mRNA_H-paniculata_contig3418.9127.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3418.9127.1
Unique NamemRNA_H-paniculata_contig3418.9127.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig3418.9127.1 vs. uniprot
Match: D7FQ02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ02_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 6.990e-16
Identity = 45/60 (75.00%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:  547 LSSTPGASTMAGELRGGELERVQGRAADLGAAIETSQARLLEELSQVQEDFFSSFGYTVP 726
            LS+     ++AGELRGGELERV+GR ADLGAAIETSQ++LL ELSQVQEDFFSSFGY  P
Sbjct:   60 LSARVSVGSVAGELRGGELERVRGRVADLGAAIETSQSKLLRELSQVQEDFFSSFGYATP 119
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3418.9127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQ02_ECTSI6.990e-1675.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3418contigH-paniculata_contig3418:36..2914 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size896
Cds size894
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930055.0487638-CDS-H-paniculata_contig3418:35..6921622930055.0487638-CDS-H-paniculata_contig3418:35..692Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3418 36..692 +
1691481128.1710687-CDS-H-paniculata_contig3418:35..6921691481128.1710687-CDS-H-paniculata_contig3418:35..692Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3418 36..692 +
1622930055.0662181-CDS-H-paniculata_contig3418:2675..29121622930055.0662181-CDS-H-paniculata_contig3418:2675..2912Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3418 2676..2912 +
1691481128.1835284-CDS-H-paniculata_contig3418:2675..29121691481128.1835284-CDS-H-paniculata_contig3418:2675..2912Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3418 2676..2912 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3418.9127.1prot_H-paniculata_contig3418.9127.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3418 36..2912 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3418.9127.1

>prot_H-paniculata_contig3418.9127.1 ID=prot_H-paniculata_contig3418.9127.1|Name=mRNA_H-paniculata_contig3418.9127.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=298bp
RGPGDPPPPPFLGHSLLAATPRTSTEAAAAVAAGPTWQESEPAAYDDRKI
GATRPRTSGSRSRGRRPGGLPRSTVAISGGGSSGGGGGAEEKGIRLLPLM
ARRKTTATAATSKVAKGGRRSCGSTNDGTARAVGSGSGGDDGHDSSPSKR
GGGKGGQEVRGSRSRGAAERSSGSRRDQSPMRLSSTPGASTMAGELRGGE
LERVQGRAADLGAAIETSQARLLEELSQVQEDFFSSFGYTVPPSSPASYE
HGHRPFAAGGLSATPGAFALAGSTGGDLSSTPAAVTAADRTDDSRSSS
back to top

