mRNA_H-paniculata_contig34372.9173.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34372.9173.1
Unique NamemRNA_H-paniculata_contig34372.9173.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig34372.9173.1 vs. uniprot
Match: A0A7D9KES8_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KES8_PARCT)

HSP 1 Score: 227 bits (578), Expect = 4.640e-65
Identity = 127/326 (38.96%), Postives = 198/326 (60.74%), Query Frame = 1
Query:   25 DEGGETNVLVAVYVDNLVIAGRRE-KVDELKHNISQRFRMKDLGSLSRVLGIEVRRDRPDGTITISQGSYSREVLKR*GFDEFRHPSRPTSPPNRSHLELYYRRSGNLSEYRGMVGSLMYASTRTRPDIAYAVHKAARRAEDRCREDFGTCKRIFRYPSTVPDLGIMFAGRSNGHGLEGFVDAD*AEDVEDRKSTTGYVFKLNDGAISSCSRKQQLVT*SSTEAEYVAAGEAGKERVYLRELLGSIGFGCRGNTTLFEDNKSVINISKGSGSHSRTKHIGVRWHGIREWIREGLLTLKRVQTSDQLADILTKGLSRVQFQTLRNLL 999
            +EGGE   ++AVYVD++++AG+ + K++E+K  ++++F+MKD+G L   LG++V        I I Q +Y++ VL+R G +  +  S P +P  +        +  +   Y+  VG L+Y ST+TRPDIAYAV   AR + D   E +   KRI RY +   D+G+++ G        G+ DAD A D++DRKST+GYVF++++ AIS  S+KQ  V  S+ EAEY+A   A +E V+L++LL  +     G   + EDN++ I ++K +  H R KHI +++H IRE +    + L+   T + +ADI TKGLS VQF  LR +L
Sbjct:  167 EEGGEI-FIIAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQLHYFLGVKVIPKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKKAADDSQRVDQVNYQCAVGHLLYLSTKTRPDIAYAVSDVARFSADPTEEHWIAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKSTSGYVFQISNAAISWRSKKQSCVALSTAEAEYMALASATQEAVWLQQLLSDLKSKPTGPMLILEDNQAAICMAKNAQYHGRAKHIDIKYHFIREHVASAAVKLEYCSTEEMIADIFTKGLSVVQFTKLRKML 491          
BLAST of mRNA_H-paniculata_contig34372.9173.1 vs. uniprot
Match: A0A7D9M6E1_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M6E1_PARCT)

HSP 1 Score: 218 bits (554), Expect = 1.700e-64
Identity = 119/333 (35.74%), Postives = 201/333 (60.36%), Query Frame = 1
Query:    1 DSRLYFSGDEGGETNVLVAVYVDNLVIAGRR-EKVDELKHNISQRFRMKDLGSLSRVLGIEVRRDRPDGTITISQGSYSREVLKR*GFDEFRHPSRPTSPPNRSHLELYYRRSGNLSEYRGMVGSLMYASTRTRPDIAYAVHKAARRAEDRCREDFGTCKRIFRYPSTVPDLGIMFAGRSNGHGLEGFVDAD*AEDVEDRKSTTGYVFKLNDGAISSCSRKQQLVT*SSTEAEYVAAGEAGKERVYLRELLGSIGFGCRGNTTLFEDNKSVINISKGSGSHSRTKHIGVRWHGIREWIREGLLTLKRVQTSDQLADILTKGLSRVQFQTLRNL 996
            D  +Y   ++G     +VA++VD++++AG+  EK+ ++K +I++RF++KD+G L  +LG++V ++  DG + I Q +Y+  ++K+ G +  +    P    ++    +      N  EY+  VGSL+Y S+ TRPDI +AV+  A+ + +   E +   KRIFRY     + G++++  +N   + GF DAD A D+ DRKST+GY F++N  A+S  S+KQ  V  S+ EAEYVA   A +E +++R+LL  +        T++EDN+S I +SK    H R+KHI +++H +R+ + +  LT+    T   LAD+ TKG+ + QF+ LR L
Sbjct:   49 DPCIYVKEEDGDI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DGKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSELFNKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANFTNEHWTAVKRIFRYLKKTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLLTDLNVNIDKPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYHFVRDQVEKKTLTVLYCPTGSMLADLFTKGIPKEQFKKLREL 376          
