mRNA_H-paniculata_contig3401.9089.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3401.9089.1
Unique NamemRNA_H-paniculata_contig3401.9089.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig3401.9089.1 vs. uniprot
Match: UPI001E1BC44C (secreted RxLR effector protein 161-like n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BC44C)

HSP 1 Score: 94.4 bits (233), Expect = 2.340e-21
Identity = 44/99 (44.44%), Postives = 63/99 (63.64%), Query Frame = 1
Query:    1 YAVGTIAKFCENPGMAHKKAVEKILQYVLRIADLGITYGG*NSERKMLTYADSEYAACPDSRRSVSSGTVLLLEGGAICWYSRTQEVAAAGTSEAEYVA 297
            YA+  ++++CE+PG  H +AV++ L Y+    D G+ YGG      ++TY DS +AACPD+RRS +SGT+ +  GG I W S  Q+  A  T EAEY A
Sbjct:   37 YAITAVSRYCEDPGKPHWEAVKRSLSYLAGTMDYGLCYGGDQLTNTLVTYTDSNFAACPDTRRS-TSGTLFMFNGGPIAWNSHLQKSVAQSTCEAEYYA 134          
BLAST of mRNA_H-paniculata_contig3401.9089.1 vs. uniprot
Match: A0A0J7K651_LASNI (Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K651_LASNI)

HSP 1 Score: 97.4 bits (241), Expect = 3.280e-21
Identity = 45/114 (39.47%), Postives = 75/114 (65.79%), Query Frame = 1
Query:    1 YAVGTIAKFCENPGMAHKKAVEKILQYVLRIADLGITY-GG*NSERKMLTYADSEYAACPDSRRSVSSGTVLLLEGGAICWYSRTQEVAAAGTSEAEYVALAEIVNEVLFPRHV 339
            Y V  ++KF E P  AH  A +++L+Y+ R  ++GIT+ G  +   +++ ++DS+YA+CPD+R+S+SS  VL+   G + W SR Q + A  T++AEYVA+ E   EV++ R +
Sbjct: 1103 YVVSVLSKFLERPSNAHWNAAKRVLKYLKRTLNVGITFDGNCDQSNQLVAFSDSDYASCPDTRKSISS-VVLMFNNGPVIWSSRKQSIVATSTTDAEYVAMCEAAKEVVWIRRL 1215          
BLAST of mRNA_H-paniculata_contig3401.9089.1 vs. uniprot
Match: A0A6H5K2P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2P8_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 9.310e-20
Identity = 50/113 (44.25%), Postives = 72/113 (63.72%), Query Frame = 1
Query:    4 AVGTIAKFCENPGMAHKKAVEKILQYVLRIADLGITY-GG*NSERKMLTYADSEYAACPDSRRSVSSGTVLLLEGGAICWYSRTQEVAAAGTSEAEYVALAEIVNEVLFPRHV 339
            A   +A++C +P M H KA   IL YV R + +GIT+ GG  +   M  + D++YA+    RRSVS G V+ + GG + W+SRTQ+     T+EAEYVA+A+++ EVLF R V
Sbjct:  128 AARAVARYCPSPKMVHWKAALGILGYVRRTSWMGITFEGGVVTGMSMQVFVDADYASKAADRRSVSGGLVMCVWGG-VTWFSRTQKSVTLSTTEAEYVAIADVLKEVLFLRQV 239          
BLAST of mRNA_H-paniculata_contig3401.9089.1 vs. uniprot
Match: A0A6H5KD14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD14_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 2.020e-19
Identity = 50/113 (44.25%), Postives = 70/113 (61.95%), Query Frame = 1
Query:    4 AVGTIAKFCENPGMAHKKAVEKILQYVLRIADLGITYG-G*NSERKMLTYADSEYAACPDSRRSVSSGTVLLLEGGAICWYSRTQEVAAAGTSEAEYVALAEIVNEVLFPRHV 339
            AV  +A++C +P M H KA   IL YV R   +GIT+  G  +   M  + D +YA+    RRSVS G V+  EGG + W+SRT++     T+EAEYVA+A+++ EVLF R V
Sbjct:   52 AVQAVARYCASPKMVHWKAPLGILGYVCRTNWMGITFERGVVTGMSMQVFVDPDYASKAADRRSVSGGLVMR-EGGGVTWFSRTKKCVTLSTTEAEYVAIADVMKEVLFLRQV 163          
BLAST of mRNA_H-paniculata_contig3401.9089.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 2.310e-19
Identity = 50/113 (44.25%), Postives = 71/113 (62.83%), Query Frame = 1
Query:    4 AVGTIAKFCENPGMAHKKAVEKILQYVLRIADLGITYG-G*NSERKMLTYADSEYAACPDSRRSVSSGTVLLLEGGAICWYSRTQEVAAAGTSEAEYVALAEIVNEVLFPRHV 339
            AV  +A++C +P M H KA   IL YV R + +GIT+  G  +   M  + D++YA+    RRSVS G V+   GG + W+SRTQ+     T+EAEYVA+A+++ EVLF R V
Sbjct:  121 AVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMC-GGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQV 232          
BLAST of mRNA_H-paniculata_contig3401.9089.1 vs. uniprot
Match: A0A8J2WCA4_9CRUS (Hypothetical protein n=1 Tax=Daphnia galeata TaxID=27404 RepID=A0A8J2WCA4_9CRUS)