mRNA from alignment at H-paniculata_contig3418:36..2914+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3418.9127.1 ID=mRNA_H-paniculata_contig3418.9127.1|Name=mRNA_H-paniculata_contig3418.9127.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2879bp|location=Sequence derived from alignment at H-paniculata_contig3418:36..2914+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCGGACCCGGGGACCCCCCCCCCCCCCCTTTCCTGGGCCACTCTCTCCT
GGCCGCCACCCCGCGCACTTCTACGGAGGCGGCGGCTGCGGTCGCGGCAG
GGCCAACATGGCAAGAGTCAGAGCCAGCGGCCTATGATGATAGGAAAATC
GGCGCGACACGACCCAGAACAAGCGGTAGTCGCAGTCGCGGACGAAGGCC
GGGAGGGCTGCCAAGGTCGACTGTTGCTATATCTGGCGGCGGCAGTAGCG
GCGGCGGCGGCGGTGCTGAGGAAAAGGGGATACGGTTGTTGCCTTTAATG
GCGCGAAGGAAAACCACGGCAACGGCGGCAACGTCGAAGGTAGCCAAGGG
GGGGCGACGTAGTTGTGGTAGCACTAACGATGGCACCGCTAGAGCGGTTG
GTAGCGGTAGCGGCGGCGACGACGGTCATGATTCAAGCCCCAGCAAACGA
GGAGGTGGAAAAGGAGGGCAGGAGGTCAGGGGATCGCGATCAAGAGGCGC
GGCGGAAAGATCAAGTGGGAGCAGAAGAGATCAATCGCCGATGCGCTTGT
CTTCGACGCCGGGCGCATCTACCATGGCCGGGGAGTTGAGGGGCGGTGAG
CTAGAGAGGGTCCAAGGGCGGGCGGCTGATCTAGGCGCAGCAATAGAGAC
GTCGCAGGTAAATTTCCCTAGCTGCCTGCTCTTGCATGTTAGGCGGTTTG
TTGCGTGTATGGATTATTACTCTCTGCTGTCGGAATTGTCCCTCCAGTAT
CACCATCTGGTCAGATGTGAGACGCATTACATACCTGTGCAAAAACGGCT
GTAAGTCTTTTTGGCGGAGGATTTTCTCGCTAAAAAATCGTTCTATTTTG
GAGGTTCTTGCGTGCTTGATTGCACACAGGTTTTTTTCTTGTTTGAAATT
TTAATTTTCCTGCTGGCGCTGTGTTGGTTACGGCGTTTCGTTCACGTAGT
TGTGTGTTGTCAACTCTGCAGCATTCTACTGCGTATTTACTCAGATCACA
ACGCTCGCACACCAAAAGGGCTCAATTACTGCAGACGTTAGTCAAGCACA
GGGAAGAAAAGGCCAACTGAACACTCTACACCGAAACGATGATGCTGTCG
CTTGATACGGCACTTGGAAGCGAACCTTCGAGTACCGTCACTATCTAGTT
CGGTTGTTGTGGCTCTCTCTCGCCCAGGTTAGCCTCGTGAATTTAGCATG
CCGTTGTCCAGATCATGCGTGGAGTCACCTACTACATAAATGATCACATG
GTTTATGCTCTCGTCTCGTGAGAGTAATATCATCCTACCTTACCACGGCT
AGCTTTCTGCCTTGCAGATCAAAATCTGTACAGGTGCAAAGTACTTGAAA
TAAAGCCTTTTTTTTTCGTCGCCGATCCGTTCTCTTATCGGTACTCCGGT
TCGAAGCTGGGAGTGTAATGCGTCGGTTCTTGCCTATTATTTTCACGCGG
TGGGGGCAGTAGTCCCACGCACTCGTCAACATTGGAGTTGACAGCGACAT
GCTAAGGGACTATTCTTCTCTCTATAGTGGAATATGACTCATAGGCACTT
ATCGTATATACCCATAATATATCCAGAATAACAAGCACCTCATTGATTAA
TCAATGAGCTACTTCTGTTCCAAGGGTGTATTTTGGAAAAATGGCGCCTC
CTGAATCATGGCACGTATACACTGTTGGAGTATGATGCACAGTTATTGGT
TTTGCTGCCCCTTACTATTGATGTCACTGATATTTTGACGAGTTGTCGGC
ATTGTTTAAGGGCAACCTGTAGACTTTTTCCTCTCTCTACGCTAACCGTA
CGCATTAGCGACAAGCGTCTACAGGCTACCCTTGAAGTAGGTGTATACCT
ATGTCGAGTTCGGACGTCTATACAGATAGTTTTTTTCCTCCCTTTTCTGC
AGTTATTTTTCAGGTGGGATTCATGCCCGCCTCCGTTCTTACTACACCAT
CTGTCAACTACTACGATACACTATACAATCGGCCTGGTGATATGAGCAAG
TTGTTCTTTTCGATAAGGTTCAACATTTTTTTTTTAATTCCTACATTCAC
CACATTATCAGCAGTTTTAGTCGGTGAATGTGGGACGACAATTTGAGCGC
AACTCTTGTGCCAAATTCATTGAAATATTGAAAAGCAAATTGTACGTCAA
AGTTTTGAATAGCTCCTGATTTTTGCAATTATTGGGTCATTGTTGTGGCT
ATTGTCGTCGTCGTCGTCGTCACCGTCGTCATTTTGTTGTTGTTATTATG
ATCGTCGTAGTCGACGTCGTTTTACCCGTTCAATGTACCTTGTAGTGTCG
TTATTCATCTGTGTACTTTGTACCCTCTTCTGTCCTCTATCTTACCCCCT
CGTTGGTCCTCGTTTTGCTGATAAGTCTGCTCAGCTTTTACTTCAGTTGG
GCTACATAACCTCACTTAACATCCATTACATGGGTACAACGAAGTTACTG
