mRNA_H-paniculata_contig34012.9091.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig34012.9091.1 vs. uniprot
Match: D8LJ29_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ29_ECTSI) HSP 1 Score: 246 bits (629), Expect = 1.360e-79 Identity = 114/163 (69.94%), Postives = 135/163 (82.82%), Query Frame = 1
Query: 1 YRGSTVETSLIGFVMDGMTIMNCGMECVRLRNWVTNSVITNNVIEDCGIYDFRFRFDGKIGEAIYVGTSSNQW--------TDGPDGSNYNLISGNMLRPRGNECVDVKEGASFNVIENNICADQRDPESGCYDSRGNRNIFRYNSGEQCDGAGIRLGGHVVD 465
++G VE++LIG V+DG+ I NCGMEC+R+RN+VTN+VI NN IE+CGIYDFRF+FDGKIGEAIY+GTSSNQW T+GPDGSNYNL++GN L PRGNECVD+KEGA+ NV+E N C DQRD ESGCYDSRGN N FRYN+ QC GAGIRLGGH +D
Sbjct: 4 HQGLEVESALIGTVIDGLKIQNCGMECIRMRNFVTNAVIQNNDIENCGIYDFRFQFDGKIGEAIYIGTSSNQWEDGTGDRVTNGPDGSNYNLVTGNELVPRGNECVDIKEGATMNVVEYNECEDQRDAESGCYDSRGNENTFRYNTAIQCLGAGIRLGGHTID 166
BLAST of mRNA_H-paniculata_contig34012.9091.1 vs. uniprot
Match: A0A6H5K1D2_9PHAE (Beta_helix domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1D2_9PHAE) HSP 1 Score: 248 bits (633), Expect = 1.200e-77 Identity = 114/163 (69.94%), Postives = 135/163 (82.82%), Query Frame = 1
Query: 1 YRGSTVETSLIGFVMDGMTIMNCGMECVRLRNWVTNSVITNNVIEDCGIYDFRFRFDGKIGEAIYVGTSSNQW--------TDGPDGSNYNLISGNMLRPRGNECVDVKEGASFNVIENNICADQRDPESGCYDSRGNRNIFRYNSGEQCDGAGIRLGGHVVD 465
++G VE++LIG V+DG+ I NCGMEC+R+RN+VTN+VI NN IE+CGIYDFRF+FDGKIGEAIY+GTSSNQW T+GPDGSNYNL++GN L PRGNECVD+KEGA+ NV+E N C DQRD ESGCYDSRGN N FRYN+ QC GAGIRLGGH +D
Sbjct: 153 HQGQEVESALIGTVIDGLKIQNCGMECIRMRNFVTNAVIQNNDIENCGIYDFRFQFDGKIGEAIYIGTSSNQWEDGTGDRVTNGPDGSNYNLVTGNKLVPRGNECVDIKEGATMNVVEYNECEDQRDAESGCYDSRGNENTFRYNTAVQCLGAGIRLGGHTID 315
BLAST of mRNA_H-paniculata_contig34012.9091.1 vs. uniprot
Match: D8LJ42_ECTSI (FirrV-1-B30 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ42_ECTSI) HSP 1 Score: 244 bits (622), Expect = 2.350e-74 Identity = 112/163 (68.71%), Postives = 130/163 (79.75%), Query Frame = 1
Query: 1 YRGSTVETSLIGFVMDGMTIMNCGMECVRLRNWVTNSVITNNVIEDCGIYDFRFRFDGKIGEAIYVGTSSNQWTDG--------PDGSNYNLISGNMLRPRGNECVDVKEGASFNVIENNICADQRDPESGCYDSRGNRNIFRYNSGEQCDGAGIRLGGHVVD 465
Y G TVET+LIG V+D M I NCGMEC+R+RN+VTN+VI +N IEDCGIYD+R+ FDGK+GEAIY+GTSSNQW DG PDG NYNL++GN L PRGNECVD+KEGA+ NV+E N C DQRD ESGCYDSRGN N FRYN+ E C G GIRLGGH +D
Sbjct: 199 YDGRTVETALIGTVIDSMKIQNCGMECIRMRNFVTNTVIIDNDIEDCGIYDYRYTFDGKVGEAIYIGTSSNQWADGADGRVTNGPDGCNYNLVTGNKLVPRGNECVDIKEGATMNVVEYNDCEDQRDVESGCYDSRGNENTFRYNTAENCLGGGIRLGGHEID 361
BLAST of mRNA_H-paniculata_contig34012.9091.1 vs. uniprot
Match: D7FXR9_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR9_ECTSI) HSP 1 Score: 190 bits (483), Expect = 8.280e-57 Identity = 85/153 (55.56%), Postives = 111/153 (72.55%), Query Frame = 1
Query: 7 GSTVETSLIGFVMDGMTIMNCGMECVRLRNWVTNSVITNNVIEDCGIYDFRFRFDGKIGEAIYVGTSSNQWTDGPDGSNYNLISGNMLRPRGNECVDVKEGASFNVIENNICADQRDPESGCYDSRGNRNIFRYNSGEQCDGAGIRLGGHVVD 465
G+ L GFVM+ M + NCG ECVRL++ V N+ +T N I +CG++D+ F + K GE +Y+GTSS QWT+G D N N++S N++ GNECVD+KEG+S NVIE+N C+DQ D ESGCYDSRG+ N FRYN G +C GAG+RLGG VD