HSP 1 Score: 92.0 bits (227), Expect = 2.550e-19
Identity = 45/111 (40.54%), Postives = 70/111 (63.06%), Query Frame = 1
Query:    1 YAVGTIAKFCENPGMAHKKAVEKILQYVLRIADLGITYGG*NSERKMLTYADSEYAACPDSRRSVSSGTVLLLEGGAICWYSRTQEVAAAGTSEAEYVALAEIVNEVLFPR 333
            +AVG +++F  NPG  H +AV++IL Y+      G+ + G +   + L Y+DS+YA CPD+RRS ++GT+ +L GG I W SR Q+  A  ++EAEY A  +   E ++ R
Sbjct: 1194 FAVGQVSRFSVNPGPVHWEAVKRILSYLAGTPRHGLCFTGTDLSNQFLGYSDSDYAGCPDTRRS-TTGTLFILNGGPISWKSRIQKPVACSSTEAEYYAAGDAAREAVWLR 1303          
BLAST of mRNA_H-paniculata_contig3401.9089.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 4.080e-19
Identity = 50/113 (44.25%), Postives = 71/113 (62.83%), Query Frame = 1
Query:    4 AVGTIAKFCENPGMAHKKAVEKILQYVLRIADLGITYG-G*NSERKMLTYADSEYAACPDSRRSVSSGTVLLLEGGAICWYSRTQEVAAAGTSEAEYVALAEIVNEVLFPRHV 339
            AV  +A++C +P M H KA   IL YV R + +GIT+  G  +   M  + D++YA+    RRSVS G V+   GG + W+SRTQ+     T+EAEYVA+A+++ EVLF R V
Sbjct:  176 AVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMC-GGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQV 287          
BLAST of mRNA_H-paniculata_contig3401.9089.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 6.060e-19
Identity = 50/113 (44.25%), Postives = 71/113 (62.83%), Query Frame = 1
Query:    4 AVGTIAKFCENPGMAHKKAVEKILQYVLRIADLGITYG-G*NSERKMLTYADSEYAACPDSRRSVSSGTVLLLEGGAICWYSRTQEVAAAGTSEAEYVALAEIVNEVLFPRHV 339
            AV  +A++C +P M H KA   IL YV R + +GIT+  G  +   M  + D++YA+    RRSVS G V+   GG + W+SRTQ+     T+EAEYVA+A+++ EVLF R V
Sbjct:  238 AVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMC-GGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQV 349          
BLAST of mRNA_H-paniculata_contig3401.9089.1 vs. uniprot
Match: A0A6H5K3H6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H6_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 6.410e-19
Identity = 50/113 (44.25%), Postives = 71/113 (62.83%), Query Frame = 1
Query:    4 AVGTIAKFCENPGMAHKKAVEKILQYVLRIADLGITY-GG*NSERKMLTYADSEYAACPDSRRSVSSGTVLLLEGGAICWYSRTQEVAAAGTSEAEYVALAEIVNEVLFPRHV 339
            AV  +A++C +P M H KA   IL YV R + +GIT+  G  +   M  + D++YA+    RRSVS G V+   GG + W+SRTQ+     T+EAEYVA+A+++ EVLF R V
Sbjct:  774 AVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFENGVVTGMSMQVFVDADYASKAADRRSVSGGLVMC-GGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQV 885          
BLAST of mRNA_H-paniculata_contig3401.9089.1 vs. uniprot
Match: A0A6H5KD11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD11_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 8.660e-19
Identity = 50/113 (44.25%), Postives = 71/113 (62.83%), Query Frame = 1
Query:    4 AVGTIAKFCENPGMAHKKAVEKILQYVLRIADLGITYG-G*NSERKMLTYADSEYAACPDSRRSVSSGTVLLLEGGAICWYSRTQEVAAAGTSEAEYVALAEIVNEVLFPRHV 339
            AV  +A++C +P M H KA   IL YV R + +GIT+  G  +   M  + D++YA+    RRSVS G V+   GG + W+SRTQ+     T+EAEYVA+A+++ EVLF R V
Sbjct:  128 AVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMC-GGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQV 239          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3401.9089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001E1BC44C2.340e-2144.44secreted RxLR effector protein 161-like n=1 Tax=Da... [more]
A0A0J7K651_LASNI3.280e-2139.47Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=677... [more]
A0A6H5K2P8_9PHAE9.310e-2044.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KD14_9PHAE2.020e-1944.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP70_9PHAE2.310e-1944.25Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A8J2WCA4_9CRUS2.550e-1940.54Hypothetical protein n=1 Tax=Daphnia galeata TaxID... [more]
A0A6H5L4G9_9PHAE4.080e-1944.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JEF2_9PHAE6.060e-1944.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K3H6_9PHAE6.410e-1944.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KD11_9PHAE8.660e-1944.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3401contigH-paniculata_contig3401:4834..5181 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size348
Cds size210
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930050.1102934-CDS-H-paniculata_contig3401:4833..50431622930050.1102934-CDS-H-paniculata_contig3401:4833..5043Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3401 4834..5043 -
1691481126.1224504-CDS-H-paniculata_contig3401:4833..50431691481126.1224504-CDS-H-paniculata_contig3401:4833..5043Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3401 4834..5043 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930050.1210501-UTR-H-paniculata_contig3401:5043..51811622930050.1210501-UTR-H-paniculata_contig3401:5043..5181Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3401 5044..5181 -
1691481126.1311593-UTR-H-paniculata_contig3401:5043..51811691481126.1311593-UTR-H-paniculata_contig3401:5043..5181Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3401 5044..5181 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3401.9089.1prot_H-paniculata_contig3401.9089.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3401 4834..5043 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3401.9089.1

>prot_H-paniculata_contig3401.9089.1 ID=prot_H-paniculata_contig3401.9089.1|Name=mRNA_H-paniculata_contig3401.9089.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
MLTYADSEYAACPDSRRSVSSGTVLLLEGGAICWYSRTQEVAAAGTSEAE
YVALAEIVNEVLFPRHVQI*
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mRNA from alignment at H-paniculata_contig3401:4834..5181-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3401.9089.1 ID=mRNA_H-paniculata_contig3401.9089.1|Name=mRNA_H-paniculata_contig3401.9089.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=348bp|location=Sequence derived from alignment at H-paniculata_contig3401:4834..5181- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACGCTGTTGGCACTATCGCGAAGTTCTGCGAGAACCCCGGAATGGCGCA CAAGAAAGCTGTGGAGAAGATCCTGCAGTACGTGTTAAGGATCGCAGACC TGGGCATCACATATGGCGGCTAAAACTCTGAGAGGAAGATGCTGACGTAC GCGGACTCGGAGTACGCGGCATGCCCAGACAGCCGGCGTTCGGTGTCCAG CGGAACTGTACTGTTGTTGGAGGGGGGCGCGATCTGCTGGTACTCCAGGA CCCAGGAAGTGGCAGCGGCAGGGACGTCGGAGGCGGAATACGTCGCACTG GCGGAGATCGTGAACGAAGTTCTGTTCCCCCGTCACGTACAGATTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig3401:4834..5181-

>mRNA_H-paniculata_contig3401.9089.1 ID=mRNA_H-paniculata_contig3401.9089.1|Name=mRNA_H-paniculata_contig3401.9089.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig3401:4834..5181- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGACGTACGCGGACTCGGAGTACGCGGCATGCCCAGACAGCCGGCG
TTCGGTGTCCAGCGGAACTGTACTGTTGTTGGAGGGGGGCGCGATCTGCT
GGTACTCCAGGACCCAGGAAGTGGCAGCGGCAGGGACGTCGGAGGCGGAA
TACGTCGCACTGGCGGAGATCGTGAACGAAGTTCTGTTCCCCCGTCACGT
ACAGATTTGAATGCTGACGTACGCGGACTCGGAGTACGCGGCATGCCCAG
ACAGCCGGCGTTCGGTGTCCAGCGGAACTGTACTGTTGTTGGAGGGGGGC
GCGATCTGCTGGTACTCCAGGACCCAGGAAGTGGCAGCGGCAGGGACGTC
GGAGGCGGAATACGTCGCACTGGCGGAGATCGTGAACGAAGTTCTGTTCC
CCCGTCACGTACAGATTTGA
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