mRNA_H-paniculata_contig3416.9124.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3416.9124.1 vs. uniprot
Match: D7FNN0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNN0_ECTSI) HSP 1 Score: 407 bits (1046), Expect = 1.070e-130 Identity = 276/593 (46.54%), Postives = 352/593 (59.36%), Query Frame = 1
Query: 7 SKNGFDFQAWAAHGVPFLSREQEAHIQRKLLERRAREDEAAAVAAAIAEAGSSETAS----------GEQAERPPHVTRDGTTLASLPLDEKTMILDARKKVEALLEEVSSADEYVERTLTLDPMNGRSRWLVYEFVGTQYPGVKLRNLTGPRNVLGIQIKTV-SPDKEQRELEEMQMRDAAAAKEQEDIKGAAGFRRVIDVLSKAGKPVIAHNGLLDLMHTHDKFVGPLPDGHEEGTQALHTLFPSLFDNKVVMSSAVDAGLAFPQTVPGKGFDWLRETQ-APT-------KGADNASGSTPCDSTAAEAARNEKTQKVENTDAGADNEDEGSAKDKMEVESGHVKNSAGEQPTN-GSSSNSSNSSKSGNYVSRAMWEASFAPGFEERYADGGQEHEAGYDAYLTGCCFAAAATLGLGVTVEELKGMGSGDGADGGREVPEALRPVQNKLPLWKIMAGQKLRLPGPTPAPDLTKLVKVSGFPKAAQTDAIVRTLTAAMPTNGEGEVRPMWFHWIDDTSGVAEFESADAARMLVKVADDATVAAAAVXXXXDMDAVTDGDGDDKPVGGVADPLNLKLEDMVLVAMGEPATGGG 1725
SK+GFDFQAWA+HGVPFLSR +E ++ KL R RE A VAA EA + E P H RDGTT+ SL EK M+ DA KKVEALL E SS EYV++++ L+PMNGR RWL+YEFVG+ VKL NL GP ++I+TV D E+ EE ++R A++ D++ A GFRRV+D +SKAGKPVI HNGLLDL+HTHDKFVGP+P ++GT+ALH+L P LFD+KVVM+ A+ AG+ P+TV G+ WLRE AP +GA+ +G P + A E + + T V T G N G +K E P G+ + +S +R W+A APGFEERY DGG+EHEAG+DAYLTGCCFAAAAT+GLGV ++ELK M SG+ E P AL QN LPL+K++ GQ++ LPGP P DL++ V VSGFP AA+TDA++ ++ A +G V WFHW+DDTSGV + SA+ A L++ A A XXXX GDG G ADP L L D+ LV M GG
Sbjct: 111 SKHGFDFQAWASHGVPFLSRAEEEVVEGKLRRRWERE---ATVAAERKEAVAXXXXXXXXXXXXXXXAAAVEGPVHTARDGTTIESLQEPEKGMVKDALKKVEALLAESSSGGEYVQKSVKLEPMNGRQRWLMYEFVGSSTADVKLSNLPGPAYARPMEIRTVCKDDPEKHAEEEAKLRADEQARQLGDLRRAVGFRRVVDEISKAGKPVICHNGLLDLLHTHDKFVGPIPVDMDDGTRALHSLLPRLFDSKVVMAKAMAAGMKLPRTVLGEAHQWLREKYPAPXXXXXXLEEGAE--AGMEPAEGAAEEGQQVDGTAVVATTSGGEAN---GDSKTNGEGXXXXXXXXXAVPPVEAGAEAAASERDVEALERARRGWDAVLAPGFEERYKDGGREHEAGFDAYLTGCCFAAAATVGLGVGLDELKRMASGE------ETPAALGSAQNVLPLYKVVGGQQVCLPGPAPKVDLSRYVHVSGFPSAARTDAVLASIKAV-----DGCV-DSWFHWMDDTSGVVDCTSAEGAEALLRAAA-AXXXXXXXXXXXXXGTPAAGDGGS---GEEADPCRLSLGDLKLVQMEHALLNGG 679
BLAST of mRNA_H-paniculata_contig3416.9124.1 vs. uniprot
Match: H9G9S4_ANOCA (Poly(A)-specific ribonuclease PARN n=2 Tax=Anolis carolinensis TaxID=28377 RepID=H9G9S4_ANOCA) HSP 1 Score: 95.5 bits (236), Expect = 6.180e-17 Identity = 75/254 (29.53%), Postives = 121/254 (47.64%), Query Frame = 1
Query: 7 SKNGFDFQAWAAHGVPFLSREQEAHIQRKLLERRAREDEAAAVAAAIAEAGSSETASGEQAERPPHVTRDGTTLASLPLDEKTMILDARKKVEALLEEVSSADEYVERTLTLDPMNGRSRWLVYEFVGTQYPGVKLRNLTGPRNVLGIQIKTVSPDKEQR--------ELEEMQMRDAAAAKEQEDIKGAAGFRRVIDVLSKAGKPVIAHNGLLDLMHTHDKFVGPLPDGHEEGTQALHTLFPSLFDNKVVMSS 744