Sbjct: 147 GANSSAVLDGFVMEDMVVQNCGGECVRLKDSVVNAQVTGNTISNCGVHDYMFNSEDKNGEGVYIGTSSTQWTNGEDTCNGNVVSRNLISTSGNECVDIKEGSSGNVIEDNFCSDQLDAESGCYDSRGDGNTFRYNVGSECTGAGVRLGGWEVD 299
BLAST of mRNA_H-paniculata_contig34012.9091.1 vs. uniprot
Match: D7FXR8_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR8_ECTSI) HSP 1 Score: 189 bits (480), Expect = 9.190e-55 Identity = 88/153 (57.52%), Postives = 109/153 (71.24%), Query Frame = 1
Query: 7 GSTVETSLIGFVMDGMTIMNCGMECVRLRNWVTNSVITNNVIEDCGIYDFRFRFDGKIGEAIYVGTSSNQWTDGPDGSNYNLISGNMLRPRGNECVDVKEGASFNVIENNICADQRDPESGCYDSRGNRNIFRYNSGEQCDGAGIRLGGHVVD 465
GS L GFVM+ M + NCG ECVRL++ V N+ + N I +CG++D+ F K GE +Y+GTSS QWT+G D N NL+SGN + GNECVD+KEGAS NVIE+NIC++Q D ESGCYDSRG+ N FRYN G C GAG+RLGG VD
Sbjct: 147 GSQSSAVLDGFVMEDMIVQNCGGECVRLKDSVINAQVMGNTISNCGVHDYMFNSGDKNGEGVYIGTSSTQWTNGEDTCNDNLVSGNRISTSGNECVDIKEGASGNVIEDNICSEQLDAESGCYDSRGDGNTFRYNVGTDCMGAGVRLGGWEVD 299
BLAST of mRNA_H-paniculata_contig34012.9091.1 vs. uniprot
Match: A0A6H5KT05_9PHAE (Beta_helix domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KT05_9PHAE) HSP 1 Score: 180 bits (457), Expect = 1.890e-53 Identity = 79/149 (53.02%), Postives = 108/149 (72.48%), Query Frame = 1
Query: 19 ETSLIGFVMDGMTIMNCGMECVRLRNWVTNSVITNNVIEDCGIYDFRFRFDGKIGEAIYVGTSSNQWTDGPDGSNYNLISGNMLRPRGNECVDVKEGASFNVIENNICADQRDPESGCYDSRGNRNIFRYNSGEQCDGAGIRLGGHVVD 465
+ L GFVM + + NCG ECVRL++++ +VI++NVI+DCG+ DF + GK GE IYVGTSS QW+DGPD N N I+GN + P GNECVD+KEG++ ++E N C+ Q D +SGC+ SRG+ N+FRYN+ C G G+R+GG VD
Sbjct: 124 DERLEGFVMQDVYVQNCGDECVRLKSFIVGAVISDNVIQDCGVRDFVYGNSGKNGEGIYVGTSSTQWSDGPDECNDNTITGNTITPNGNECVDIKEGSTGTIVEENTCSGQLDEDSGCFGSRGDGNVFRYNTASDCLGVGVRIGGWEVD 272
BLAST of mRNA_H-paniculata_contig34012.9091.1 vs. uniprot
Match: UPI00036AEC55 (right-handed parallel beta-helix repeat-containing protein n=1 Tax=Hahella ganghwensis TaxID=286420 RepID=UPI00036AEC55) HSP 1 Score: 177 bits (448), Expect = 1.490e-51 Identity = 86/160 (53.75%), Postives = 108/160 (67.50%), Query Frame = 1
Query: 4 RGSTVETSLIGFVMDGMTIMNCGMECVRLRNWVTNSVITNNVIEDCGIYDFRFRFDGKIGEAIYVGTSSNQWTDG------PDGSNYNLISGNMLRPRGNECVDVKEGASFNVIENNICADQRDPESGCYDSRGNRNIFRYNSGEQCDGAGIRLGGHVVD 465
+G+ + GFVM M++ N G ECVRLR +VT + I +N +CG+YDF+F GK GEAIYVGTSSNQW DG PD SN+N I N GNECVD+KEGA +N++E NIC+ Q+DP S +DSRG+ NIFRYN GAG+RLGG+ VD
Sbjct: 148 KGNEPQQGPTGFVMRAMSLKNAGGECVRLRYYVTEAEIFDNTFYNCGVYDFKFNNGGKNGEAIYVGTSSNQWDDGKNPTGGPDPSNHNWIHHNKFLTNGNECVDIKEGAEYNLVEYNICSGQQDPNSAGFDSRGDHNIFRYNVSHDNKGAGVRLGGNTVD 307
BLAST of mRNA_H-paniculata_contig34012.9091.1 vs. uniprot
Match: A0A261GHV7_9GAMM (DUF1565 domain-containing protein n=1 Tax=Hahella sp. CCB-MM4 TaxID=1926491 RepID=A0A261GHV7_9GAMM) HSP 1 Score: 168 bits (426), Expect = 3.630e-48 Identity = 85/150 (56.67%), Postives = 102/150 (68.00%), Query Frame = 1
