mRNA_H-paniculata_contig34373.9174.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34373.9174.1
Unique NamemRNA_H-paniculata_contig34373.9174.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig34373.9174.1 vs. uniprot
Match: A0A6H5K0L2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0L2_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 2.990e-19
Identity = 39/45 (86.67%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    4 DAANPGMNMVVVEGGPRAVRAYIKLMTRRIRWGEEEFGDGASDSD 138
            D ANPGMNMVVVEGGP+AVRAY KLMTRRIRWGEEEFG+G SDS+
Sbjct:  143 DEANPGMNMVVVEGGPKAVRAYTKLMTRRIRWGEEEFGEGDSDSE 187
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BLAST of mRNA_H-paniculata_contig34373.9174.1 vs. uniprot
Match: D8LLJ5_ECTSI (Putative 34kDa cdc2-related protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLJ5_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 3.590e-18
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:   10 ANPGMNMVVVEGGPRAVRAYIKLMTRRIRWGEEEFGDGASDS 135
            ANPGMNMVVVEGGP+AVRAY KLMTRRIRWGEEEFG+G SDS
Sbjct:  180 ANPGMNMVVVEGGPKAVRAYTKLMTRRIRWGEEEFGEGDSDS 221
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BLAST of mRNA_H-paniculata_contig34373.9174.1 vs. uniprot
Match: A0A7S1ZTY5_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZTY5_TRICV)

HSP 1 Score: 54.7 bits (130), Expect = 1.190e-7
Identity = 23/45 (51.11%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:    4 DAANPGMNMVVVEGGPRAVRAYIKLMTRRIRWGEEEFGDGASDSD 138
            +  +P + +VV EGGPRAV+ YI+LMT R++W  E FGD + D D
Sbjct:   96 ECGSPELALVVAEGGPRAVKRYIRLMTVRMKWRGENFGDISDDDD 140
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BLAST of mRNA_H-paniculata_contig34373.9174.1 vs. uniprot
Match: A0A507E7R3_9FUNG (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507E7R3_9FUNG)

HSP 1 Score: 55.1 bits (131), Expect = 1.590e-7
Identity = 22/40 (55.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:   19 GMNMVVVEGGPRAVRAYIKLMTRRIRWGEEEFGDGASDSD 138
            GMNMV+VEGGP+ ++AY KLM +RI W  +  GD A+D +
Sbjct:  451 GMNMVIVEGGPKGIKAYKKLMLKRIDWSNQNEGDDAADGE 490
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BLAST of mRNA_H-paniculata_contig34373.9174.1 vs. uniprot
Match: A0A1S8VYY1_9FUNG (Uncharacterized protein n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VYY1_9FUNG)

HSP 1 Score: 53.5 bits (127), Expect = 5.560e-7
Identity = 21/42 (50.00%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:   16 PGMNMVVVEGGPRAVRAYIKLMTRRIRWGEEEFGDGASDSDR 141
            PG+N V+VEGGP+ ++AY KLM RRI W ++   +G  D +R
Sbjct:  331 PGLNAVIVEGGPKGIKAYKKLMLRRIDWEQKNSNEGDQDDER 372
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BLAST of mRNA_H-paniculata_contig34373.9174.1 vs. uniprot
Match: A0A836CLY2_9STRA (Pre-mRNA processing factor 3-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLY2_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 7.630e-7
Identity = 22/35 (62.86%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:   19 GMNMVVVEGGPRAVRAYIKLMTRRIRWGEEEFGDG 123
            G N VV EGGPRA+R ++KLMTRRIRW  ++F  G
Sbjct:  476 GTNAVVAEGGPRALRRFLKLMTRRIRWSGDDFDGG 510
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BLAST of mRNA_H-paniculata_contig34373.9174.1 vs. uniprot
Match: W7TVZ3_9STRA (U4 u6 small nuclear ribonucleoprotein prp3 (Fragment) n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TVZ3_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.140e-6
Identity = 21/33 (63.64%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:   19 GMNMVVVEGGPRAVRAYIKLMTRRIRWGEEEFG 117
            GM++VVVEGGPR+VR ++KLMTRRI+W  ++ G
Sbjct:  120 GMHLVVVEGGPRSVRRFVKLMTRRIKWRAQQEG 152
