W+G     ++L+VFGC AYV    Q+R KLD K    VF+GY E+S  Y++YNP++  I
Sbjct:  304 LDSGCSNH-MTGNRDLFINLDESLKKEVRTGDDKRLEVIGSGEVSVSI--KGRTRKIP--NVFYVKGLKHNLLSVGQLINKGYTILFQKDRCIIKDAESEVIGEIRMTSNKMFPLHLDSDINFAMTMTTKDTSILWHKRYGHVNVDTLINMENKGLVFGLPKIMKQESLCEGCISGKQTKKTFPRKAMWQASKPLQLVHSDICGPMRTESIGGCRYFITFIDDYTRKSWVYFLKYKSEALNYFKRFKALNEKQSDHLIKTLRSDRGGEYCSNAFQEYLKVNCIRHQLTNSYSPQQNGVAERKNRTLMELSRSMMNAKELPNCYWAEAVACATYILNRTVTKTRPNITPYEAWNGNKPNVEHLKVFGCLAYVHIPKQRRDKLDKKTEKTVFVGYSENSKGYKLYNPQSNKI 708          
BLAST of mRNA_H-paniculata_contig34528.9211.1 vs. uniprot
Match: A0A4Y1QWW3_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1QWW3_PRUDU)

HSP 1 Score: 224 bits (572), Expect = 3.360e-62
Identity = 144/407 (35.38%), Postives = 219/407 (53.81%), Query Frame = 1
Query:   31 LTAQRDLFQNVPQVVRSPIATAGKGEL-GVEGQGVVEGSIWTAERARRIIFCSVFHVPEALDSILSVERMVSQGMEANFDSERRQLYC-------NGITIPFEHTSRKEYSLRMINTEK---RQHVVDTKLL-HERLGHV--RDLPTVARQQGI----RLSGKLGVCSVYEKGKTSKQPVNRYREERTTEPLELVHTDIAGPV-VKSFGECRFAIIFVDDYSRMRKVCTLRQKSEALWALKQFERDVARAKGL*IKRLWSDQGGEYTGKAFR*FCAENGIKQEFSAAYTPHQDGVAERSWRSIFNMARATMITVNMGHRYWAEAVRSAVYCLNRAPTRPHNGGTPYEKWHGKTVK*DNLRVFGCTAYVMFQSQQRRKLDDKV*AGVFLGYDEDSPSYRIYNPENKSI 1194
            +T  +  F  + + V S +   G G+L  VEG+G++  S+ T     ++++  V +VP    ++LSV +++ +G    F+ +    YC       N +    + T+ K + L M + E        VD  LL H R GH+  R L  + ++  +     +  +  +C     GK  + P ++    R   PLELVH DI GP    SF   R+ I+FVDD+SRM  V  L QKSEA    KQF+       G  +K L +D+GGE+T   F  +C  NGIK+E +A YTP Q+GVAER  R+I  MAR+ +   ++ + +WAEA+ +AV+ LNR+PT+     TP+E WH    K D  ++FGCTAY    SQ+R K D+K    +F+GY + S +YR+ +P  KS+
Sbjct:    1 MTGNKQCFVKLEEKVNSQVKL-GDGKLHNVEGKGII--SVQTKGGIPKLVY-DVLYVPNLAQNLLSVGQLLQRGFLVKFEDD----YCVISDKKNNTLVAKIKMTANKVFPLLMTSKENLALEAEKVDGSLLWHLRYGHLNQRSLQLLHQKSMVVGLPSIHSEKEICEGCIFGKFHRLPFSQ-SSWRAKAPLELVHADICGPTRTPSFNNKRYFILFVDDFSRMMWVYFLEQKSEAFSVFKQFKAFGENQSGHNLKVLRTDRGGEFTSNEFSEYCKSNGIKRELTARYTPQQNGVAERRNRTIVEMARSMLKAKSLPNTFWAEAIHTAVFILNRSPTKAVKDKTPFEAWHRFKPKVDFFKIFGCTAYAHIPSQKREKFDEKGEKYIFVGYSDQSKAYRLIDPRTKSL 398          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34528.9211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J5GP83_ZINOF4.950e-6535.44Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J5F3N7_ZINOF2.120e-6435.44Integrase catalytic domain-containing protein n=1 ... [more]
A0A2H9ZU53_9ASPA2.640e-6434.74Retrovirus-related Pol polyprotein from transposon... [more]
A0A2Z7BCE9_9LAMI3.520e-6433.25Retrovirus-related Pol polyprotein from transposon... [more]
A0A151T355_CAJCA3.560e-6435.75Retrovirus-related Pol polyprotein from transposon... [more]
A0A151R9Q4_CAJCA4.540e-6433.10Retrovirus-related Pol polyprotein from transposon... [more]
A0A251SKN6_HELAN2.120e-6335.85Putative zinc finger, CCHC-type n=1 Tax=Helianthus... [more]
A0A6D2IM54_9BRAS1.170e-6232.95Uncharacterized protein n=2 Tax=Microthlaspi errat... [more]
A0A251UIF2_HELAN3.040e-6235.61Integrase catalytic domain-containing protein n=1 ... [more]
