mRNA_H-paniculata_contig3409.9110.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3409.9110.1
Unique NamemRNA_H-paniculata_contig3409.9110.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig3409.9110.1 vs. uniprot
Match: A0A6H5L4A3_9PHAE (TYR_PHOSPHATASE_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4A3_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.240e-6
Identity = 30/40 (75.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 RRGWVRGRRQAFAQAPNGVGEDVSGWLAPTEEEGHGAGLA 120
            RR WVRGRRQAFAQAPNGVGEDVSGWL   + E  G GL+
Sbjct:  353 RRAWVRGRRQAFAQAPNGVGEDVSGWL-DDDNEVEGDGLS 391
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3409.9110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L4A3_9PHAE1.240e-675.00TYR_PHOSPHATASE_2 domain-containing protein n=1 Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3409contigH-paniculata_contig3409:13633..14326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size694
Cds size549
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930052.5970886-CDS-H-paniculata_contig3409:13632..141811622930052.5970886-CDS-H-paniculata_contig3409:13632..14181Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3409 13633..14181 +
1691481127.2672112-CDS-H-paniculata_contig3409:13632..141811691481127.2672112-CDS-H-paniculata_contig3409:13632..14181Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3409 13633..14181 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930052.6205676-UTR-H-paniculata_contig3409:14181..143261622930052.6205676-UTR-H-paniculata_contig3409:14181..14326Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3409 14182..14326 +
1691481127.276539-UTR-H-paniculata_contig3409:14181..143261691481127.276539-UTR-H-paniculata_contig3409:14181..14326Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3409 14182..14326 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3409.9110.1prot_H-paniculata_contig3409.9110.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3409 13633..14181 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3409.9110.1

>prot_H-paniculata_contig3409.9110.1 ID=prot_H-paniculata_contig3409.9110.1|Name=mRNA_H-paniculata_contig3409.9110.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=183bp
RRGWVRGRRQAFAQAPNGVGEDVSGWLAPTEEEGHGAGLAASGFKSCVEH
EDSGVDAAEITTRAGRRKSFGEPGFSQEDTDAARGGGGRATRLRRKSAPG
QSPRSAEVDGFSKDAGEDEQQEGVEQSPGLSSSGGGGTGASASPVPCKSV
ERCVTRSCTGGESHHACVREPGIAKCGGRRLQ*
back to top

mRNA from alignment at H-paniculata_contig3409:13633..14326+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3409.9110.1 ID=mRNA_H-paniculata_contig3409.9110.1|Name=mRNA_H-paniculata_contig3409.9110.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=694bp|location=Sequence derived from alignment at H-paniculata_contig3409:13633..14326+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGCGGGGGTGGGTGCGCGGGCGACGCCAGGCGTTCGCGCAAGCGCCGAA
CGGAGTGGGCGAGGACGTGTCTGGGTGGCTGGCGCCAACGGAAGAGGAGG
GTCATGGGGCGGGGTTGGCGGCGAGTGGTTTCAAGTCATGTGTCGAGCAC
GAGGATAGTGGTGTCGACGCGGCAGAGATAACTACGCGAGCGGGGCGGCG
GAAGTCGTTCGGAGAGCCTGGATTCTCGCAGGAGGACACTGATGCCGCGC
GTGGTGGCGGGGGTCGGGCGACCCGTCTACGGCGTAAGTCTGCTCCTGGG
CAGTCTCCGCGATCGGCCGAAGTGGATGGCTTCTCGAAAGATGCGGGCGA
GGACGAGCAGCAGGAGGGCGTAGAGCAGTCACCCGGTTTGTCGTCGTCGG
GGGGAGGAGGGACTGGTGCGTCGGCGTCCCCCGTGCCGTGCAAGAGTGTG
GAGCGGTGCGTGACAAGGTCATGCACAGGTGGGGAAAGTCATCATGCTTG
TGTGCGGGAGCCTGGTATCGCGAAGTGTGGAGGGCGCCGGCTTCAATGAA
GGGTGATGAGGAGGTAGGGTCAGTTGCGCGGCAGGATGCATGGCTGTGCG
CGAAAACCAAAGCGGCACGCCAAGCGGAGATGGAGCACGAAGAAGTTCGT
GAGATCACCTGTCGTGTATGTGAAAATACGCGAGCGGAGGCGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig3409:13633..14326+

>mRNA_H-paniculata_contig3409.9110.1 ID=mRNA_H-paniculata_contig3409.9110.1|Name=mRNA_H-paniculata_contig3409.9110.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1098bp|location=Sequence derived from alignment at H-paniculata_contig3409:13633..14326+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGCGGGGGTGGGTGCGCGGGCGACGCCAGGCGTTCGCGCAAGCGCCGAA
CGGAGTGGGCGAGGACGTGTCTGGGTGGCTGGCGCCAACGGAAGAGGAGG
GTCATGGGGCGGGGTTGGCGGCGAGTGGTTTCAAGTCATGTGTCGAGCAC
GAGGATAGTGGTGTCGACGCGGCAGAGATAACTACGCGAGCGGGGCGGCG
GAAGTCGTTCGGAGAGCCTGGATTCTCGCAGGAGGACACTGATGCCGCGC
GTGGTGGCGGGGGTCGGGCGACCCGTCTACGGCGTAAGTCTGCTCCTGGG
CAGTCTCCGCGATCGGCCGAAGTGGATGGCTTCTCGAAAGATGCGGGCGA
GGACGAGCAGCAGGAGGGCGTAGAGCAGTCACCCGGTTTGTCGTCGTCGG
GGGGAGGAGGGACTGGTGCGTCGGCGTCCCCCGTGCCGTGCAAGAGTGTG
GAGCGGTGCGTGACAAGGTCATGCACAGGTGGGGAAAGTCATCATGCTTG
TGTGCGGGAGCCTGGTATCGCGAAGTGTGGAGGGCGCCGGCTTCAATGAC
GGCGGGGGTGGGTGCGCGGGCGACGCCAGGCGTTCGCGCAAGCGCCGAAC
GGAGTGGGCGAGGACGTGTCTGGGTGGCTGGCGCCAACGGAAGAGGAGGG
TCATGGGGCGGGGTTGGCGGCGAGTGGTTTCAAGTCATGTGTCGAGCACG
AGGATAGTGGTGTCGACGCGGCAGAGATAACTACGCGAGCGGGGCGGCGG
AAGTCGTTCGGAGAGCCTGGATTCTCGCAGGAGGACACTGATGCCGCGCG
TGGTGGCGGGGGTCGGGCGACCCGTCTACGGCGTAAGTCTGCTCCTGGGC
AGTCTCCGCGATCGGCCGAAGTGGATGGCTTCTCGAAAGATGCGGGCGAG
GACGAGCAGCAGGAGGGCGTAGAGCAGTCACCCGGTTTGTCGTCGTCGGG
GGGAGGAGGGACTGGTGCGTCGGCGTCCCCCGTGCCGTGCAAGAGTGTGG
AGCGGTGCGTGACAAGGTCATGCACAGGTGGGGAAAGTCATCATGCTTGT
GTGCGGGAGCCTGGTATCGCGAAGTGTGGAGGGCGCCGGCTTCAATGA
back to top