GACTGCTCTGGACTGTACTGTTATATACGTACCGTATACTGTGGCAAGTA
CAAAATCGGGTTGACTTGACTTGTGAATGGGGATTCATGGGTCAATTGTA
TCCCACCCTCCCGCCCACCCCCATTACCCCACACCTCGTTTCCTTTCCCT
GTTTCCCCACCCTATTTCTTCTATACCATCGTATGTACAGGCCAGGCTGC
TGGAGGAGCTCTCGCAGGTCCAAGAGGACTTTTTCTCCAGCTTCGGCTAC
ACCGTACCCCCTTCGTCGCCCGCCTCCTACGAACACGGGCACAGACCGTT
CGCTGCCGGAGGCCTTTCGGCAACTCCGGGTGCCTTTGCCTTGGCCGGGT
CGACCGGTGGCGACCTCTCCTCCACCCCTGCCGCCGTCACCGCAGCCGAC
AGGACCGACGACAGCCGCTCCTCGTCGCG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig3418:36..2914+

>mRNA_H-paniculata_contig3418.9127.1 ID=mRNA_H-paniculata_contig3418.9127.1|Name=mRNA_H-paniculata_contig3418.9127.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1788bp|location=Sequence derived from alignment at H-paniculata_contig3418:36..2914+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCGGACCCGGGGACCCCCCCCCCCCCCCTTTCCTGGGCCACTCTCTCCT
GGCCGCCACCCCGCGCACTTCTACGGAGGCGGCGGCTGCGGTCGCGGCAG
GGCCAACATGGCAAGAGTCAGAGCCAGCGGCCTATGATGATAGGAAAATC
GGCGCGACACGACCCAGAACAAGCGGTAGTCGCAGTCGCGGACGAAGGCC
GGGAGGGCTGCCAAGGTCGACTGTTGCTATATCTGGCGGCGGCAGTAGCG
GCGGCGGCGGCGGTGCTGAGGAAAAGGGGATACGGTTGTTGCCTTTAATG
GCGCGAAGGAAAACCACGGCAACGGCGGCAACGTCGAAGGTAGCCAAGGG
GGGGCGACGTAGTTGTGGTAGCACTAACGATGGCACCGCTAGAGCGGTTG
GTAGCGGTAGCGGCGGCGACGACGGTCATGATTCAAGCCCCAGCAAACGA
GGAGGTGGAAAAGGAGGGCAGGAGGTCAGGGGATCGCGATCAAGAGGCGC
GGCGGAAAGATCAAGTGGGAGCAGAAGAGATCAATCGCCGATGCGCTTGT
CTTCGACGCCGGGCGCATCTACCATGGCCGGGGAGTTGAGGGGCGGTGAG
CTAGAGAGGGTCCAAGGGCGGGCGGCTGATCTAGGCGCAGCAATAGAGAC
GTCGCAGCGCGGACCCGGGGACCCCCCCCCCCCCCCTTTCCTGGGCCACT
CTCTCCTGGCCGCCACCCCGCGCACTTCTACGGAGGCGGCGGCTGCGGTC
GCGGCAGGGCCAACATGGCAAGAGTCAGAGCCAGCGGCCTATGATGATAG
GAAAATCGGCGCGACACGACCCAGAACAAGCGGTAGTCGCAGTCGCGGAC
GAAGGCCGGGAGGGCTGCCAAGGTCGACTGTTGCTATATCTGGCGGCGGC
AGTAGCGGCGGCGGCGGCGGTGCTGAGGAAAAGGGGATACGGTTGTTGCC
TTTAATGGCGCGAAGGAAAACCACGGCAACGGCGGCAACGTCGAAGGTAG
CCAAGGGGGGGCGACGTAGTTGTGGTAGCACTAACGATGGCACCGCTAGA
GCGGTTGGTAGCGGTAGCGGCGGCGACGACGGTCATGATTCAAGCCCCAG
CAAACGAGGAGGTGGAAAAGGAGGGCAGGAGGTCAGGGGATCGCGATCAA
GAGGCGCGGCGGAAAGATCAAGTGGGAGCAGAAGAGATCAATCGCCGATG
CGCTTGTCTTCGACGCCGGGCGCATCTACCATGGCCGGGGAGTTGAGGGG
CGGTGAGCTAGAGAGGGTCCAAGGGCGGGCGGCTGATCTAGGCGCAGCAA
TAGAGACGTCGCAGGCCAGGCTGCTGGAGGAGCTCTCGCAGGTCCAAGAG
GACTTTTTCTCCAGCTTCGGCTACACCGTACCCCCTTCGTCGCCCGCCTC
CTACGAACACGGGCACAGACCGTTCGCTGCCGGAGGCCTTTCGGCAACTC
CGGGTGCCTTTGCCTTGGCCGGGTCGACCGGTGGCGACCTCTCCTCCACC
CCTGCCGCCGTCACCGCAGCCGACAGGACCGACGACAGCCGCTCCTCGTC
GGCCAGGCTGCTGGAGGAGCTCTCGCAGGTCCAAGAGGACTTTTTCTCCA
GCTTCGGCTACACCGTACCCCCTTCGTCGCCCGCCTCCTACGAACACGGG
CACAGACCGTTCGCTGCCGGAGGCCTTTCGGCAACTCCGGGTGCCTTTGC
CTTGGCCGGGTCGACCGGTGGCGACCTCTCCTCCACCCCTGCCGCCGTCA
CCGCAGCCGACAGGACCGACGACAGCCGCTCCTCGTCG
back to top