BLAST of mRNA_H-paniculata_contig34372.9173.1 vs. uniprot
Match: A0A6S7JEY7_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JEY7_PARCT)

HSP 1 Score: 221 bits (564), Expect = 2.000e-63
Identity = 124/326 (38.04%), Postives = 196/326 (60.12%), Query Frame = 1
Query:   25 DEGGETNVLVAVYVDNLVIAGRRE-KVDELKHNISQRFRMKDLGSLSRVLGIEVRRDRPDGTITISQGSYSREVLKR*GFDEFRHPSRPTSPPNRSHLELYYRRSGNLSEYRGMVGSLMYASTRTRPDIAYAVHKAARRAEDRCREDFGTCKRIFRYPSTVPDLGIMFAGRSNGHGLEGFVDAD*AEDVEDRKSTTGYVFKLNDGAISSCSRKQQLVT*SSTEAEYVAAGEAGKERVYLRELLGSIGFGCRGNTTLFEDNKSVINISKGSGSHSRTKHIGVRWHGIREWIREGLLTLKRVQTSDQLADILTKGLSRVQFQTLRNLL 999
            +EGGE   ++AVYVD++++AG+ + K++E+K  ++++F+MKD+G     LG++V +      I I Q +Y++ VL+R G +  +  S P +P  +        +  +   Y+  VG L+Y ST+TRPDIAYAV   AR +     E +   KRI RY +   D+G+++ G        G+ DAD A D++DRKST+GYVF++++ AIS  S+KQ  V  S+ EAEY+    A +E V+L++LL  +     G   + EDN++ I ++K +  H R KHI +++H IRE +    + L+   T + +ADI TKGLS VQF  LR +L
Sbjct:  315 EEGGEI-FIIAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQRHYFLGVKVIQKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKKAADDSQRVDQVNYQCAVGHLLYLSTKTRPDIAYAVSDVARFSAHPTEEHWIAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKSTSGYVFQISNAAISWRSKKQSCVALSTAEAEYMTLASATQEAVWLQQLLSDLKSKPTGPMLILEDNQAAICMAKNAQYHGRAKHIDIKYHFIREHVASAAVKLEYCSTEEMIADIFTKGLSVVQFTKLRKML 639          
BLAST of mRNA_H-paniculata_contig34372.9173.1 vs. uniprot
Match: A0A7D9D5L2_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D5L2_PARCT)

HSP 1 Score: 207 bits (527), Expect = 2.170e-61
Identity = 115/300 (38.33%), Postives = 173/300 (57.67%), Query Frame = 1
Query:  100 VDELKHNISQRFRMKDLGSLSRVLGIEVRRDRPDGTITISQGSYSREVLKR*GFDEFRHPSRPTSPPNRSHLELYYRRSGNLSEYRGMVGSLMYASTRTRPDIAYAVHKAARRAEDRCREDFGTCKRIFRYPSTVPDLGIMFAGRSNGHGLEGFVDAD*AEDVEDRKSTTGYVFKLNDGAISSCSRKQQLVT*SSTEAEYVAAGEAGKERVYLRELLGSIGFGCRGNTTLFEDNKSVINISKGSGSHSRTKHIGVRWHGIREWIREGLLTLKRVQTSDQLADILTKGLSRVQFQTLRNLL 999
            + E K  I  +F++ D+G +  VLG+ +RRDR  G +TISQ +Y + +LKR G ++ +  S P  P              N +EY+ ++G L Y +T TRPD+A AV   ++      +E +   KR+ RY     + G++F G+S    L G+ DAD A D++ R+ST+GYVF++N   +S CS++Q  VT S+TEAEYVA   A +E V+LR LL  IG      + + EDN+  I +SK    H+RTKHI V +H +RE + +  + +    T   LAD++TK L R  FQ  R++L
Sbjct:    2 LSEEKKLIGLKFKVDDMGEVKHVLGMVIRRDRRKGKMTISQSTYLQGILKRFGMEQCKPVSTPLEPGKHFQELPDDENPTNTNEYQKLIGCLTYVTTATRPDLASAVGILSKFMSKPSKEHWHGAKRVLRYIKDTVNYGLVFEGKSTKCSLIGYSDADWANDLDTRRSTSGYVFQINGSTVSWCSKRQPCVTRSTTEAEYVALSHATQEIVWLRRLLNDIGEKQDQPSIMNEDNQGAIELSKNPRFHNRTKHIDVAYHFVREKVGDKSINVNYCSTDKMLADVMTKSLPRQTFQKFRDML 301          
