mRNA_H-paniculata_contig34360.9172.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34360.9172.1
Unique NamemRNA_H-paniculata_contig34360.9172.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig34360.9172.1 vs. uniprot
Match: A0A6H5JK81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK81_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 4.100e-26
Identity = 65/119 (54.62%), Postives = 77/119 (64.71%), Query Frame = 1 
Query:    7 AGLRSRLVRDASLNDLVIERLVAHAVEAAAAASSFLRNPRLTDEGYDERGFGLLHHAAAFGNVRKTEFLLQRGADPDARVGTTLETPLMVAARRGQRDHIRVAAVLLQAGCDLSATDVS 363
            AGLRSRL  D SL+D  +  L+  ++E       FL  P+L D+  + RGF L+HHAAAFGN  K EFLLQRG DPD R     ET LMVAARRGQR H+ VAA L++AG D  A D S
Sbjct: 1315 AGLRSRLAMDDSLHDRALSMLIQPSLEKNRR---FLSGPQLRDQD-EGRGFCLVHHAAAFGNANKVEFLLQRGVDPDVRARGGDETALMVAARRGQRPHLEVAAALIKAGADKLARDRS 1429
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BLAST of mRNA_H-paniculata_contig34360.9172.1 vs. uniprot
Match: D8LI60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI60_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 1.030e-25
Identity = 65/119 (54.62%), Postives = 78/119 (65.55%), Query Frame = 1 
Query:    7 AGLRSRLVRDASLNDLVIERLVAHAVEAAAAASSFLRNPRLTDEGYDERGFGLLHHAAAFGNVRKTEFLLQRGADPDARVGTTLETPLMVAARRGQRDHIRVAAVLLQAGCDLSATDVS 363
            AGLRSRL  D SL+D  +  L+  ++E       FL  P+L D+    RGF L+HHAAAFGN  K EFLLQRG DPDAR     ET LMVAARRG+R H+RVAA L++AG +  A D S
Sbjct: 1039 AGLRSRLAPDDSLHDRALSMLIQPSLEENRR---FLSKPQLRDQDVG-RGFCLVHHAAAFGNANKVEFLLQRGVDPDARARGGDETALMVAARRGKRTHLRVAAALIKAGANKLARDRS 1153
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BLAST of mRNA_H-paniculata_contig34360.9172.1 vs. uniprot
Match: A0A522CB26_9PROT (Ankyrin repeat domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A522CB26_9PROT)

HSP 1 Score: 54.3 bits (129), Expect = 2.220e-6
Identity = 32/71 (45.07%), Postives = 38/71 (53.52%), Query Frame = 1 
Query:  145 DERGFGLLHHAAAFGNVRKTEFLLQRGADPDARVGTTLETPLMVAARRGQRDHIRVAAVLLQAGCDLSATD 357
            DE G  LLH  A  G  +  E LLQ GADPD RVGTT  TPL  A R    D   +  +L +A   ++A D
Sbjct:   40 DEHGLALLHICARDGKAKAAEVLLQYGADPDIRVGTTQHTPLHYACRT---DSAPMVQLLARAKATVNAVD 107
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BLAST of mRNA_H-paniculata_contig34360.9172.1 vs. uniprot
Match: A0A6A6GBJ1_9PEZI (Palmitoyltransferase (Fragment) n=2 Tax=Elsinoe TaxID=40996 RepID=A0A6A6GBJ1_9PEZI)

HSP 1 Score: 52.4 bits (124), Expect = 2.260e-5
Identity = 32/71 (45.07%), Postives = 42/71 (59.15%), Query Frame = 1 
Query:  145 DERGFGLLHHAAAFGNVRKTEFLLQRGADPDARVGTTLETPLMVAARRGQRDHIRVAAVLLQAGCDLSATD 357
            DE+G   LH AA  G+     FLLQ GADP+A+ G  + TP++ A+R+ Q D   V  +LLQ G D   TD
Sbjct:   77 DEQGITALHWAAINGHYALCHFLLQVGADPNAKGGDAVATPVLWASRKCQLD---VVNLLLQHGADPLITD 144
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BLAST of mRNA_H-paniculata_contig34360.9172.1 vs. uniprot
Match: A0A2P8AI58_9PEZI (Palmitoyltransferase n=2 Tax=Elsinoe australis TaxID=40998 RepID=A0A2P8AI58_9PEZI)

HSP 1 Score: 52.0 bits (123), Expect = 3.100e-5
Identity = 31/71 (43.66%), Postives = 42/71 (59.15%), Query Frame = 1 
Query:  145 DERGFGLLHHAAAFGNVRKTEFLLQRGADPDARVGTTLETPLMVAARRGQRDHIRVAAVLLQAGCDLSATD 357
            DE+G   LH AA  G+     FLLQ GADP+A+ G  + TP++ A+R+ Q D   V  +LL+ G D   TD
Sbjct:   75 DEQGITALHWAAINGHYALCHFLLQTGADPNAKGGDAVATPVLWASRKCQLD---VVNLLLENGADPLITD 142
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BLAST of mRNA_H-paniculata_contig34360.9172.1 vs. uniprot
Match: A0A2T4VD12_VITXG (Uncharacterized protein n=2 Tax=Vitiosangium sp. (strain GDMCC 1.1324) TaxID=2138576 RepID=A0A2T4VD12_VITXG)

HSP 1 Score: 50.8 bits (120), Expect = 6.620e-5
Identity = 38/96 (39.58%), Postives = 51/96 (53.12%), Query Frame = 1 
Query:   61 ERLVAHAVEAAAAASSFLRNPRLTDEGYDERGFGLLHHAAAFGNVRKTEFLLQRGA--DPDARVGTTLETPLMVAARRGQRDHIRVAAVLLQAGCD 342
            E L+       A +SSFL       E  D+ G+  LH+AA   +V   + LL  GA  DP+   GTT   PLM++ARRG  D +R+   LL+AG D
Sbjct:  168 EELLRRGTNVEARSSSFL-----PFENRDDFGWHPLHYAADRRHVLLVQLLLDAGACVDPETTEGTT---PLMISARRGDEDSVRI---LLRAGAD 252
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34360.9172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JK81_9PHAE4.100e-2654.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI60_ECTSI1.030e-2554.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A522CB26_9PROT2.220e-645.07Ankyrin repeat domain-containing protein n=1 Tax=A... [more]
A0A6A6GBJ1_9PEZI2.260e-545.07Palmitoyltransferase (Fragment) n=2 Tax=Elsinoe Ta... [more]
A0A2P8AI58_9PEZI3.100e-543.66Palmitoyltransferase n=2 Tax=Elsinoe australis Tax... [more]
A0A2T4VD12_VITXG6.620e-539.58Uncharacterized protein n=2 Tax=Vitiosangium sp. (... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34360contigH-paniculata_contig34360:657..1810 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.1
Seed ortholog evalue1.9e-22
Seed eggNOG ortholog2880.D8LI60
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size363
Cds size363
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34360.9172.1prot_H-paniculata_contig34360.9172.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34360 657..1810 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930060.7205546-CDS-H-paniculata_contig34360:656..7351622930060.7205546-CDS-H-paniculata_contig34360:656..735Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34360 657..735 +
1691481130.5830734-CDS-H-paniculata_contig34360:656..7351691481130.5830734-CDS-H-paniculata_contig34360:656..735Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34360 657..735 +
1622930060.7394507-CDS-H-paniculata_contig34360:810..9321622930060.7394507-CDS-H-paniculata_contig34360:810..932Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34360 811..932 +
1691481130.5958717-CDS-H-paniculata_contig34360:810..9321691481130.5958717-CDS-H-paniculata_contig34360:810..932Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34360 811..932 +
1622930060.774448-CDS-H-paniculata_contig34360:1648..18101622930060.774448-CDS-H-paniculata_contig34360:1648..1810Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34360 1649..1810 +
1691481130.6057878-CDS-H-paniculata_contig34360:1648..18101691481130.6057878-CDS-H-paniculata_contig34360:1648..1810Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34360 1649..1810 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34360.9172.1

>prot_H-paniculata_contig34360.9172.1 ID=prot_H-paniculata_contig34360.9172.1|Name=mRNA_H-paniculata_contig34360.9172.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=121bp
MDAGLRSRLVRDASLNDLVIERLVAHAVEAAAAASSFLRNPRLTDEGYDE
RGFGLLHHAAAFGNVRKTEFLLQRGADPDARVGTTLETPLMVAARRGQRD
HIRVAAVLLQAGCDLSATDVS
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mRNA from alignment at H-paniculata_contig34360:657..1810+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34360.9172.1 ID=mRNA_H-paniculata_contig34360.9172.1|Name=mRNA_H-paniculata_contig34360.9172.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1154bp|location=Sequence derived from alignment at H-paniculata_contig34360:657..1810+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGCCGGCTTGAGATCAAGGCTTGTTCGAGACGCGTCATTGAACGA
CCTGGTAATCGAGAGGCTTGTCGCGCATGGTCAACAACAACGAGATCAGA
CGATAGCTCTCTGCCCACCGCCGCCACTTGCTCAATCTTTGTCGCCGTCA
GCAGCGGTGGAGGCGGCGGCCGCTGCATCATCGTTTTTGCGTAATCCTCG
GCTGACAGATGAAGGTTACGACGAGCGCGGATTCGGACTGTTGCACCATG
CTGCCGCTTTCGGGAACGTTCGCAAGGTGTGGTGCAGTATGTGTTCATGC
CGAGCGTGGGGAGTGGGAGGAGGGGAGGAGGGGGGGGTTGGGGGGGGAGG
GGGGGGGAGGCAATACGAACGTCCAATTTGCAACCCATTTGAGACATAAC
ATAGCTGACACAAATATATTCATTACGTGTCTGTGGTGCGCATTCATTGT
TGTGTGGAGGGTCTCGTAGTTGTATACAGAGTAGAGGTGCGGCGGGCGGT
AAATGATGTCAGAAGAGACAGCTCTGGGGTTCGATGTAGTATTCTCTGCC
GTGGGTATTTTTGCGTGCCAGTTCTTGATCCGTAGTGGTGCTGCCGCAGC
AGCAACAGAAGCTTGGTGATCCGTCAATGAGAGATAAAGGTTCGGTAGAA
GCGACAACTAGACCTCTGTCGTTGTGCTTTAGCTGCGTTTCCCCTGTCAA
CCGTATGCCTGTCCCATCCGTTTCCTCCTTTCGCCCCTTCTTTCGTCATG
TCTCTCATCAGTTTCTTGTGCATTCCCCTCTCCACCTCCCTATCTCCCTG
TGTGCTTGTCTTCCTGTGTACAAGTCTTCTTCCTATGTGCTTGTCTATCT
GCTTGTTTTCCGCTGTGTATCTCTACCTCTCTGCCCCCTTATGTCTTTGT
CTCCCTCTCTGCTTTTTCTGTCTCCATGTCTCTGTCCCCTCGCCCCCCCG
CTGTGTCACTATCTTCCCTCTCCATCTTTTCGATGTTGCCAGACGGAATT
TCTGTTGCAGCGCGGTGCCGATCCTGATGCTCGAGTGGGTACCACACTCG
AGACTCCGTTAATGGTGGCGGCACGCAGGGGTCAACGTGACCATATCCGG
GTGGCTGCTGTTCTGCTCCAAGCCGGCTGCGATCTGTCGGCGACTGATGT
GAGT
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Coding sequence (CDS) from alignment at H-paniculata_contig34360:657..1810+

>mRNA_H-paniculata_contig34360.9172.1 ID=mRNA_H-paniculata_contig34360.9172.1|Name=mRNA_H-paniculata_contig34360.9172.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at H-paniculata_contig34360:657..1810+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGCCGGCTTGAGATCAAGGCTTGTTCGAGACGCGTCATTGAACGA
CCTGGTAATCGAGAGGCTTGTCGCGCATGATGGACGCCGGCTTGAGATCA
AGGCTTGTTCGAGACGCGTCATTGAACGACCTGGTAATCGAGAGGCTTGT
CGCGCATGCGGTGGAGGCGGCGGCCGCTGCATCATCGTTTTTGCGTAATC
CTCGGCTGACAGATGAAGGTTACGACGAGCGCGGATTCGGACTGTTGCAC
CATGCTGCCGCTTTCGGGAACGTTCGCAAGCGGTGGAGGCGGCGGCCGCT
GCATCATCGTTTTTGCGTAATCCTCGGCTGACAGATGAAGGTTACGACGA
GCGCGGATTCGGACTGTTGCACCATGCTGCCGCTTTCGGGAACGTTCGCA
AGACGGAATTTCTGTTGCAGCGCGGTGCCGATCCTGATGCTCGAGTGGGT
ACCACACTCGAGACTCCGTTAATGGTGGCGGCACGCAGGGGTCAACGTGA
CCATATCCGGGTGGCTGCTGTTCTGCTCCAAGCCGGCTGCGATCTGTCGG
CGACTGATGTGAGTACGGAATTTCTGTTGCAGCGCGGTGCCGATCCTGAT
GCTCGAGTGGGTACCACACTCGAGACTCCGTTAATGGTGGCGGCACGCAG
GGGTCAACGTGACCATATCCGGGTGGCTGCTGTTCTGCTCCAAGCCGGCT
GCGATCTGTCGGCGACTGATGTGAGT
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