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BLAST of mRNA_H-paniculata_contig34373.9174.1 vs. uniprot
Match: A0A4D9D5P3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5P3_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.430e-6
Identity = 21/33 (63.64%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:   19 GMNMVVVEGGPRAVRAYIKLMTRRIRWGEEEFG 117
            GM++VVVEGGPR+VR ++KLMTRRI+W  ++ G
Sbjct:  461 GMHLVVVEGGPRSVRRFVKLMTRRIKWRAQQEG 493
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BLAST of mRNA_H-paniculata_contig34373.9174.1 vs. uniprot
Match: A0A7S2C0F0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C0F0_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 3.480e-6
Identity = 19/39 (48.72%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:   22 MNMVVVEGGPRAVRAYIKLMTRRIRWGEEEFGDGASDSD 138
            +++VVVEGGP+A++ Y +LM RRI+W  +EF + + +SD
Sbjct:  106 VSLVVVEGGPKAIKRYTRLMLRRIKWAGDEFDEDSDESD 144
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BLAST of mRNA_H-paniculata_contig34373.9174.1 vs. uniprot
Match: A0A812Q404_9DINO (Prpf3 protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812Q404_9DINO)

HSP 1 Score: 49.7 bits (117), Expect = 4.270e-6
Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:   10 ANPGM-NMVVVEGGPRAVRAYIKLMTRRIRWGEEE 111
            A PG+ N+VVVEGGPRAV+ Y KLM RRI+W EE+
Sbjct:   35 ACPGVANIVVVEGGPRAVKRYKKLMIRRIKWTEEQ 69
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34373.9174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K0L2_9PHAE2.990e-1986.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLJ5_ECTSI3.590e-1890.48Putative 34kDa cdc2-related protein kinase n=1 Tax... [more]
A0A7S1ZTY5_TRICV1.190e-751.11Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A507E7R3_9FUNG1.590e-755.00Uncharacterized protein n=1 Tax=Powellomyces hirtu... [more]
A0A1S8VYY1_9FUNG5.560e-750.00Uncharacterized protein n=1 Tax=Batrachochytrium s... [more]
A0A836CLY2_9STRA7.630e-762.86Pre-mRNA processing factor 3-domain-containing pro... [more]
W7TVZ3_9STRA1.140e-663.64U4 u6 small nuclear ribonucleoprotein prp3 (Fragme... [more]
A0A4D9D5P3_9STRA1.430e-663.64Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2C0F0_9STRA3.480e-648.72Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A812Q404_9DINO4.270e-668.57Prpf3 protein n=1 Tax=Symbiodinium sp. CCMP2456 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34373contigH-paniculata_contig34373:1512..1655 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.9
Seed ortholog evalue1.9e-11
Seed eggNOG ortholog2880.D8LLJ5
Preferred nameCDK18
KEGG koko:K04563,ko:K06655,ko:K07760,ko:K08282,ko:K08820,ko:K08821,ko:K12843,ko:K15594,ko:K15595,ko:K15596,ko:K17579
KEGG Pathwayko03040,ko04011,ko04111,ko04113,ko04138,ko05202,map03040,map04011,map04111,map04113,map04138,map05202
KEGG ModuleM00354,M00692,M00693
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000075,GO:0000077,GO:0000082,GO:0000083,GO:0000086,GO:0000122,GO:0000226,GO:0000244,GO:0000278,GO:0000302,GO:0000307,GO:0000308,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0001700,GO:0002009,GO:0002164,GO:0002165,GO:0002168,GO:0002177,GO:0002790,GO:0002791,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003779,GO:0003824,GO:0004672,GO:0004674,GO:0004693,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0005768,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0005979,GO:0006109,GO:0006139,GO:0006259,GO:0006260,GO:0006325,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006887,GO:0006897,GO:0006907,GO:0006909,GO:0006950,GO:0006974,GO:0006977,GO:0006979,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007089,GO:0007093,GO:0007098,GO:0007099,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0007267,GO:0007275,GO:0007276,GO:0007283,GO:0007346,GO:0007399,GO:0007552,GO:0008021,GO:0008092,GO:0008150,GO:0008152,GO:0008284,GO:0008380,GO:0009058,GO:0009059,GO:0009267,GO:0009605,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009793,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009896,GO:0009898,GO:0009914,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010154,GO:0010389,GO:0010467,GO:0010468,GO:0010506,GO:0010507,GO:0010508,GO:0010556,GO:0010558,GO:0010562,GO:0010563,GO:0010564,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0010675,GO:0010677,GO:0010817,GO:0010906,GO:0010921,GO:0010948,GO:0010962,GO:0012505,GO:0015030,GO:0015630,GO:0015631,GO:0015833,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016192,GO:0016239,GO:0016241,GO:0016242,GO:0016301,GO:0016310,GO:0016569,GO:0016570,GO:0016572,GO:0016604,GO:0016607,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018193,GO:0018209,GO:0019216,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019897,GO:0019898,GO:0019904,GO:0019953,GO:0019954,GO:0022008,GO:0022402,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023052,GO:0023057,GO:0023061,GO:0030030,GO:0030072,GO:0030111,GO:0030133,GO:0030154,GO:0030182,GO:0030252,GO:0030330,GO:0030332,GO:0030424,GO:0030425,GO:0030435,GO:0030532,GO:0030587,GO:0031023,GO:0031152,GO:0031156,GO:0031157,GO:0031175,GO:0031234,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031330,GO:0031331,GO:0031410,GO:0031505,GO:0031570,GO:0031571,GO:0031647,GO:0031667,GO:0031668,GO:0031669,GO:0031935,GO:0031974,GO:0031981,GO:0031982,GO:0032101,GO:0032104,GO:0032107,GO:0032501,GO:0032502,GO:0032504,GO:0032878,GO:0032879,GO:0032880,GO:0032881,GO:0032885,GO:0032940,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0034599,GO:0034614,GO:0034622,GO:0034641,GO:0034645,GO:0035303,GO:0035556,GO:0035690,GO:0036211,GO:0036477,GO:0040007,GO:0042127,GO:0042221,GO:0042493,GO:0042594,GO:0042763,GO:0042764,GO:0042770,GO:0042802,GO:0042886,GO:0042995,GO:0043005,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043255,GO:0043412,GO:0043433,GO:0043467,GO:0043900,GO:0043933,GO:0043934,GO:0044030,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0044764,GO:0044770,GO:0044772,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0044839,GO:0044843,GO:0044877,GO:0045202,GO:0045229,GO:0045292,GO:0045719,GO:0045786,GO:0045787,GO:0045834,GO:0045892,GO:0045912,GO:0045930,GO:0045931,GO:0045934,GO:0045936,GO:0045937,GO:0046483,GO:0046540,GO:0046879,GO:0046883,GO:0046889,GO:0046890,GO:0046903,GO:0048232,GO:0048316,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048589,GO:0048608,GO:0048609,GO:0048646,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0050708,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050796,GO:0050848,GO:0050849,GO:0050896,GO:0051046,GO:0051049,GO:0051052,GO:0051090,GO:0051128,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051223,GO:0051234,GO:0051252,GO:0051253,GO:0051276,GO:0051298,GO:0051321,GO:0051336,GO:0051703,GO:0051704,GO:0051716,GO:0051726,GO:0060176,GO:0060255,GO:0060341,GO:0060429,GO:0060828,GO:0060968,GO:0061178,GO:0061458,GO:0061695,GO:0062012,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070201,GO:0070382,GO:0070840,GO:0070873,GO:0070874,GO:0070887,GO:0070925,GO:0071005,GO:0071011,GO:0071071,GO:0071073,GO:0071156,GO:0071158,GO:0071241,GO:0071496,GO:0071554,GO:0071555,GO:0071702,GO:0071704,GO:0071705,GO:0071731,GO:0071732,GO:0071826,GO:0071840,GO:0071852,GO:0071944,GO:0072331,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0080090,GO:0080134,GO:0080135,GO:0090068,GO:0090087,GO:0090276,GO:0090304,GO:0090702,GO:0097124,GO:0097159,GO:0097366,GO:0097447,GO:0097458,GO:0097472,GO:0097525,GO:0097526,GO:0097708,GO:0098534,GO:0098552,GO:0098562,GO:0098630,GO:0098657,GO:0098743,GO:0098793,GO:0099120,GO:0099503,GO:0120025,GO:0120036,GO:0120038,GO:0120114,GO:0140096,GO:1900087,GO:1901360,GO:1901363,GO:1901564,GO:1901576,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901796,GO:1901987,GO:1901988,GO:1901989,GO:1901990,GO:1901991,GO:1901992,GO:1902170,GO:1902275,GO:1902400,GO:1902402,GO:1902403,GO:1902494,GO:1902531,GO:1902532,GO:1902554,GO:1902679,GO:1902749,GO:1902806,GO:1902807,GO:1902808,GO:1902911,GO:1903047,GO:1903506,GO:1903507,GO:1903530,GO:1903725,GO:1903727,GO:1990234,GO:1990860,GO:1990904,GO:2000045,GO:2000112,GO:2000113,GO:2000134,GO:2001141
EggNOG free text desc.mRNA splicing, via spliceosome
EggNOG OGsKOG0594@1,KOG0594@2759,KOG2769@1,KOG2769@2759
EC2.7.11.1,2.7.11.22
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko01009,ko03019,ko03041,ko04812
Exons1
Model size144
Cds size123
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930060.9174423-UTR-H-paniculata_contig34373:1511..15321622930060.9174423-UTR-H-paniculata_contig34373:1511..1532Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34373 1512..1532 +
1691481130.6535506-UTR-H-paniculata_contig34373:1511..15321691481130.6535506-UTR-H-paniculata_contig34373:1511..1532Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34373 1512..1532 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930060.9307134-CDS-H-paniculata_contig34373:1532..16551622930060.9307134-CDS-H-paniculata_contig34373:1532..1655Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34373 1533..1655 +
1691481130.6675766-CDS-H-paniculata_contig34373:1532..16551691481130.6675766-CDS-H-paniculata_contig34373:1532..1655Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34373 1533..1655 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34373.9174.1prot_H-paniculata_contig34373.9174.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34373 1533..1655 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34373.9174.1

>prot_H-paniculata_contig34373.9174.1 ID=prot_H-paniculata_contig34373.9174.1|Name=mRNA_H-paniculata_contig34373.9174.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=41bp
MNMVVVEGGPRAVRAYIKLMTRRIRWGEEEFGDGASDSDR*
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mRNA from alignment at H-paniculata_contig34373:1512..1655+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34373.9174.1 ID=mRNA_H-paniculata_contig34373.9174.1|Name=mRNA_H-paniculata_contig34373.9174.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=144bp|location=Sequence derived from alignment at H-paniculata_contig34373:1512..1655+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGACGCGGCGAATCCAGGCATGAACATGGTGGTGGTAGAAGGGGGCCC
GAGGGCCGTACGGGCGTACATCAAGCTCATGACAAGACGCATTCGGTGGG
GGGAAGAGGAGTTTGGGGACGGCGCCTCCGATTCCGATAGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig34373:1512..1655+

>mRNA_H-paniculata_contig34373.9174.1 ID=mRNA_H-paniculata_contig34373.9174.1|Name=mRNA_H-paniculata_contig34373.9174.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=246bp|location=Sequence derived from alignment at H-paniculata_contig34373:1512..1655+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACATGGTGGTGGTAGAAGGGGGCCCGAGGGCCGTACGGGCGTACAT
CAAGCTCATGACAAGACGCATTCGGTGGGGGGAAGAGGAGTTTGGGGACG
GCGCCTCCGATTCCGATAGGTGAATGAACATGGTGGTGGTAGAAGGGGGC
CCGAGGGCCGTACGGGCGTACATCAAGCTCATGACAAGACGCATTCGGTG
GGGGGAAGAGGAGTTTGGGGACGGCGCCTCCGATTCCGATAGGTGA
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