mRNA_H-paniculata_contig11421.921.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11421.921.1
Unique NamemRNA_H-paniculata_contig11421.921.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11421.921.1 vs. uniprot
Match: A0A6H5KKD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD6_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 4.330e-6
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:  124 EFVPM-EELDDETTLEAEEALANGATNSG--------------SAAAEVARLQAEADMPIEELMRM 276
            EFVP+ E++DDETTL+AEEALA GA  +G              + AAE+ARL+AEA++PIEELMR+
Sbjct:  825 EFVPVGEDVDDETTLDAEEALARGAEQAGPGDSSXXXXXXXAATEAAELARLKAEAELPIEELMRL 890
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BLAST of mRNA_H-paniculata_contig11421.921.1 vs. uniprot
Match: D7FTP0_ECTSI (Similar to E1a binding protein P400 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTP0_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 5.130e-5
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:  124 EFVPM-EELDDETTLEAEEALANGA---TNSGSAA-----------AEVARLQAEADMPIEELMRM 276
            EFVPM E++DDETTL+AE+ALA GA    + GS+            AE+ARL+AEA++PIEELMR+
Sbjct:  553 EFVPMGEDVDDETTLDAEDALARGAGEAVSGGSSGXXXXXXXXXXXAELARLKAEAELPIEELMRL 618
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11421.921.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KKD6_9PHAE4.330e-654.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTP0_ECTSI5.130e-554.55Similar to E1a binding protein P400 (Partial) (Fra... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11421contigH-paniculata_contig11421:4195..4946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size375
Cds size375
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928850.8222387-CDS-H-paniculata_contig11421:4194..43681622928850.8222387-CDS-H-paniculata_contig11421:4194..4368Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11421 4195..4368 +
1691480644.3520858-CDS-H-paniculata_contig11421:4194..43681691480644.3520858-CDS-H-paniculata_contig11421:4194..4368Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11421 4195..4368 +
1622928850.8383512-CDS-H-paniculata_contig11421:4745..49461622928850.8383512-CDS-H-paniculata_contig11421:4745..4946Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11421 4746..4946 +
1691480644.3597844-CDS-H-paniculata_contig11421:4745..49461691480644.3597844-CDS-H-paniculata_contig11421:4745..4946Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11421 4746..4946 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11421.921.1prot_H-paniculata_contig11421.921.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11421 4195..4946 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11421.921.1

>prot_H-paniculata_contig11421.921.1 ID=prot_H-paniculata_contig11421.921.1|Name=mRNA_H-paniculata_contig11421.921.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp
MERVGGGRDRRGGSGKGENDDDDDDDDDDDNGIGEGGEGEGEFVPMEELD
DETTLEAEEALANGATNSGSAAAEVARLQAEADMPIEELMRMAYGGAGSG
SGSSGVDDDGGGSDLVGDGDFDDDG
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mRNA from alignment at H-paniculata_contig11421:4195..4946+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11421.921.1 ID=mRNA_H-paniculata_contig11421.921.1|Name=mRNA_H-paniculata_contig11421.921.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=752bp|location=Sequence derived from alignment at H-paniculata_contig11421:4195..4946+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGCGGGTGGGTGGGGGTAGAGATAGGCGGGGAGGTTCGGGTAAGGG
TGAGAACGACGACGACGACGACGATGATGATGATGATGATAATGGTATCG
GGGAGGGAGGTGAGGGTGAGGGAGAGTTTGTGCCGATGGAGGAGTTGGAC
GATGAGACGACGTTGGAGGCCGAGGTGAGGAAGTAGTGTCGTACAGCTAA
GTGAGAGGGATTGCCGGATTGATTCCTGTAACTGTCGGAAACATGAGTCT
TCTTTCCACATTTAGTTTTTTTTTTTCCCGTTTTGGTTATTATGGGTACA
GACCAGCGATTTTGCGATATATATCATTTTCAGAACACTTTTCGCATGTT
CAATTATTCAAGTGTTTGCAAGTTTTTTTCCTTTACAGGTGATTTATACT
CTGGCCGTGTAGACGTAGATCCGCTGGCAGTGGGAAAATAGCGACCCGTA
GCAGATGGGTGGGGCAAGACCATGACGATTGATGTCCCTGTATGTCGTAG
GAAATATATGTGCTCTTCACGTTTTTTGTTTCGCTTCTGTTTCCATTGCA
GGAGGCGCTCGCGAACGGTGCCACAAACAGCGGAAGCGCGGCGGCCGAGG
TGGCGCGCTTACAGGCGGAGGCGGACATGCCAATAGAGGAGCTCATGCGA
ATGGCGTATGGAGGTGCGGGATCGGGATCGGGGAGCTCGGGCGTAGACGA
CGATGGCGGCGGGAGTGACCTCGTGGGAGATGGGGATTTCGATGACGATG
GC
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Coding sequence (CDS) from alignment at H-paniculata_contig11421:4195..4946+

>mRNA_H-paniculata_contig11421.921.1 ID=mRNA_H-paniculata_contig11421.921.1|Name=mRNA_H-paniculata_contig11421.921.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at H-paniculata_contig11421:4195..4946+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGCGGGTGGGTGGGGGTAGAGATAGGCGGGGAGGTTCGGGTAAGGG
TGAGAACGACGACGACGACGACGATGATGATGATGATGATAATGGTATCG
GGGAGGGAGGTGAGGGTGAGGGAGAGTTTGTGCCGATGGAGGAGTTGGAC
GATGAGACGACGTTGGAGGCCGAGATGGAGCGGGTGGGTGGGGGTAGAGA
TAGGCGGGGAGGTTCGGGTAAGGGTGAGAACGACGACGACGACGACGATG
ATGATGATGATGATAATGGTATCGGGGAGGGAGGTGAGGGTGAGGGAGAG
TTTGTGCCGATGGAGGAGTTGGACGATGAGACGACGTTGGAGGCCGAGGA
GGCGCTCGCGAACGGTGCCACAAACAGCGGAAGCGCGGCGGCCGAGGTGG
CGCGCTTACAGGCGGAGGCGGACATGCCAATAGAGGAGCTCATGCGAATG
GCGTATGGAGGTGCGGGATCGGGATCGGGGAGCTCGGGCGTAGACGACGA
TGGCGGCGGGAGTGACCTCGTGGGAGATGGGGATTTCGATGACGATGGCG
AGGCGCTCGCGAACGGTGCCACAAACAGCGGAAGCGCGGCGGCCGAGGTG
GCGCGCTTACAGGCGGAGGCGGACATGCCAATAGAGGAGCTCATGCGAAT
GGCGTATGGAGGTGCGGGATCGGGATCGGGGAGCTCGGGCGTAGACGACG
ATGGCGGCGGGAGTGACCTCGTGGGAGATGGGGATTTCGATGACGATGGC
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