BLAST of mRNA_H-paniculata_contig34372.9173.1 vs. uniprot
Match: A0A8H7NTQ9_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Postia placenta TaxID=104341 RepID=A0A8H7NTQ9_9APHY)

HSP 1 Score: 221 bits (563), Expect = 3.030e-61
Identity = 128/324 (39.51%), Postives = 191/324 (58.95%), Query Frame = 1
Query:    1 DSRLYFSGDEGGETNVLVAVYVDN-LVIAGRREKVDELKHNISQRFRMKDLGSLSRVLGIEVRRDRPDGTITISQGSYSREVLKR*GFDEFRHPSRPTSPPNRSHLELYYRRSGNLSEYRGMVGSLMYASTRTRPDIAYAVHKAARRAEDRCREDFGTCKRIFRYPSTVPDLGIMFAGRSNGHGLEGFVDAD*AEDVEDRKSTTGYVFKLNDGAISSCSRKQQLVT*SSTEAEYVAAGEAGKERVYLRELLGSIGFGCRGNTTLFEDNKSVINISKGSGSHSRTKHIGVRWHGIREWIREGLLTLKRVQTSDQLADILTKGLSR 969
            D  +++  D G  T V++A+YVD+ L+++   + V+ LK N+  RF M DLG    +L +E+ RDRP   + +SQ  Y  + L+R G  + R  S P +  N+ HL+L      +   Y+  +GSLMYA  RTRPD+A+AV   ++ A    +E +    R++RY     D  +++ G +    L G+VDAD A D+ DR+S TG+VF ++  A++  S+KQ     SSTEAEY+A     KE ++LR  L  IG    G+T L  DN+S I ++K    H+RTKHI VR+H IRE    G +T + V T +Q+AD+LTKGL+R
Sbjct:  800 DHSVFYKVDNG--TLVIIAIYVDDMLILSDDIDAVNTLKANLKSRFEMTDLGEARWILSMEILRDRPRRLLELSQHQYVEKALERHGMADCRPVSTPMAQ-NQKHLKLPQAEI-DPKPYQSALGSLMYAMLRTRPDLAFAVGALSQHAATPGKEHWHALMRVYRYLRGTSDRRLVYNGTAKEKHLLGYVDADWAADINDRRSVTGFVFLISGAAVTWSSKKQSSTAQSSTEAEYMAGAHGTKEAIWLRAFLSEIGQAISGSTPLLIDNQSAIALAKNPEFHNRTKHIAVRYHFIREKYDSGDITPEYVPTGNQVADVLTKGLAR 1119          
BLAST of mRNA_H-paniculata_contig34372.9173.1 vs. uniprot
Match: H3GB17_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB17_PHYRM)

HSP 1 Score: 209 bits (533), Expect = 4.290e-61
Identity = 122/312 (39.10%), Postives = 190/312 (60.90%), Query Frame = 1
Query:   49 LVAVYVDNLVIAGR-REKVDELKHNISQRFRMKDLGSLSRVLGIEVRRDRPDGTITISQGSYSREVLKR*GFDEFRHPSRPTSPPNR----SHLELYYRRSGNLSEYRGMVGSLMYASTRTRPDIAYAVHKAARRAEDRCREDFGTCKRIFRYPSTVPDLGIMFAGRSNGHGLEGFVDAD*AEDVEDRKSTTGYVFKLNDGAISSCSRKQQLVT*SSTEAEYVAAGEAGKERVYLRELLGSIGFGCRGNTTLFEDNKSVINISKGSGSHSRTKHIGVRWHGIREWIREGLLTLKRVQTSDQLADILTKGLSR 969
            ++ VYVD+L+I  R + ++ E+K  + + F +K+LG L   LGIE+ R+R D TI ++Q +Y + + ++ G ++ +    P    ++    +  E++  R      YR +VG+LMY +T TRPDIA AV + A+  E   +  +   KRI +Y  T  DLG++F G + G  L G+ DA  A D++ R+STTGYVF LN  AIS  S++Q  V  SSTEAEY+A   A +E V+LR+LL  +G  C   TT+F+DN+  I ++K    HSRTKHI +++H +RE + + ++ L+   T + +AD  TK L+R
Sbjct:   88 IIIVYVDDLMIFSRTKAEIGEIKKALKREFSIKELGELKYCLGIEIHRNRDDKTIVMNQRAYIQRLAEKFGVEKCKAVHTPADSNSKLVKPAEDEVFVPRY----PYRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDLGLVFNGGTKGE-LIGYADASWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVAATTIFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLEYKPTDEMIADGFTKALAR 394          
BLAST of mRNA_H-paniculata_contig34372.9173.1 vs. uniprot
Match: A0A0S7JP25_9TELE (POLX n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7JP25_9TELE)

HSP 1 Score: 208 bits (529), Expect = 6.040e-61
Identity = 128/321 (39.88%), Postives = 185/321 (57.63%), Query Frame = 1
Query:   49 LVAVYVDNLV-IAGRREKVDELKHNISQRFRMKDLGSLSRVLGIEVRRDRPDGTITISQGSYSREVLKR*GFDEFRHPSRPTSPPNRSHLELYYRRSGNLSE------YRGMVGSLMYASTRTRPDIAYAVHKAARRAEDRCREDFGTCKRIFRYPSTVPDLGIMFAGRSNGHGLEGFVDAD*AEDVEDRKSTTGYVFKLNDGAISSCSRKQQLVT*SSTEAEYVAAGEAGKERVYLRELLGSIGFGCRGNTTLFEDNKSVINISKGSGSHSRTKHIGVRWHGIREWIREGLLTLKRVQTSDQLADILTKGLSRVQFQTLR 990
            ++AVYVD+L+ I    E +DELK  + +R++MKDLG LS +LGI V +D+    I + Q  Y   +LK+ G D+    + P + P  + + +  ++   +S       Y+ MVGSL+YA+  TRPDIA AV   ++   +         KRI RY     +L + F    N   L GF DAD A D++DR STTG +F L+ GA+S  S+KQ  V  S+ EAEYVA  +A +E  +LR LL  +G   +  T + EDN+  I I+K    HSRTKHI +R+H IRE +++G + L+   T    ADILTK L+R +F+  R
Sbjct:   49 IIAVYVDDLMLITESTESMDELKLTLQERYKMKDLGELSYILGISVIQDKEKNCICLHQKQYIETILKKYGMDK----ANPVATP--ADISVKLKKDDGVSNPVDPSTYQSMVGSLLYAAMTTRPDIAQAVSAVSKFNANPNTAHLTAVKRILRYLKGTVNLALKFDCAGN-KDLIGFSDADWAGDLDDRHSTTGNIFLLSGGAVSWLSKKQATVALSTAEAEYVALSQAAQEGTWLRRLLNDLGMVTK-PTVILEDNQGAIAIAKNPVDHSRTKHIDIRYHYIRECVQDGEVKLEYCPTDKMKADILTKPLARQKFENFR 361          
BLAST of mRNA_H-paniculata_contig34372.9173.1 vs. uniprot
Match: A0A438EU98_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=7 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EU98_VITVI)

HSP 1 Score: 206 bits (525), Expect = 1.380e-60
Identity = 126/317 (39.75%), Postives = 190/317 (59.94%), Query Frame = 1
Query:   46 VLVAVYVDNLVIAGRR-EKVDELKHNISQRFRMKDLGSLSRVLGIEVRRDRPDGTITISQGSYSREVLKR*GFDEFRHPSRPTSPPNRSHLELYYRRSGNLSE---------YRGMVGSLMYASTRTRPDIAYAVHKAARRAEDRCREDFGTCKRIFRYPSTVPDLGIMFAGRSNGHGLEGFVDAD*AEDVEDRKSTTGYVFKLNDGAISSCSRKQQLVT*SSTEAEYVAAGEAGKERVYLRELLGSIGFGCRGNTTLFEDNKSVINISKGSGSHSRTKHIGVRWHGIREWIREGLLTLKRVQTSDQLADILTKGLS 966
            +++ +YVD+++IAG   EK++ LK  +S++F MKDLG+  ++LG+ + RD+ +GT+ +SQ  Y ++VL R   +E    ++P S P  SH +L   +S    E         Y   +GSLMYA   TRPDIA+AV   +R      ++ +   K I RY     D  + F G S    L+G+VDAD A D++ RKSTTG+VF L   AIS  S  Q++VT S+TEAEYVAA EAGKE ++L   L  +G   +    L  D++S I ++K S  HS++KHI  ++H IR  + + L+ L+++  S   AD+LTKG++
Sbjct:   25 IILLLYVDDMLIAGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNE----AKPVSTPLGSHFKLSKEQSPKTEEERDHMSKVPYASAIGSLMYAMVCTRPDIAHAVGVVSRFMSRPGKQHWEAVKWILRYLKGSLDTCLCFTGASLK--LQGYVDADFAGDIDSRKSTTGFVFTLGGTAISWTSNLQKIVTLSTTEAEYVAATEAGKEMIWLHGFLDELGK-KQEMGILHSDSQSAIFLAKNSAFHSKSKHIQTKYHFIRYLVEDKLVILEKICGSKNPADMLTKGVT 334          
BLAST of mRNA_H-paniculata_contig34372.9173.1 vs. uniprot
Match: A0A482ZNW2_9GAMM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=uncultured SUP05 cluster bacterium TaxID=655186 RepID=A0A482ZNW2_9GAMM)

HSP 1 Score: 206 bits (524), Expect = 2.060e-60
Identity = 123/333 (36.94%), Postives = 190/333 (57.06%), Query Frame = 1
Query:    1 DSRLYFSGDEGGETNVLVAVYVDNLVIAGR-REKVDELKHNISQRFRMKDLGSLSRVLGIEVRRDRPDGTITISQGSYSREVLKR*GFDEFRHPSRPTSPPNRSHLELYYRRSGNLSEYRGMVGSLMYASTRTRPDIAYAVHKAARRAEDRCREDFGTCKRIFRYPSTVPDLGIMFAGRSNGHGLEGFVDAD*AEDVEDRKSTTGYVFKLNDGAISSCSRKQQLVT*SSTEAEYVAAGEAGKERVYLRELLGSIGFGCRGNTTLFEDNKSVINISKGSGSHSRTKHIGVRWHGIREWIREGLLTLKRVQTSDQLADILTKGLSRVQFQTLRNL 996
            D  +Y S +  GET+V + VYVD+ VIA +  EK +E+K  +S++F +KDLG L   LG++V +D   GTI I Q +++  +L++ G  E +    P    ++           + S Y+  VGSL+Y +TRTR DIA+AV+  AR      +  +   KRIFRY       G++++  S      G+ DAD   D  D KSTTGY+F++   A++   +KQ  V  S+ E+EY+A   A +E V++REL   +G      T ++EDN+S I ++K    H R+KHIG+++H IRE +    + L+   T D +ADILTKG+   +F+ LR +
Sbjct:    9 DPCIYTSSE--GETSV-IGVYVDDFVIATKDTEKFEEVKAALSEKFDVKDLGRLHYFLGVQVIQDEEKGTIWIGQPTFTESILQKYGMCEAKPVKTPVCVNSKLLKASEESELTDQSLYQSAVGSLLYLATRTRLDIAFAVNNVARYCSKPTKPHWIAVKRIFRYLRGTTHFGLLYSRGSGAPTPIGYSDADWGGDCNDHKSTTGYLFQIGGTAVTWKCKKQSSVALSTAESEYMALSSAAQEAVWIRELNSDLGNPQSQPTLIYEDNQSAIAMAKNPQFHGRSKHIGIKYHFIREQVSNDKICLQYCPTEDMIADILTKGIGPEKFEKLRKM 338          
BLAST of mRNA_H-paniculata_contig34372.9173.1 vs. uniprot
Match: A0A7D9IUY0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUY0_PARCT)

HSP 1 Score: 219 bits (557), Expect = 2.550e-60
Identity = 128/334 (38.32%), Postives = 198/334 (59.28%), Query Frame = 1
Query:    1 DSRLYFSGD--EGGETN-VLVAVYVDNLV-IAGRREKVDELKHNISQRFRMKDLGSLSRVLGIEVRRDRPDGTITISQGSYSREVLKR*GFDEFRHPSRPTSPPNRSHLELYYRRSGNLSEYRGMVGSLMYASTRTRPDIAYAVHKAARRAEDRCREDFGTCKRIFRYPSTVPDLGIMFAGRSNGHGLEGFVDAD*AEDVEDRKSTTGYVFKLNDGAISSCSRKQQLVT*SSTEAEYVAAGEAGKERVYLRELLGSIGFGCRGNTTLFEDNKSVINISKGSGSHSRTKHIGVRWHGIREWIREGLLTLKRVQTSDQLADILTKGLSRVQFQTLR 990
            DS LY      + G+ N V+++++VD+++  +     ++E K  I  +F+++DLG +S +LG+ ++RDR   T+TISQ  Y   VLKR   +E +  S P  P  + H      R  N+ EY+ ++G L Y +T TRPD+A AV   ++      +E +   KRI RY     + GI F  +     L G+ DAD A D E R+ST+GY+F+++   IS CS+KQ  V+ SSTEAEY+A   A +E ++LR LL +IG   + +T + EDN++ I +S+    H+RTKHI V +H +RE +++  + +   +T + LADILTKGL R  F+ LR
Sbjct: 1011 DSCLYMKSVKLQNGKINFVILSIHVDDILWFSNDVIMLEEEKVAIGTKFKVEDLGEVSHILGMLIKRDRDSRTLTISQSKYLEGVLKRFNMEECKPVSTPLEPGKQFHELSDDERPANIHEYQKIIGCLTYVTTATRPDLAAAVGILSKYMTKPSQEHWKGVKRILRYIKGTLNFGITFQAKDQTCILTGYSDADWANDTETRRSTSGYIFQISGCTISWCSKKQSCVSRSSTEAEYMALSLATQEAIWLRRLLENIGVKQKESTVMCEDNQAAIQLSRNPKFHNRTKHIDVAFHFVREKVQDKSIDVVYCRTDEMLADILTKGLPRQTFEKLR 1344          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34372.9173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7D9KES8_PARCT4.640e-6538.96Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A7D9M6E1_PARCT1.700e-6435.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7JEY7_PARCT2.000e-6338.04Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9D5L2_PARCT2.170e-6138.33Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
A0A8H7NTQ9_9APHY3.030e-6139.51Integrase catalytic domain-containing protein n=1 ... [more]
H3GB17_PHYRM4.290e-6139.10Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0S7JP25_9TELE6.040e-6139.88POLX n=2 Tax=Poeciliopsis prolifica TaxID=188132 R... [more]
A0A438EU98_VITVI1.380e-6039.75Retrovirus-related Pol polyprotein from transposon... [more]
A0A482ZNW2_9GAMM2.060e-6036.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9IUY0_PARCT2.550e-6038.32Retrovirus-related Pol poly from transposon TNT 1-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34372contigH-paniculata_contig34372:400..1441 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1002
Cds size216
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34372.9173.1prot_H-paniculata_contig34372.9173.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34372 826..1041 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930060.8185787-UTR-H-paniculata_contig34372:399..8251622930060.8185787-UTR-H-paniculata_contig34372:399..825Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34372 400..825 -
1691481130.6152108-UTR-H-paniculata_contig34372:399..8251691481130.6152108-UTR-H-paniculata_contig34372:399..825Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34372 400..825 -
1622930060.8479283-UTR-H-paniculata_contig34372:1041..11351622930060.8479283-UTR-H-paniculata_contig34372:1041..1135Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34372 1042..1135 -
1691481130.6341827-UTR-H-paniculata_contig34372:1041..11351691481130.6341827-UTR-H-paniculata_contig34372:1041..1135Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34372 1042..1135 -
1622930060.866645-UTR-H-paniculata_contig34372:1175..14411622930060.866645-UTR-H-paniculata_contig34372:1175..1441Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34372 1176..1441 -
1691481130.6435525-UTR-H-paniculata_contig34372:1175..14411691481130.6435525-UTR-H-paniculata_contig34372:1175..1441Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34372 1176..1441 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930060.8348134-CDS-H-paniculata_contig34372:825..10411622930060.8348134-CDS-H-paniculata_contig34372:825..1041Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34372 826..1041 -
1691481130.6249816-CDS-H-paniculata_contig34372:825..10411691481130.6249816-CDS-H-paniculata_contig34372:825..1041Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34372 826..1041 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34372.9173.1

>prot_H-paniculata_contig34372.9173.1 ID=prot_H-paniculata_contig34372.9173.1|Name=mRNA_H-paniculata_contig34372.9173.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
MVGSLMYASTRTRPDIAYAVHKAARRAEDRCREDFGTCKRIFRYPSTVPD
LGIMFAGRSNGHGLEGFVDAD*
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mRNA from alignment at H-paniculata_contig34372:400..1441-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34372.9173.1 ID=mRNA_H-paniculata_contig34372.9173.1|Name=mRNA_H-paniculata_contig34372.9173.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1042bp|location=Sequence derived from alignment at H-paniculata_contig34372:400..1441- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACTCACGCTTGTACTTTTCCGGCGACGAAGGGGGAGAAACAAACGTTCT GGTGGCCGTCTATGTTGACAACCTAGTCATTGCTGGTCGTCGTGAAAAAG TAGACGAGCTCAAGCATAACATAAGTCAGCGTTTTAGAATGAAAGACTTG GGCTCTCTCTCGCGCGTGTTGGGAATAGAAGTACGACGTGACCGCCCTGA TGGTACCATAACGATCTCTCAAGGTAGCTACAGCCGCGAGGTACTAAAAA GATAGGGTTTTGACGAGTGTCGAGGAGTACCCACCCCTGTAGAGGGAAAA GTGAAGATTTCGGCACCCGAGTCGGCCGACAAGCCCTCCGAACAGAAGTC ACTTGGAGCTGTACTATCGGAGAAGTGGCAATTTGTCTGAATACAGAGGC ATGGTAGGATCACTCATGTACGCCTCGACAAGAACTAGACCTGATATAGC ATACGCGGTGCACAAAGCAGCACGTCGTGCGGAGGACCGATGTCGGGAAG ACTTCGGTACATGCAAGCGCATTTTTCGTTATCCCAGTACTGTGCCTGAC CTCGGCATTATGTTCGCCGGTAGGAGTAATGGTCACGGTCTGGAAGGATT CGTTGATGCCGATTAGGCGGAAGATGTCGAGGACCGAAAGTCCACAACAG GATACGTTTTCAAGCTGAACGATGGTGCGATAAGTTCGTGCTCTAGGAAG CAACAGTTAGTCACGTAGTCCAGTACAGAGGCAGAGTACGTTGCTGCAGG AGAAGCGGGAAAGGAGAGGGTATATCTTAGGGAGTTACTAGGATCGATAG GTTTCGGATGCAGGGGGAACACGACATTGTTTGAGGACAATAAATCAGTT ATTAATATTAGTAAGGGATCTGGCTCACATTCCAGGACAAAGCACATCGG AGTGCGCTGGCACGGAATTCGAGAGTGGATTCGGGAAGGACTATTGACAT TGAAACGCGTGCAGACCAGCGATCAACTTGCTGACATTTTAACGAAAGGA CTAAGCAGAGTACAGTTTCAGACACTGAGAAATTTACTCGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig34372:400..1441-

>mRNA_H-paniculata_contig34372.9173.1 ID=mRNA_H-paniculata_contig34372.9173.1|Name=mRNA_H-paniculata_contig34372.9173.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig34372:400..1441- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTAGGATCACTCATGTACGCCTCGACAAGAACTAGACCTGATATAGC
ATACGCGGTGCACAAAGCAGCACGTCGTGCGGAGGACCGATGTCGGGAAG
ACTTCGGTACATGCAAGCGCATTTTTCGTTATCCCAGTACTGTGCCTGAC
CTCGGCATTATGTTCGCCGGTAGGAGTAATGGTCACGGTCTGGAAGGATT
CGTTGATGCCGATTAGATGGTAGGATCACTCATGTACGCCTCGACAAGAA
CTAGACCTGATATAGCATACGCGGTGCACAAAGCAGCACGTCGTGCGGAG
GACCGATGTCGGGAAGACTTCGGTACATGCAAGCGCATTTTTCGTTATCC
CAGTACTGTGCCTGACCTCGGCATTATGTTCGCCGGTAGGAGTAATGGTC
ACGGTCTGGAAGGATTCGTTGATGCCGATTAG
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