+ GFDF +G+P+L++E+E +Q + E+R++ GS AS + P ++P D+KT I +V+ LL+ SA +L L+P G R L+Y+ + +YP GI ++T+ +K++R E AKEQE++K A GF RVI ++ +GK V+ HN LLD+MHT +F PLP+ E + +FP L D K++ ++
Sbjct: 117 ANQGFDFNKVFRNGIPYLNQEEERQLQEQYEEKRSQ----------AGRVGSLSFASPNAQSKCP---------VTIPEDQKTFIDKVVDRVDTLLQNEESA------SLELEPCTGFQRKLIYQTLSWKYPK-------------GIHVETLETEKKERYIIVSKVDEXXXXXXXXXXXAKEQEELKDAVGFSRVIHAMANSGKLVVGHNMLLDVMHTIHQFYCPLPEDLGEFKELTTCVFPRLLDTKLMATT 332
BLAST of mRNA_H-paniculata_contig3416.9124.1 vs. uniprot
Match: UPI000D6A12D4 (poly(A)-specific ribonuclease PARN isoform X2 n=1 Tax=Python bivittatus TaxID=176946 RepID=UPI000D6A12D4) HSP 1 Score: 94.0 bits (232), Expect = 8.030e-17 Identity = 72/247 (29.15%), Postives = 126/247 (51.01%), Query Frame = 1
Query: 7 SKNGFDFQAWAAHGVPFLSREQEAHIQRKLLERRAREDEAAAVAAAIAEAGSSETASGEQAERPPHVTRDGTTLASLPLDEKTMILDARKKVEALLEEVSSADEYVERTLTLDPMNGRSRWLVYEFVGTQYP-GVKLRNLTGPRNVLGIQIKTVSPDKEQRELEEMQMRDAAAAKEQEDIKGAAGFRRVIDVLSKAGKPVIAHNGLLDLMHTHDKFVGPLPDGHEEGTQALHTLFPSLFDNKVVMSS 744
+ GFDF +G+P+L++E+E ++ + E+R++ + A+ S + G +RP +++P D+K I +++E LL+ S + + L+P G R L+Y+ + +YP G+ + L + + I V ++ +R ++ Q AKEQE++K A GF RVI L+ +GK V+ HN LLD+MHT +F LP+ E + +FP L D K++ S+
Sbjct: 56 ANQGFDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGLGAL---------SYMSPGTN-KRP----------SAIPEDQKKFIEKVIERIEGLLQNEESTN------IQLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYMVISKVDEEERKRRGQQKQ------AKEQEELKDAVGFSRVIHALANSGKLVVGHNMLLDVMHTIHQFYCSLPEDFSEFKELATCVFPRLLDTKLMAST 270
BLAST of mRNA_H-paniculata_contig3416.9124.1 vs. uniprot
Match: UPI0007DB7CE4 (poly(A)-specific ribonuclease PARN n=1 Tax=Anolis carolinensis TaxID=28377 RepID=UPI0007DB7CE4) HSP 1 Score: 95.5 bits (236), Expect = 8.340e-17 Identity = 75/254 (29.53%), Postives = 121/254 (47.64%), Query Frame = 1
Query: 7 SKNGFDFQAWAAHGVPFLSREQEAHIQRKLLERRAREDEAAAVAAAIAEAGSSETASGEQAERPPHVTRDGTTLASLPLDEKTMILDARKKVEALLEEVSSADEYVERTLTLDPMNGRSRWLVYEFVGTQYPGVKLRNLTGPRNVLGIQIKTVSPDKEQR--------ELEEMQMRDAAAAKEQEDIKGAAGFRRVIDVLSKAGKPVIAHNGLLDLMHTHDKFVGPLPDGHEEGTQALHTLFPSLFDNKVVMSS 744
+ GFDF +G+P+L++E+E +Q + E+R++ GS AS + P ++P D+KT I +V+ LL+ SA +L L+P G R L+Y+ + +YP GI ++T+ +K++R E AKEQE++K A GF RVI ++ +GK V+ HN LLD+MHT +F PLP+ E + +FP L D K++ ++
Sbjct: 117 ANQGFDFNKVFRNGIPYLNQEEERQLQEQYEEKRSQ----------AGRVGSLSFASPNAQSKCP---------VTIPEDQKTFIDKVVDRVDTLLQNEESA------SLELEPCTGFQRKLIYQTLSWKYPK-------------GIHVETLETEKKERYIIVSKVDEXXXXXXXXXXXAKEQEELKDAVGFSRVIHAMANSGKLVVGHNMLLDVMHTIHQFYCPLPEDLGEFKELTTCVFPRLLDTKLMATT 332