A0A4Y1QWW3_PRUDU3.360e-6235.38Transposable element protein n=1 Tax=Prunus dulcis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34528contigH-paniculata_contig34528:510..1799 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score73.2
Seed ortholog evalue1.3e-10
Seed eggNOG ortholog28532.XP_010520710.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs37SNQ@33090,3GHRQ@35493,3HVU8@3699,COG2801@1,KOG0017@2759,KOG1334@1,KOG1334@2759
COG Functional cat.L
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
Exons2
Model size1194
Cds size501
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34528.9211.1prot_H-paniculata_contig34528.9211.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34528 969..1565 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930065.4102385-UTR-H-paniculata_contig34528:509..9681622930065.4102385-UTR-H-paniculata_contig34528:509..968Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34528 510..968 -
1691481132.5030577-UTR-H-paniculata_contig34528:509..9681691481132.5030577-UTR-H-paniculata_contig34528:509..968Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34528 510..968 -
1622930065.460042-UTR-H-paniculata_contig34528:1565..17991622930065.460042-UTR-H-paniculata_contig34528:1565..1799Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34528 1566..1799 -
1691481132.5428724-UTR-H-paniculata_contig34528:1565..17991691481132.5428724-UTR-H-paniculata_contig34528:1565..1799Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34528 1566..1799 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930065.4259286-CDS-H-paniculata_contig34528:968..13521622930065.4259286-CDS-H-paniculata_contig34528:968..1352Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34528 969..1352 -
1691481132.5144994-CDS-H-paniculata_contig34528:968..13521691481132.5144994-CDS-H-paniculata_contig34528:968..1352Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34528 969..1352 -
1622930065.4381242-CDS-H-paniculata_contig34528:1448..15651622930065.4381242-CDS-H-paniculata_contig34528:1448..1565Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34528 1449..1565 -
1691481132.525318-CDS-H-paniculata_contig34528:1448..15651691481132.525318-CDS-H-paniculata_contig34528:1448..1565Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34528 1449..1565 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34528.9211.1

>prot_H-paniculata_contig34528.9211.1 ID=prot_H-paniculata_contig34528.9211.1|Name=mRNA_H-paniculata_contig34528.9211.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=167bp
MVSQGMEANFDSERRQLYCNGITIPFEHTSRKEYSLRMINTEKRQHVVDT
KLLHERLGHVRDLPTVARQQGIRLSGKLGVCSVYEKGKTSKQPVNRYREE
RTTEPLELVHTDIAGPVVKSFGECRFAIIFVDDYSRMRKVCTLRQKSEAL
WALKQFERDVARAKGL*
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mRNA from alignment at H-paniculata_contig34528:510..1799-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34528.9211.1 ID=mRNA_H-paniculata_contig34528.9211.1|Name=mRNA_H-paniculata_contig34528.9211.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1290bp|location=Sequence derived from alignment at H-paniculata_contig34528:510..1799- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATAATTGAGTCGGGCTGCACCGGACATGACCTGACCGCGCAACGCGACCT CTTCCAAAATGTTCCTCAGGTCGTACGTAGTCCCATTGCCACAGCGGGCA AGGGGGAGTTGGGTGTAGAGGGGCAAGGAGTCGTAGAAGGTTCCATTTGG ACCGCGGAAAGAGCCAGGCGCATCATATTCTGCAGTGTATTTCATGTACC TGAAGCATTAGACAGTATTTTATCGGTTGAGCGGATGGTGAGTCAAGGGA TGGAGGCGAATTTTGATTCGGAACGGAGACAGCTGTATTGTAATGGGATA ACGATCCCGTTCGAACACACATCGCGGAAGGAGTATTCATTGCGTATGAT AGTGGGGGACGAAGTAGAGATACAGGCCGCAAAACGGGCCATCGGATAAC AAGTGAAGGTTCTTCGACTATACAGCAACGACTGCACCACCCCGAAGAAC ACTGAGAAGAGGCAACACGTGGTGGACACCAAGTTACTACACGAGCGACT TGGCCATGTTCGAGATCTTCCCACAGTCGCGCGGCAACAAGGCATAAGGT TAAGCGGGAAGCTCGGTGTCTGCTCGGTGTATGAGAAGGGGAAAACATCG AAGCAGCCTGTAAACCGTTATCGAGAAGAGCGGACGACTGAGCCGTTGGA ACTGGTGCACACCGACATAGCCGGACCGGTGGTCAAGTCCTTCGGAGAAT GTCGCTTCGCCATCATCTTCGTCGACGACTACAGCAGAATGCGCAAAGTC TGTACCCTGCGACAAAAGTCGGAGGCGCTATGGGCCCTGAAGCAATTCGA GAGGGACGTAGCGAGGGCAAAGGGTTTGTAGATTAAGCGCCTTTGGTCGG ATCAGGGAGGAGAATATACTGGGAAGGCTTTTAGGTAATTCTGCGCGGAA AATGGCATCAAGCAGGAGTTCTCTGCCGCCTACACACCGCACCAAGACGG TGTCGCGGAGCGCAGCTGGCGCAGCATTTTCAATATGGCAAGAGCCACCA TGATCACCGTCAACATGGGTCATCGATATTGGGCGGAAGCGGTGCGCTCG GCAGTGTACTGCCTAAATCGCGCCCCGACGCGACCGCACAACGGAGGAAC GCCGTACGAAAAATGGCACGGCAAGACAGTAAAGTAGGACAACCTTCGCG TCTTTGGCTGCACGGCGTATGTTATGTTCCAGTCGCAACAGAGACGTAAG CTCGACGACAAAGTATAGGCGGGGGTGTTTCTGGGGTACGACGAGGACAG CCCGAGTTATCGCATATATAACCCGGAAAACAAGAGCATC
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Coding sequence (CDS) from alignment at H-paniculata_contig34528:510..1799-

>mRNA_H-paniculata_contig34528.9211.1 ID=mRNA_H-paniculata_contig34528.9211.1|Name=mRNA_H-paniculata_contig34528.9211.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1002bp|location=Sequence derived from alignment at H-paniculata_contig34528:510..1799- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGAGTCAAGGGATGGAGGCGAATTTTGATTCGGAACGGAGACAGCT
GTATTGTAATGGGATAACGATCCCGTTCGAACACACATCGCGGAAGGAGT
ATTCATTGCGTATGATAATGGTGAGTCAAGGGATGGAGGCGAATTTTGAT
TCGGAACGGAGACAGCTGTATTGTAATGGGATAACGATCCCGTTCGAACA
CACATCGCGGAAGGAGTATTCATTGCGTATGATAAACACTGAGAAGAGGC
AACACGTGGTGGACACCAAGTTACTACACGAGCGACTTGGCCATGTTCGA
GATCTTCCCACAGTCGCGCGGCAACAAGGCATAAGGTTAAGCGGGAAGCT
CGGTGTCTGCTCGGTGTATGAGAAGGGGAAAACATCGAAGCAGCCTGTAA
ACCGTTATCGAGAAGAGCGGACGACTGAGCCGTTGGAACTGGTGCACACC
GACATAGCCGGACCGGTGGTCAAGTCCTTCGGAGAATGTCGCTTCGCCAT
CATCTTCGTCGACGACTACAGCAGAATGCGCAAAGTCTGTACCCTGCGAC
AAAAGTCGGAGGCGCTATGGGCCCTGAAGCAATTCGAGAGGGACGTAGCG
AGGGCAAAGGGTTTGTAGAACACTGAGAAGAGGCAACACGTGGTGGACAC
CAAGTTACTACACGAGCGACTTGGCCATGTTCGAGATCTTCCCACAGTCG
CGCGGCAACAAGGCATAAGGTTAAGCGGGAAGCTCGGTGTCTGCTCGGTG
TATGAGAAGGGGAAAACATCGAAGCAGCCTGTAAACCGTTATCGAGAAGA
GCGGACGACTGAGCCGTTGGAACTGGTGCACACCGACATAGCCGGACCGG
TGGTCAAGTCCTTCGGAGAATGTCGCTTCGCCATCATCTTCGTCGACGAC
TACAGCAGAATGCGCAAAGTCTGTACCCTGCGACAAAAGTCGGAGGCGCT
ATGGGCCCTGAAGCAATTCGAGAGGGACGTAGCGAGGGCAAAGGGTTTGT
AG
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