mRNA_H-paniculata_contig3419.9132.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3419.9132.1
Unique NamemRNA_H-paniculata_contig3419.9132.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3419.9132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3419contigH-paniculata_contig3419:5080..5623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size545
Cds size360
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930055.5288231-UTR-H-paniculata_contig3419:5079..52631622930055.5288231-UTR-H-paniculata_contig3419:5079..5263Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3419 5080..5263 +
1691481128.3613567-UTR-H-paniculata_contig3419:5079..52631691481128.3613567-UTR-H-paniculata_contig3419:5079..5263Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3419 5080..5263 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930055.546749-CDS-H-paniculata_contig3419:5263..56231622930055.546749-CDS-H-paniculata_contig3419:5263..5623Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3419 5264..5623 +
1691481128.3699017-CDS-H-paniculata_contig3419:5263..56231691481128.3699017-CDS-H-paniculata_contig3419:5263..5623Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3419 5264..5623 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3419.9132.1prot_H-paniculata_contig3419.9132.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3419 5264..5623 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3419.9132.1

>prot_H-paniculata_contig3419.9132.1 ID=prot_H-paniculata_contig3419.9132.1|Name=mRNA_H-paniculata_contig3419.9132.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp
MGNIEKGLAISRRGEGNYRSLLVEPHLGVCQKYLRRVERIELKSCFRGWA
AAGPQWMLAPRLAHCPVAAANAASSTSSSTAARARSSLLVLPRPGVLGCP
VGIWKRIESPTRRKHQAAVL
back to top

mRNA from alignment at H-paniculata_contig3419:5080..5623+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3419.9132.1 ID=mRNA_H-paniculata_contig3419.9132.1|Name=mRNA_H-paniculata_contig3419.9132.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=544bp|location=Sequence derived from alignment at H-paniculata_contig3419:5080..5623+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTCACGCGAAGCTCAGCAACAGCGCCAGGAAATGCAGCTGCAAAAGGCA
CGGTGATGCCAAGAAAAGCACAACGACTACAAGAAATGGGACGTCGCTAG
CTAGACATAGATTCTGCGTGATTTCGCGCAGGGCAAGCGAAAAATGCAGT
CTACAGCGTGCGCGAGCGCTCGGATCTCGCAGCAATGGGAAACATAGAGA
AGGGTCTTGCTATTTCCAGGCGAGGAGAGGGGAATTATCGTAGTCTATTG
GTTGAGCCACACCTCGGCGTGTGTCAGAAGTACCTTCGGCGAGTAGAGAG
AATCGAGCTAAAATCTTGCTTTCGCGGGTGGGCGGCAGCCGGGCCACAGT
GGATGTTGGCGCCGCGGCTAGCTCACTGCCCCGTAGCTGCTGCGAACGCC
GCATCATCAACATCATCATCTACTGCTGCTCGTGCTCGCAGTAGCTTGTT
GGTGTTGCCTCGGCCGGGGGTGTTGGGCTGCCCCGTCGGGATATGGAAGA
GAATAGAAAGTCCAACGCGGCGAAAGCATCAAGCGGCAGTTCTT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig3419:5080..5623+

>mRNA_H-paniculata_contig3419.9132.1 ID=mRNA_H-paniculata_contig3419.9132.1|Name=mRNA_H-paniculata_contig3419.9132.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at H-paniculata_contig3419:5080..5623+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAAACATAGAGAAGGGTCTTGCTATTTCCAGGCGAGGAGAGGGGAA
TTATCGTAGTCTATTGGTTGAGCCACACCTCGGCGTGTGTCAGAAGTACC
TTCGGCGAGTAGAGAGAATCGAGCTAAAATCTTGCTTTCGCGGGTGGGCG
GCAGCCGGGCCACAGTGGATGTTGGCGCCGCGGCTAGCTCACTGCCCCGT
AGCTGCTGCGAACGCCGCATCATCAACATCATCATCTACTGCTGCTCGTG
CTCGCAGTAGCTTGTTGGTGTTGCCTCGGCCGGGGGTGTTGGGCTGCCCC
GTCGGGATATGGAAGAGAATAGAAAGTCCAACGCGGCGAAAGCATCAAGC
GGCAGTTCTTATGGGAAACATAGAGAAGGGTCTTGCTATTTCCAGGCGAG
GAGAGGGGAATTATCGTAGTCTATTGGTTGAGCCACACCTCGGCGTGTGT
CAGAAGTACCTTCGGCGAGTAGAGAGAATCGAGCTAAAATCTTGCTTTCG
CGGGTGGGCGGCAGCCGGGCCACAGTGGATGTTGGCGCCGCGGCTAGCTC
ACTGCCCCGTAGCTGCTGCGAACGCCGCATCATCAACATCATCATCTACT
GCTGCTCGTGCTCGCAGTAGCTTGTTGGTGTTGCCTCGGCCGGGGGTGTT
GGGCTGCCCCGTCGGGATATGGAAGAGAATAGAAAGTCCAACGCGGCGAA
AGCATCAAGCGGCAGTTCTT
back to top