BLAST of mRNA_H-paniculata_contig3416.9124.1 vs. uniprot
Match: UPI001FDAA73E (poly(A)-specific ribonuclease PARN isoform X3 n=1 Tax=Phacochoerus africanus TaxID=41426 RepID=UPI001FDAA73E) HSP 1 Score: 94.0 bits (232), Expect = 1.180e-16 Identity = 73/254 (28.74%), Postives = 125/254 (49.21%), Query Frame = 1
Query: 7 SKNGFDFQAWAAHGVPFLSREQEAHIQRKLLERRAREDEAAAVAAAIAEAGSSETASGEQAERPPHVTRDGTTLASLPLDEKTMILDARKKVEALLEEVSSADEYVERTLTLDPMNGRSRWLVYEFVGTQYPGVKLRNLTGPRNVLGIQIKTVSPDKEQRELEEMQMRDAAA--------AKEQEDIKGAAGFRRVIDVLSKAGKPVIAHNGLLDLMHTHDKFVGPLPDGHEEGTQALHTLFPSLFDNKVVMSS 744
+ GFDF +G+P+L++E+E ++ + E+R + + A A++ A P+ ++ ++P D+K I +K+E LL+ + R L L+P G R L+Y+ + +YP GI ++T+ +K++R + ++ + AKEQE++K A GF RVI ++ +GK VI HN LLD+MHT +F PLP E + +FP L D K++ S+
Sbjct: 117 ASQGFDFNKVFRNGIPYLNQEEERQLREQYDEKRLQSNGAGALSYAS-----------------PNTSK---CPVAIPEDQKKFIDQVVEKIEDLLQSEEN------RNLDLEPCTGFQRKLIYQTLSWKYPK-------------GIHVETLETEKKERYIVISKVDEEXXXXXXXXXXAKEQEELKDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTKLMAST 331
BLAST of mRNA_H-paniculata_contig3416.9124.1 vs. uniprot
Match: UPI000441C128 (poly(A)-specific ribonuclease PARN isoform X3 n=2 Tax=Python bivittatus TaxID=176946 RepID=UPI000441C128) HSP 1 Score: 94.0 bits (232), Expect = 1.610e-16 Identity = 72/247 (29.15%), Postives = 126/247 (51.01%), Query Frame = 1
Query: 7 SKNGFDFQAWAAHGVPFLSREQEAHIQRKLLERRAREDEAAAVAAAIAEAGSSETASGEQAERPPHVTRDGTTLASLPLDEKTMILDARKKVEALLEEVSSADEYVERTLTLDPMNGRSRWLVYEFVGTQYP-GVKLRNLTGPRNVLGIQIKTVSPDKEQRELEEMQMRDAAAAKEQEDIKGAAGFRRVIDVLSKAGKPVIAHNGLLDLMHTHDKFVGPLPDGHEEGTQALHTLFPSLFDNKVVMSS 744
+ GFDF +G+P+L++E+E ++ + E+R++ + A+ S + G +RP +++P D+K I +++E LL+ S + + L+P G R L+Y+ + +YP G+ + L + + I V ++ +R ++ Q AKEQE++K A GF RVI L+ +GK V+ HN LLD+MHT +F LP+ E + +FP L D K++ S+
Sbjct: 56 ANQGFDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGLGAL---------SYMSPGTN-KRP----------SAIPEDQKKFIEKVIERIEGLLQNEESTN------IQLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYMVISKVDEEERKRRGQQKQ------AKEQEELKDAVGFSRVIHALANSGKLVVGHNMLLDVMHTIHQFYCSLPEDFSEFKELATCVFPRLLDTKLMAST 270
BLAST of mRNA_H-paniculata_contig3416.9124.1 vs. uniprot
Match: UPI001C4AC972 (poly(A)-specific ribonuclease PARN isoform X1 n=3 Tax=Sceloporus undulatus TaxID=8520 RepID=UPI001C4AC972) HSP 1 Score: 93.6 bits (231), Expect = 2.580e-16 Identity = 70/255 (27.45%), Postives = 126/255 (49.41%), Query Frame = 1