Query: 34 GFVMDGMTIMNCGMECVRLRNWVTNSVITNNVIEDCGIYDFRFRFDGKIGEAIYVGTSSNQWTDG------PDGSNYNLISGNMLRPRGNECVDVKEGASFNVIENNICADQRDPESGCYDSRGNRNIFRYNSGEQCDGAGIRLGGHVVD 465
GFVM M I N G ECVRLR VT + I N +CG YDF+F GK GEAIY+GTSS QW DG PD SNYN + N RGNECVD+KEGA+ N++ENNICA Q+DP SG +D+RG+ NI RYN GAGIR+GG++V+
Sbjct: 164 GFVMRSMRIRNAGGECVRLRYHVTRAEIFGNTFYNCGAYDFQFDGRGKNGEAIYIGTSSEQWDDGKNPSADPDHSNYNWVHHNYFLTRGNECVDIKEGAAHNLVENNICAGQQDPASGGFDARGDYNIIRYNVSYSNKGAGIRVGGNMVN 313
BLAST of mRNA_H-paniculata_contig34012.9091.1 vs. uniprot
Match: A0A6H5LEX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEX7_9PHAE) HSP 1 Score: 168 bits (425), Expect = 2.110e-47 Identity = 77/133 (57.89%), Postives = 95/133 (71.43%), Query Frame = 1
Query: 7 GSTVETSLIGFVMDGMTIMNCGMECVRLRNWVTNSVITNNVIEDCGIYDFRFRFDGKIGEAIYVGTSSNQWTDGPDGSNYNLISGNMLRPRGNECVDVKEGASFNVIENNICADQRDPESGCYDSRGNRNIFR 405
GS L GFVM+ M + NCG ECVRL++ V N+ +T N I +CG++DF F K GE +Y+GTSS QWT+G D N NL+ GN + GNECVD+KEGAS NV+ENNIC+DQ D ESGCYDSRG+ N FR
Sbjct: 147 GSQSSAVLDGFVMEDMIVQNCGGECVRLKDSVVNAQVTGNTISNCGVHDFMFNSGDKNGEGVYIGTSSTQWTNGEDTCNDNLVFGNRISTSGNECVDIKEGASGNVVENNICSDQLDAESGCYDSRGDGNTFR 279
BLAST of mRNA_H-paniculata_contig34012.9091.1 vs. uniprot
Match: D7FZD2_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZD2_ECTSI) HSP 1 Score: 168 bits (426), Expect = 6.380e-47 Identity = 83/154 (53.90%), Postives = 107/154 (69.48%), Query Frame = 1
Query: 7 GSTVETSLIGFVMDGMTIMNCGMECVRLRNWVTNSVITNNVIEDCGIYDFRFRFDGKIGEAIYVGTSSNQWTDGP-DGSNYNLISGNMLRPRGNECVDVKEGASFNVIENNICADQRDPESGCYDSRGNRNIFRYNSGEQCDGAGIRLGGHVVD 465
GS T L GFVM+ M + NCG ECVRL++ VTN+ I +N I +CGI+D+ F G+ + +GTSS++W DG D NL++GN++ NECVDVKEGA NVIE+N+C +Q D SGCY+SRGN NIFR N+G C GAG+RLGG VD
Sbjct: 108 GSDSSTFLDGFVMEEMAVQNCGGECVRLKDGVTNAKIFSNTITNCGIHDYMFESGDMNGQGVCIGTSSDEWPDGEEDVCTNNLVAGNVIDTSANECVDVKEGAYGNVIEDNMCYNQLDINSGCYNSRGNDNIFRNNAGSDCLGAGVRLGGWEVD 261 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34012.9091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig34012.9091.1 >prot_H-paniculata_contig34012.9091.1 ID=prot_H-paniculata_contig34012.9091.1|Name=mRNA_H-paniculata_contig34012.9091.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=155bp YRGSTVETSLIGFVMDGMTIMNCGMECVRLRNWVTNSVITNNVIEDCGIYback to top mRNA from alignment at H-paniculata_contig34012:564..2467+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig34012.9091.1 ID=mRNA_H-paniculata_contig34012.9091.1|Name=mRNA_H-paniculata_contig34012.9091.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1904bp|location=Sequence derived from alignment at H-paniculata_contig34012:564..2467+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig34012:564..2467+ >mRNA_H-paniculata_contig34012.9091.1 ID=mRNA_H-paniculata_contig34012.9091.1|Name=mRNA_H-paniculata_contig34012.9091.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=930bp|location=Sequence derived from alignment at H-paniculata_contig34012:564..2467+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |