mRNA_H-paniculata_contig34496.9199.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34496.9199.1
Unique NamemRNA_H-paniculata_contig34496.9199.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig34496.9199.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 219 bits (558), Expect = 2.820e-57
Identity = 124/336 (36.90%), Postives = 190/336 (56.55%), Query Frame = -1
Query:  449 LGGVHAGDSPAASPARFFAWDQNSLGMTGPLDRYTVVEFKQRYETVIQVKHGLQRHLAQLSLHCTDLFHHEVSRHRA--PGAETPLSLRRAVKLNHVFPVLLLSTDAQFSRRDRFLAVKRGGISVVLPWLMASTEAAAARRQWTARSTSTVDRYRKAAAACRHKGGISNTVRALLSDELEPANEDTFGKVSPKFGQEDAPALAAAKAAALAASLDFLAADGAAAWRPDDEYNPETLIAVVKSKNALSAAGNDGLRFSHLQCILNTLGGMEGFRPVVGPFWRRSME*PDAFPPEFWECFLQKTSRRSGRSAARYAWDLRCGVLWLLRWSGNTSRNWR 1450
            +GG+    S A      + W+QNS G+   LD  T+ +   R+ETV ++K  L    A+L  H  +L + E++  R   P + TPLSL RA+KL ++ P LL S D + +R++R+ A+KRG IS  LPWLM   +AA++R +   +  +  D++++A  ACRH GG+ +  RALL++   P N++T+ ++  KF  ED+ A+  A A A+A S+       A  WRP++E++P+ LI V+ S+++ S AGNDG RFSHL+ I NT  G E F   +   WRR +  P+ FPPEFW  + Q +    G            G+ W    +  T R W+
Sbjct:  311 VGGMSEESSEAGM---LYGWNQNSPGVGPALDEVTMEDLTLRFETVKKIKPWLASDHARLQTHALNLVNKELAERRELPPRSGTPLSLLRAIKLWYLLPALLHSFDGRITRKERYKALKRGDISSTLPWLMEYAKAASSRSRGPVQEETQEDKFKRAEQACRHSGGVKDAARALLAEPRSPGNDETWERLKAKFPLEDSAAVEQAVADAIAESITEEENGSAPRWRPEEEFDPQVLIEVINSRSSNSGAGNDGQRFSHLKSITNTKIGREDFCGAMSSLWRRLVNDPNTFPPEFWTLWKQSSLIALGEKCRPVC----IGMTWRRLIAAGTVRQWK 639          
BLAST of mRNA_H-paniculata_contig34496.9199.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 218 bits (555), Expect = 4.950e-57
Identity = 130/364 (35.71%), Postives = 201/364 (55.22%), Query Frame = -1
Query:  449 GCGARYDGQPVLEYVVQEDPSSREKVELGGVHAGDSP-AASPARFFAWDQNSLGMTGPLDRYTVVEFKQRYETVIQVKHGLQRHLAQLSLHCTDLFHHEVSRHRAPGAET--PLSLRRAVKLNHVFPVLLLSTDAQFSRRDRFLAVKRGGISVVLPWLMASTEAAAARRQWTARSTSTVDRYRKAAAACRHKGGISNTVRALLSDELEPANEDTFGKVSPKFGQEDAPALAAAKAAALAASLDFLAADGAAAWRPDDEYNPETLIAVVKSKNALSAAGNDGLRFSHLQCILNTLGGMEGFRPVVGPFWRRSME*PDAFPPEFWECFLQKTSRRSGRSAARYAWDLRCGVLWLLRWSGNTSRNWR 1531
            GCGA++  +  LE  VQ DP  + + E       D P  A P   + W+Q+S G+   LD  ++ +   R++TV +V+       A+L  H   L + +++      + T  PLS  R +KL ++ P +L S D + +R+ R+ ++KRG IS VLPWL+  T+AA+AR +  AR  +  D++++AA ACRH GG+ +  RALL+D+  P N++T+ ++  KF  ED   +  A A A+AAS        A  WRP+ E++P+ L+ V+ S+++ S AGNDG RFSHL+ I+NT  G E F   +   WRR +  P+AFPPEFW  + Q +    G            G+ W    +  T R W+
Sbjct:  112 GCGAQHSRRDSLEAAVQADPGLQLRAERLIRGLNDEPHGARP--LYIWNQDSPGIGPALDDVSMDDLSLRFQTVKKVQPRFASDHARLQTHVLHLVNKQLAEGGGASSATGTPLSTIRVIKLWYLLPGILHSFDGRIARKKRYNSLKRGDISSVLPWLIEYTKAASARSRGPAREDTPDDKFKRAARACRHSGGVKDAARALLADQPSPGNDETWARLKAKFPHEDPVQVEQAIAEAIAASRTEEEEGSAPRWRPETEFDPQVLLQVINSRSSNSGAGNDGQRFSHLKSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVC----IGMTWRRLIAAGTVREWK 469          
BLAST of mRNA_H-paniculata_contig34496.9199.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 2.620e-55
Identity = 126/363 (34.71%), Postives = 196/363 (53.99%), Query Frame = -1
Query:  449 GCGARYDGQPVLEYVVQEDPSSREKVELGGVHAGDSPAASPARFFAWDQNSLGMTGPLDRYTVVEFKQRYETVIQVKHGLQRHLAQLSLHCTDLFHHEVSRHRAPGAET--PLSLRRAVKLNHVFPVLLLSTDAQFSRRDRFLAVKRGGISVVLPWLMASTEAAAARRQWTARSTSTVDRYRKAAAACRHKGGISNTVRALLSDELEPANEDTFGKVSPKFGQEDAPALAAAKAAALAASLDFLAADGAAAWRPDDEYNPETLIAVVKSKNALSAAGNDGLRFSHLQCILNTLGGMEGFRPVVGPFWRRSME*PDAFPPEFWECFLQKTSRRSGRSAARYAWDLRCGVLWLLRWSGNTSRNWR 1531
            GCGA++  +  LE  VQ DP  + + E       D P  + +  + W+Q+S G+   LD  ++ +   R++TV +V+       A+L  H   L + +++      + T  PLS  R +KL ++ P +L   D + +R+ R+ ++KR  IS VLPWL+  T+AA+AR +  AR     D++++AA ACRH GG+ +  RALL+D+  P N++T+ ++  KF  ED   +  A A A+AAS        A  WRP+ E++P+ L+ VV  +++ S AGNDG RFSHL+ I+NT  G E F   +   WRR ++ P AFPPEFW    Q +    G            G+ W    +  T R W+
Sbjct:  111 GCGAQHSRRDSLEAAVQADPGLQLRAESLIRGLNDEPHGARS-LYIWNQDSPGIGPALDDVSMDDLSLRFQTVKKVQPRFASDHARLQTHVLHLVNKQLAEGGGASSATGTPLSTIRVIKLWYLLPGILHFFDGRIARKHRYKSLKREDISSVLPWLIEYTKAASARSRGPAREDRPDDKFKRAAQACRHSGGVKDAARALLADQPSPGNDETWARLKAKFPHEDPVQVEQAIAEAIAASRTEEEEGSAPRWRPETEFDPQVLLQVVNRRSSNSGAGNDGPRFSHLKSIVNTKIGREEFSNAMSSLWRRLIKDPHAFPPEFWTLLKQSSLIALGEKCRPVC----IGMTWRRLIAAGTVREWK 468          
BLAST of mRNA_H-paniculata_contig34496.9199.1 vs. uniprot
Match: A0A6H5KA96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA96_9PHAE)

HSP 1 Score: 207 bits (526), Expect = 5.660e-54
Identity = 126/364 (34.62%), Postives = 195/364 (53.57%), Query Frame = -1
Query:  449 GCGARYDGQPVLEYVVQEDPSSREKVELGGVHAGDSP-AASPARFFAWDQNSLGMTGPLDRYTVVEFKQRYETVIQVKHGLQRHLAQLSLHCTDLFHHEVSRHRAPGAET--PLSLRRAVKLNHVFPVLLLSTDAQFSRRDRFLAVKRGGISVVLPWLMASTEAAAARRQWTARSTSTVDRYRKAAAACRHKGGISNTVRALLSDELEPANEDTFGKVSPKFGQEDAPALAAAKAAALAASLDFLAADGAAAWRPDDEYNPETLIAVVKSKNALSAAGNDGLRFSHLQCILNTLGGMEGFRPVVGPFWRRSME*PDAFPPEFWECFLQKTSRRSGRSAARYAWDLRCGVLWLLRWSGNTSRNWR 1531
            GC A++  +  LE  VQ DP  + + E       D P  A P   + W+Q+S G+   LD  ++ +   R++TV +V+       A+L  H   L + +++      + T  PLS  R +KL ++ P +L S D + +R+ R+   KRG IS  LPWL+  T+AA+AR +  AR  +  D++++AA ACRH GG+ +  RALL+D+  P N++T+ ++  KF +ED   +  A A A+AAS        A  WRP+ E++P  L+ V+ S+++   AGNDG RFSHL+ I+NT  G E F   +   WRR +  P+AFPPEFW  +   +    G            G+ W    +  T R W+
Sbjct:  119 GCEAQHSRRDSLEAAVQADPGLQLRAERLIRGLNDEPHGARP--LYIWNQDSPGIGPALDDVSMDDLSLRFQTVKKVQPRFASDHARLQTHVLHLVNKQLAEGGGASSATGTPLSTIRVIKLWYLLPGILHSFDGRIARKKRYNWFKRGDISSALPWLIEYTKAASARSRGPAREDTPDDKFKRAARACRHSGGVKDAARALLADQPSPGNDETWARLKAKFTREDPVQVEQANAEAIAASRTEEEEGSAPRWRPETEFDPRVLLQVINSRSSNFGAGNDGRRFSHLKSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKLSSLIALGEKCRPVC----IGMTWRRLIAAGTVREWK 476          
BLAST of mRNA_H-paniculata_contig34496.9199.1 vs. uniprot
Match: A0A6H5JJ20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ20_9PHAE)

HSP 1 Score: 198 bits (503), Expect = 1.240e-53
Identity = 117/339 (34.51%), Postives = 183/339 (53.98%), Query Frame = -1
Query:  515 GCGARYDGQPVLEYVVQEDPSSREKVELGGVHAGDSPAASPARFFAWDQNSLGMTGPLDRYTVVEFKQRYETVIQVKHGLQRHLAQLSLHCTDLFHHEVSRHRAPGAETPLSLRRAVKLNHVFPVLLLSTDAQFSRRDRFLAVKRGGISVVLPWLMASTEAAAARRQWTARSTSTVDRYRKAAAACRHKGGISNTVRALLSDELEPANEDTFGKVSPKFGQEDAPALAAAKAAALAASLDFLAADGAAAWRPDDEYNPETLIAVVKSKNALSAAGNDGLRFSHLQCILNTLGGMEGFRPVVGPFWRRSME*PDAFPPEFWECFLQKTSRRSGRSAARYA 1531
            GCGA++  +  LE  VQ DP  + + E       D P  + +  + W+Q+S G+   LD  ++ +    ++T+ +                            +    TPLS  R +KL ++ P +L S D + +R+ R+ ++KRG IS VLPWL+  T+AA+AR +  A   +  D+++ AA ACRH GG+ +   ALL+D+  P N++T+ ++  KF  ED   +  A A A+AAS        A  WRP+ E++P+ L+ V+ S+++ S AGNDG RFSHL+ I+NT  G E F   +   WRR +  P+AFPPEFW  + Q +    G+SA + A
Sbjct:  112 GCGAQHSRRDSLEAAVQADPGLQLRAERLIRGLNDEPHGARS-LYIWNQDSPGIGPALDDVSMDDLTLGFQTLAEGGGA------------------------SSATGTPLSTIRVIKLWYLLPGILHSFDGRIARKKRYNSLKRGDISSVLPWLIEYTKAASARSRGPAPEDTPDDKFKTAAQACRHSGGVKDAAGALLADQPSPGNDETWARLKAKFPHEDPVQVEQAIAEAIAASRTEEEEGSAPRWRPETEFDPQVLLQVINSRSSNSGAGNDGQRFSHLKSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGKSAVQCA 425          
BLAST of mRNA_H-paniculata_contig34496.9199.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE)

HSP 1 Score: 194 bits (492), Expect = 3.300e-49
Identity = 113/310 (36.45%), Postives = 175/310 (56.45%), Query Frame = -1
Query:  449 TGP-LDRYTVVEFKQRYETVIQVKHGLQRHLAQLSLHCTDLFHHEVSRHRAPGAET--PLSLRRAVKLNHVFPVLLLSTDAQFSRRDRFLAVKRGGISVVLPWLMASTEAAAARRQWTARSTSTVDRYRKAAAACRHKGGISNTVRALLSDELEPANEDTFGKVSPKFGQEDAPALAAAKAAALAASLDFLAADGAAAWRPDDEYNPETLIAVVKSKNALSAAGNDGLRFSHLQCILNTLGGMEGFRPVVGPFWRRSME*PDAFPPEFWECFLQKTSRRSGRSAARYAWDLRCGVLWLLRWSGNTSRNWR 1369
            +GP LD  ++ +   R++TV +V+       A L  H   L + +++      + T  PLS  R +KL ++ P +L S D + +R+ R+ ++KRG IS VLPWL+  T+AA+AR + +AR  +  D++++AA ACRH GG+ +  RALL+D+  P N++T+ ++  KF  ED   +  A A A AAS        A  WRP+ E++P+ L+ V+ S+++ S AGNDG RFSHL+ I+NT  G E F   +   WRR +  P+AFPPEFW  + Q +    G            G+ W    +  T R W+
Sbjct:  185 SGPALDDVSMDDLSLRFQTVKKVQPRFASDHACLQTHVLHLVNKQLAEGGGASSATGTPLSTIRVIKLWYLLPGILHSFDGRIARKKRYNSLKRGDISSVLPWLIECTKAASARSRGSAREDTPDDKFKRAAQACRHSGGVKDAARALLADQPSPGNDETWARLKAKFPHEDPVQVEQAIAEAKAASRTEEEEGSAPRWRPETEFDPQVLLQVINSRSSNSGAGNDGQRFSHLKSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVC----IGMTWRRLIAAGTVREWK 490          
BLAST of mRNA_H-paniculata_contig34496.9199.1 vs. uniprot
Match: A0A6H5JGW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGW0_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 6.440e-49
Identity = 107/294 (36.39%), Postives = 166/294 (56.46%), Query Frame = -1
Query:  449 YETVIQVKHGLQRHLAQLSLHCTDLFHHEVSRHRAPGAET--PLSLRRAVKLNHVFPVLLLSTDAQFSRRDRFLAVKRGGISVVLPWLMASTEAAAARRQWTARSTSTVDRYRKAAAACRHKGGISNTVRALLSDELEPANEDTFGKVSPKFGQEDAPALAAAKAAALAASLDFLAADGAAAWRPDDEYNPETLIAVVKSKNALSAAGNDGLRFSHLQCILNTLGGMEGFRPVVGPFWRRSME*PDAFPPEFWECFLQKTSRRSGRSAARYAWDLRCGVLWLLRWSGNTSRNWR 1324
            ++TV +V+       A+L  H   L + +++      + T  PLS  R +K  ++ P +L S D + +R+ R+ ++KRG IS VLPWL+  T+AA+AR +  AR  +  D++++AA ACRH GG+ +  RALL+D+  P N++T+ ++  KF  ED   +  A A A+AAS        A  WRP+ E++P+ L+ V+ S+++ S AGNDG RFSHL+ I+NT  G E F   +   WRR +  P+AFPPEFW  + Q +    G            G+ W    +  T R W+
Sbjct:  250 FQTVKKVQPRFASDHARLQTHVLHLVNKQLAEGGGASSATGAPLSTIRVIKRWYLLPGILHSFDGRIARKKRYNSLKRGDISSVLPWLIEYTKAASARSRGPAREDTPDDKFKRAARACRHSGGVKDAARALLADQPSPGNDETWARLKAKFPHEDPVQVEQAIAEAIAASRTEEEEGSAPRWRPETEFDPQVLLQVINSRSSNSGAGNDGQRFSHLKSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVC----IGMTWRRLIAAGTVREWK 539          
BLAST of mRNA_H-paniculata_contig34496.9199.1 vs. uniprot
Match: A0A6H5KJC0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJC0_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 4.560e-45
Identity = 121/365 (33.15%), Postives = 184/365 (50.41%), Query Frame = -1
Query:  449 GCGARYDGQPVLEYVVQEDPSSREKVELGGVHAGDSP-AASPARFFAWDQNSLGMTGPLDRYTVVEFKQRYETVIQVKHGLQRHLAQLSLHCTDLFHHEVSRHRAPGAET--PLSLRRAVKLNHVFPVLLLSTDAQFSRRDRFLAVKRGGISVVLPWLMASTEAAAARRQWTARSTSTVDRYRKAAAACRHKGGISNTVRALLSDELEPANEDTFGKVSPKFGQEDAPALAAAKAAALAASLDFLAADGAAAWRPDDEYNPETLIAVVKSKNALSAAGNDGLRFSHLQC-ILNTLGGMEGFRPVVGPFWRRSME*PDAFPPEFWECFLQKTSRRSGRSAARYAWDLRCGVLWLLRWSGNTSRNWR 1531
            GCG ++  +  LE  VQ DP  + + E       D P  A P   + W+Q+S G+   LD  ++ +   R++TV +V+       A+L  H   L + +++      + T  PLS  R +KL ++ P                     G IS VLPWL+  T+AA+AR +  AR  +  D++++AA ACRH GG+ +  RALL+D+  P N++T+ ++  KF  ED   +  A A A+AAS        A  WRP+ E++P+ L+ V+ S+++ S AGNDG  FSHL   I+NT  G E F   +   WRR +  P+AFPPEFW  + Q +    G            G+ W    +  T R W+
Sbjct:  103 GCGDQHSRRDSLEAAVQADPGLQLRAERLIRGLNDEPHGARP--LYIWNQDSPGIGPALDDVSMDDLSLRFQTVKKVQPRFASDHARLQTHVLHLVNKQLAEGGGASSATGTPLSTIRVIKLWYLLP---------------------GVISSVLPWLIEYTKAASARSRGPAREDTPDDKFKRAARACRHSGGVKDAARALLADQPSPGNDETWARLKAKFPHEDPVQVEQAIAEAIAASRTEEEEGSAPRWRPETEFDPQVLLQVINSRSSNSGAGNDGQCFSHLNXSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVC----IGMTWRRLIAAGTVREWK 440          
BLAST of mRNA_H-paniculata_contig34496.9199.1 vs. uniprot
Match: A0A6H5KQQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQQ8_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 5.510e-41
Identity = 101/288 (35.07%), Postives = 159/288 (55.21%), Query Frame = -1
Query:  641 LEYVVQEDPSSREKVELGGVHAGDSPAASPARFFAWDQNSLGMTGPLDRYTVVEFKQRYETVIQVKHGLQRHLAQLSLHCTDLFHHEVSRHRAPGAET--PLSLRRAVKLNHVFPVLLLSTDAQFSRRDRFLAVKRGGISVVLPWLMASTEAAAARRQWTARSTSTVDRYRKAAAACRHKGGISNTVRALLSDELEPANEDTFGKVSPKFGQEDAPALAAAKAAALAASLDFLAADGAAAWRPDDEYNPETLIAVVKSKNALSAAGNDGLRFSHLQCILNTLGGMEGF 1498
            LE  VQ DP  + + E       D P  + +  + W+Q+S G+   LD   +     R++TV +V+       A+L  H   L + +++      + T  PLS  R + L ++ P +L S D + +R+ R  ++KRG IS  LPWL+  T+AA+AR +  AR  +  D++++AA ACRH GG+ +  RAL +D+    N++T+  +  +F  ED   +  A A A+AAS        A  WRP+ E+ P+ L+ V+ S+++ S AGNDG RFSHL+ I+NT  G E F
Sbjct:  108 LEAAVQADPGLQLRAERLIRGLNDEPHGARS-LYIWNQDSPGIGPALDDVRMDALTFRFQTVKKVQPRYASDHARLQTHVLHLVNKQLAEGGGASSATGTPLSTIRVITLWYLLPGILHSFDGRIARKKRHKSLKRGDISSALPWLIEYTKAASARSRGPAREDTPDDKFKRAAQACRHSGGVKDAARALFADQPSLGNDETWACLKAEFPHEDPVQVEQAVAEAIAASRTEEEGGSAPRWRPETEFAPQVLLQVINSRSSNSGAGNDGQRFSHLKSIVNTKIGREEF 394          
BLAST of mRNA_H-paniculata_contig34496.9199.1 vs. uniprot
Match: A0A6H5KAK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK8_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 6.870e-41
Identity = 111/361 (30.75%), Postives = 171/361 (47.37%), Query Frame = -1
Query:  449 GCGARYDGQPVLEYVVQEDPSSREKVELGGVHAGDSPAASPARFFAWDQNSLGMTGPLDRYTVVEFKQRYETVIQVKHGLQRHLAQLSLHCTDLFHHEVSRHRAPGAETPLSLRRAVKLNHVFPVLLLSTDAQFSRRDRFLAVKRGGISVVLPWLMASTEAAAARRQWTARSTSTVDRYRKAAAACRHKGGISNTVRALLSDELEPANEDTFGKVSPKFGQEDAPALAAAKAAALAASLDFLAADGAAAWRPDDEYNPETLIAVVKSKNALSAAGNDGLRFSHLQCILNTLGGMEGFRPVVGPFWRRSME*PDAFPPEFWECFLQKTSRRSGRSAARYAWDLRCGVLWLLRWSGNTSRNWR 1531
            GCGA++  +  LE  VQ +P  + + E       D P  + +  + W+Q+SLG+   LD  ++ +   R++T                                 G   PLS   +      + V     D + +R+ RF    RG IS VLPWL+  T+AA+AR +  AR  +  D++++AA ACRH GG+ +   A L+D+  P N++T+ ++  KF  ED   +  A A A+ AS        A  WRP+ E++P+  + V+  +++ S A NDG RFSHL  I+NT  G E F   +   WRR +  P+AFPPEFW  + Q +    G            G+ W    +  T R W+
Sbjct:  103 GCGAQHSRKDSLEVAVQANPVLQLRAERLIRGLNDEPHGARS-LYIWNQDSLGIGPALDNISMDDLTLRFQT---------------------------------GPHFPLS--GSSNFGTSYQVFCTPFDGRIARKKRF----RGDISSVLPWLIEYTKAASARSRGPAREDTPDDKFKRAAQACRHSGGVKDAASAPLADQPSPGNDETWARLKAKFPHEDPVQVEQAIAEAITASRTEEEEGSAPRWRPETEFDPQVFLQVINRRSSNSGADNDGQRFSHLTSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVC----IGMTWRRLIAAGTVREWK 419          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34496.9199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5JH58_9PHAE2.820e-5736.90Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KMQ2_9PHAE4.950e-5735.71Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KKQ2_9PHAE2.620e-5534.71Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KA96_9PHAE5.660e-5434.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJ20_9PHAE1.240e-5334.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JI32_9PHAE3.300e-4936.45Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JGW0_9PHAE6.440e-4936.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJC0_9PHAE4.560e-4533.15Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KQQ8_9PHAE5.510e-4135.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAK8_9PHAE6.870e-4130.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34496contigH-paniculata_contig34496:123..1914 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1792
Cds size981
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34496.9199.1prot_H-paniculata_contig34496.9199.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34496 494..1474 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930063.7577064-UTR-H-paniculata_contig34496:122..4931622930063.7577064-UTR-H-paniculata_contig34496:122..493Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34496 123..493 +
1691481131.841036-UTR-H-paniculata_contig34496:122..4931691481131.841036-UTR-H-paniculata_contig34496:122..493Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34496 123..493 +
1622930063.8003707-UTR-H-paniculata_contig34496:1474..19141622930063.8003707-UTR-H-paniculata_contig34496:1474..1914Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34496 1475..1914 +
1691481131.876742-UTR-H-paniculata_contig34496:1474..19141691481131.876742-UTR-H-paniculata_contig34496:1474..1914Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34496 1475..1914 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930063.777659-CDS-H-paniculata_contig34496:493..14741622930063.777659-CDS-H-paniculata_contig34496:493..1474Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34496 494..1474 +
1691481131.8623998-CDS-H-paniculata_contig34496:493..14741691481131.8623998-CDS-H-paniculata_contig34496:493..1474Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34496 494..1474 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34496.9199.1

>prot_H-paniculata_contig34496.9199.1 ID=prot_H-paniculata_contig34496.9199.1|Name=mRNA_H-paniculata_contig34496.9199.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=327bp
MEHDGAAKLRAARDRYPVLPLRQVNLLQFRLVLPDHLSSQSTPHRRSHAY
RAALLPERREVFWRKHSQNSGGKASGYSMERRQKGPTTGRKPSIPPKVFR
MHCRWEKRRPSLPAADRAFFDLTTAISVSGLYSSSGLQAAAPSAARKSRL
AAKAAAFAAASAGASSWPNFGLTLPKVSSLAGSSSSDNNALTVLEIPPLC
LHAAAAFLYRSTVDVLLAVHWRRAAAASVDAMSHGSTTLMPPLFTARNLS
LLENCASVDRSSTGKTWLSFTARRKDSGVSAPGARCRLTSWWKRSVQCKE
SCARWRWRPCFTWMTVSYRCLNSTTV*
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mRNA from alignment at H-paniculata_contig34496:123..1914+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34496.9199.1 ID=mRNA_H-paniculata_contig34496.9199.1|Name=mRNA_H-paniculata_contig34496.9199.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1792bp|location=Sequence derived from alignment at H-paniculata_contig34496:123..1914+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTATTATTACTATTACTATTCTTCTTCTTCTTCTTCTTCTTCTTCTTACT ACTATTACAAATATTTCTATTATTGCCTTCTGACAGTTGCAGACTCAGAG CTGGCTTTCGGAATTTTCCAAAGTTAGCTCACAAAGTGAGAAAAGTAAAC GGCAGGCGAAACAAGAAAAATTCAAGCCTAACAATAATCACGCATTATAC TCGAATACCCGACCTACAGAGAAACCTCTTGGGCAAAACACTCCTGTTCC TCACTTGAGCACTGTAAATACGTATCTTACGCTTACCAGGTCAAAACATT CCGTATAGCGAAATCCCTCCGCTCTCTAATAGAATAACATATGTAAAATC GAAACATGATTGAACACCGTGATGGAACACGACGGCGCCGCTAAACTCCG CGCCGCCCGAGACCGCTACCCCGTATTGCCGCTCCGACAGGTTAACCTCC TCCAGTTTCGGCTTGTATTACCTGACCACCTCAGCAGCCAAAGTACGCCG CATCGTAGATCCCACGCATATCGGGCGGCACTTCTCCCCGAGCGCCGTGA GGTTTTTTGGAGGAAACACTCCCAGAACTCCGGCGGGAAGGCGTCGGGTT ATTCCATGGAGCGCCGCCAGAAAGGCCCGACTACGGGGCGGAAACCTTCC ATACCCCCCAAAGTGTTCAGGATGCACTGCAGATGGGAGAAACGTAGACC ATCGTTACCCGCCGCGGACAGGGCGTTCTTCGACTTGACAACCGCTATCA GCGTTTCGGGGTTATACTCGTCGTCTGGCCTCCAGGCGGCAGCTCCGTCC GCGGCGAGAAAATCCAGGCTTGCCGCTAAGGCCGCTGCTTTCGCCGCTGC CAGCGCGGGCGCATCCTCCTGGCCGAATTTCGGGCTGACTTTGCCGAAGG TATCCTCGTTGGCAGGCTCGAGCTCATCCGACAATAACGCTCTCACCGTG TTAGAGATCCCCCCTTTGTGCCTGCATGCAGCTGCCGCCTTCCTGTATCG GTCCACCGTAGACGTGCTCCTCGCTGTCCACTGGCGGCGGGCCGCCGCGG CCTCCGTAGACGCCATGAGCCACGGGAGCACGACGCTAATGCCCCCTCTC TTCACTGCGAGGAATCTGTCCCTCCTAGAGAATTGTGCGTCGGTAGATAG AAGCAGCACCGGGAAAACGTGGTTGAGCTTCACTGCCCGTCGCAAGGATA GCGGCGTCTCCGCGCCCGGCGCCCGGTGCCGGCTCACTTCGTGGTGGAAG AGGTCCGTGCAGTGCAAAGAGAGTTGTGCTAGGTGGCGTTGGAGACCGTG CTTCACCTGGATGACCGTCTCGTATCGTTGTTTGAACTCGACGACGGTGT AGCGATCCAGGGGTCCCGTCATACCCAGGCTATTTTGGTCCCAGGCAAAG AAGCGTGCCGGGCTGGCTGCGGGGCTATCACCGGCGTGCACCCCGCCGAG CTCTACCTTCTCACGGCTGCTCGGGTCTTCCTGCACGACGTACTCCAGCA CTGGTTGGCCGTCATACCTCGCCCCGCACCCTGGGTACAGGCAGCAAAGC GGGGCCGGCGCCGGGGAGCGTTCCAGCATGTTAAGCGCGCACACGGTGTG CAGGACCTGAGTGCATGGCAGTCCCATAGCCCGTACCCTTCGCATCACCT CCGTCGAATAACAGGCGCAGCGAGTTCCTCGCAAGGCCAGCCTGCTTTTT CCGTGCCGTCGATGCCATTTTGTCCTCAGCCTTCCGGGGGTTAAACAAAT AATCCCTGGTAGTACTCCTGTCCTCGCCCCCATTTCCCCTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig34496:123..1914+

>mRNA_H-paniculata_contig34496.9199.1 ID=mRNA_H-paniculata_contig34496.9199.1|Name=mRNA_H-paniculata_contig34496.9199.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1962bp|location=Sequence derived from alignment at H-paniculata_contig34496:123..1914+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAACACGACGGCGCCGCTAAACTCCGCGCCGCCCGAGACCGCTACCC
CGTATTGCCGCTCCGACAGGTTAACCTCCTCCAGTTTCGGCTTGTATTAC
CTGACCACCTCAGCAGCCAAAGTACGCCGCATCGTAGATCCCACGCATAT
CGGGCGGCACTTCTCCCCGAGCGCCGTGAGGTTTTTTGGAGGAAACACTC
CCAGAACTCCGGCGGGAAGGCGTCGGGTTATTCCATGGAGCGCCGCCAGA
AAGGCCCGACTACGGGGCGGAAACCTTCCATACCCCCCAAAGTGTTCAGG
ATGCACTGCAGATGGGAGAAACGTAGACCATCGTTACCCGCCGCGGACAG
GGCGTTCTTCGACTTGACAACCGCTATCAGCGTTTCGGGGTTATACTCGT
CGTCTGGCCTCCAGGCGGCAGCTCCGTCCGCGGCGAGAAAATCCAGGCTT
GCCGCTAAGGCCGCTGCTTTCGCCGCTGCCAGCGCGGGCGCATCCTCCTG
GCCGAATTTCGGGCTGACTTTGCCGAAGGTATCCTCGTTGGCAGGCTCGA
GCTCATCCGACAATAACGCTCTCACCGTGTTAGAGATCCCCCCTTTGTGC
CTGCATGCAGCTGCCGCCTTCCTGTATCGGTCCACCGTAGACGTGCTCCT
CGCTGTCCACTGGCGGCGGGCCGCCGCGGCCTCCGTAGACGCCATGAGCC
ACGGGAGCACGACGCTAATGCCCCCTCTCTTCACTGCGAGGAATCTGTCC
CTCCTAGAGAATTGTGCGTCGGTAGATAGAAGCAGCACCGGGAAAACGTG
GTTGAGCTTCACTGCCCGTCGCAAGGATAGCGGCGTCTCCGCGCCCGGCG
CCCGGTGCCGGCTCACTTCGTGGTGGAAGAGGTCCGTGCAGTGCAAAGAG
AGTTGTGCTAGGTGGCGTTGGAGACCGTGCTTCACCTGGATGACCGTCTC
GTATCGTTGTTTGAACTCGACGACGGTGTAGATGGAACACGACGGCGCCG
CTAAACTCCGCGCCGCCCGAGACCGCTACCCCGTATTGCCGCTCCGACAG
GTTAACCTCCTCCAGTTTCGGCTTGTATTACCTGACCACCTCAGCAGCCA
AAGTACGCCGCATCGTAGATCCCACGCATATCGGGCGGCACTTCTCCCCG
AGCGCCGTGAGGTTTTTTGGAGGAAACACTCCCAGAACTCCGGCGGGAAG
GCGTCGGGTTATTCCATGGAGCGCCGCCAGAAAGGCCCGACTACGGGGCG
GAAACCTTCCATACCCCCCAAAGTGTTCAGGATGCACTGCAGATGGGAGA
AACGTAGACCATCGTTACCCGCCGCGGACAGGGCGTTCTTCGACTTGACA
ACCGCTATCAGCGTTTCGGGGTTATACTCGTCGTCTGGCCTCCAGGCGGC
AGCTCCGTCCGCGGCGAGAAAATCCAGGCTTGCCGCTAAGGCCGCTGCTT
TCGCCGCTGCCAGCGCGGGCGCATCCTCCTGGCCGAATTTCGGGCTGACT
TTGCCGAAGGTATCCTCGTTGGCAGGCTCGAGCTCATCCGACAATAACGC
TCTCACCGTGTTAGAGATCCCCCCTTTGTGCCTGCATGCAGCTGCCGCCT
TCCTGTATCGGTCCACCGTAGACGTGCTCCTCGCTGTCCACTGGCGGCGG
GCCGCCGCGGCCTCCGTAGACGCCATGAGCCACGGGAGCACGACGCTAAT
GCCCCCTCTCTTCACTGCGAGGAATCTGTCCCTCCTAGAGAATTGTGCGT
CGGTAGATAGAAGCAGCACCGGGAAAACGTGGTTGAGCTTCACTGCCCGT
CGCAAGGATAGCGGCGTCTCCGCGCCCGGCGCCCGGTGCCGGCTCACTTC
GTGGTGGAAGAGGTCCGTGCAGTGCAAAGAGAGTTGTGCTAGGTGGCGTT
GGAGACCGTGCTTCACCTGGATGACCGTCTCGTATCGTTGTTTGAACTCG
ACGACGGTGTAG
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