Query: 7 SKNGFDFQAWAAHGVPFLSREQEAHIQRKLLERRAREDEAAAVAAAIAEAGSSETASGEQAERPPHVTRDGTTL-ASLPLDEKTMILDARKKVEALLEEVSSADEYVERTLTLDPMNGRSRWLVYEFVGTQYPGVKLRNLTGPRNVLGIQIKTVSPDKEQR--------ELEEMQMRDAAAAKEQEDIKGAAGFRRVIDVLSKAGKPVIAHNGLLDLMHTHDKFVGPLPDGHEEGTQALHTLFPSLFDNKVVMSS 744
+ GFDF +G+P+L++E+E ++ + E+R++ + ++++ +V+ + ++ ++P D+K I ++V+ALL+ S + L L+P G R L+Y+ + +YP GI ++T+ +K++R E AKEQE++K A GF RVI L+ +GK V+ HN LLD+MHT +F PLP+ E + +FP L D K++ ++
Sbjct: 117 ANQGFDFNKVFRNGIPYLNQEEERQLREQYNEKRSQANRVSSLS---------------------YVSPNASSCPVTVPEDQKKFIDKVVERVDALLQNEESTN------LELEPCTGFQRKLIYQTLSWKYPK-------------GIHVETLETEKKERYIIVSKVDEXXXXXXXXXXXAKEQEELKDAVGFSRVIHALANSGKLVVGHNMLLDVMHTIHQFYCPLPEDLSEFKELTTCVFPRLLDTKLMATT 331
BLAST of mRNA_H-paniculata_contig3416.9124.1 vs. uniprot
Match: A0A6P9E1Y2_PANGU (Poly(A)-specific ribonuclease PARN n=1 Tax=Pantherophis guttatus TaxID=94885 RepID=A0A6P9E1Y2_PANGU) HSP 1 Score: 92.8 bits (229), Expect = 4.190e-16 Identity = 72/254 (28.35%), Postives = 123/254 (48.43%), Query Frame = 1
Query: 7 SKNGFDFQAWAAHGVPFLSREQEAHIQRKLLERRAREDEAAAVAAAIAEAGSSETASGEQAERPPHVTRDGTTLASLPLDEKTMILDARKKVEALLEEVSSADEYVERTLTLDPMNGRSRWLVYEFVGTQYPGVKLRNLTGPRNVLGIQIKTVSPDKEQR--------ELEEMQMRDAAAAKEQEDIKGAAGFRRVIDVLSKAGKPVIAHNGLLDLMHTHDKFVGPLPDGHEEGTQALHTLFPSLFDNKVVMSS 744
+ GFDF +G+P+L++E+E ++ + E+R++ + +A A +PP +++P D+K I +++E LL+ + T+ L+P G R L+Y+ + +YP GI ++TV +K++R E E + A+EQE++K A GF RVI L+ +GK V+ HN LLD+MHT +F LP+ E + +FP L D K++ S+
Sbjct: 117 ANQGFDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGLGGLAYMS-----------PGAAKPP---------SAVPEDQKKFIEKVVERIEDLLQNEGNT------TVQLEPCTGFQRKLIYQTLSWKYPK-------------GIHVETVETEKKERYMIISKVDEEERKRRXXXXXAREQEELKDAVGFSRVIHALANSGKLVVGHNMLLDVMHTIHQFYCSLPEDFSEFKELATCVFPRLLDTKLMAST 331
BLAST of mRNA_H-paniculata_contig3416.9124.1 vs. uniprot
Match: A0A5G2RG64_PIG (Poly(A)-specific ribonuclease PARN n=28 Tax=Boreoeutheria TaxID=1437010 RepID=A0A5G2RG64_PIG) HSP 1 Score: 92.4 bits (228), Expect = 6.550e-16 Identity = 72/255 (28.24%), Postives = 125/255 (49.02%), Query Frame = 1
Query: 7 SKNGFDFQAWAAHGVPFLSREQEAHIQRKLLERRAREDEAAAVAAAIAEAGSSETASGEQAERPPHVTRDGTTL-ASLPLDEKTMILDARKKVEALLEEVSSADEYVERTLTLDPMNGRSRWLVYEFVGTQYPGVKLRNLTGPRNVLGIQIKTVSPDKEQRELEEMQMRDAAA--------AKEQEDIKGAAGFRRVIDVLSKAGKPVIAHNGLLDLMHTHDKFVGPLPDGHEEGTQALHTLFPSLFDNKVVMSS 744
+ GFDF +G+P+L++E+E ++ + E+R + + A A++ +V+ + + ++P D+K I +K+E LL+ + R L L+P G R L+Y+ + +YP GI ++T+ +K++R + ++ + AKEQE++K A GF RVI ++ +GK VI HN LLD+MHT +F PLP E + +FP L D K++ S+
Sbjct: 194 ASQGFDFNKVFRNGIPYLNQEEERQLREQYDEKRLQSNGAGALS---------------------YVSPNTSKCPVAIPEDQKKFIDQVVEKIEDLLQSEEN------RNLDLEPCTGFQRKLIYQTLSWKYPK-------------GIHVETLETEKKERYIVISKVDEEXXXXXXXXXXAKEQEELKDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTKLMAST 408
BLAST of mRNA_H-paniculata_contig3416.9124.1 vs. uniprot
Match: UPI001E1D65A8 (poly(A)-specific ribonuclease PARN-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D65A8) HSP 1 Score: 92.0 bits (227), Expect = 7.400e-16 Identity = 78/271 (28.78%), Postives = 133/271 (49.08%), Query Frame = 1
Query: 16 GFDFQAWAAHGVPFLSREQEAHIQRKLLERRAREDEAAAVAAAIAEAGSSETASGEQAERPPHVTRDGTTLASLPLDEKTMILDARKKVEALLEEVSSADEYVERTLTLDPMNGRSRWLVYEFVGTQYPG-VKLRNLTGPRNVLGIQIKTVSPDKEQRELEEMQMRDAAAAKEQEDIKGAAGFRRVIDVLSKAGKPVIAHNGLLDLMHTHDKFVGPLPDGHEEGTQALHTLFPSLFDNKVVMSSAVDAGLAFPQTVPGKGFDWLRE-TQAP 822
GFDF G+P+L EA ++ +++++ E A A I+ +G S+ P VT+ +P ++K + D KKVE LE S E +L+L P G R L Y+ + T+Y G + L++ TG I + V + + +++EE + A++ +I A GF VI ++S++GK ++ HN +LD+ HT ++F+ PLP +E+ +FP L D K++ ++ F + G +L TQ P
Sbjct: 118 GFDFNKLIRDGIPYLRPVDEARLKEQVIKKH----EVFASPAFISPSGGSQ---------PGGVTKGPV---DIPPEQKDFVDDICKKVEKFLE--SGEHE----SLSLPPCTGFQRKLTYQSLQTKYGGELHLQSKTGENKERFIVVTKVKGEDQMKKMEESRQ-----AQDMAEIDAAVGFTHVIKMISQSGKLIVGHNMMLDIAHTINQFMYPLPQAYEDFKSMCRCVFPRLVDTKLMSNTQ-----PFKDRIDNTGLSYLHHLTQMP 356 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3416.9124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3416.9124.1 >prot_H-paniculata_contig3416.9124.1 ID=prot_H-paniculata_contig3416.9124.1|Name=mRNA_H-paniculata_contig3416.9124.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=575bp YPSKNGFDFQAWAAHGVPFLSREQEAHIQRKLLERRAREDEAAAVAAAIAback to top mRNA from alignment at H-paniculata_contig3416:597..6265+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3416.9124.1 ID=mRNA_H-paniculata_contig3416.9124.1|Name=mRNA_H-paniculata_contig3416.9124.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5669bp|location=Sequence derived from alignment at H-paniculata_contig3416:597..6265+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3416:597..6265+ >mRNA_H-paniculata_contig3416.9124.1 ID=mRNA_H-paniculata_contig3416.9124.1|Name=mRNA_H-paniculata_contig3416.9124.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3450bp|location=Sequence derived from alignment at H-paniculata_contig3416:597..6265+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |