mRNA_H-paniculata_contig3400.9084.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3400.9084.1
Unique NamemRNA_H-paniculata_contig3400.9084.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig3400.9084.1 vs. uniprot
Match: D7FMF5_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF5_ECTSI)

HSP 1 Score: 210 bits (535), Expect = 5.460e-55
Identity = 193/585 (32.99%), Postives = 260/585 (44.44%), Query Frame = 1 
Query:   85 AGSNLL-EDGATTGLVDVEVRWPVAPRVTRQQSSPDDDCRSNFVIDGTVPGLKLTLLDQDCSLLWKVVSDNITAPAAE-------RSGV-VSPTPS-------------------------PESGTRRTGQ------GRLGRR--QLALFPYETKPAVATTFDIRFSLPDIAIDAATMQKTNPQNVPTATLPPPPLSP------------LRKVGSVHSSLVTWRMRRFSNFRSSNELIVENPHLTEIVG---IAGEASVVRELVGPGP----------PNLPGQPSDFRREIFEG--NFAQEDIRNEQPTPKRSQVDEVHGDSQLFSREPGVGGGSISPPQE---QQRSPPRQ------------FRWCKRAWPDGGRSNSFSVQGGGVLFSKPGWGAWRSWINGGGSDGSGSADGGIRTMP-----APQSRWQGLVDYDEEDNTDTGRP--------VVPGVEQTGCRRRDKGETGADSDVPILGEVAGGDDSGD--GQDEATRVLELGSALNVVLTGTTIILEPWNYGDKRQPEGIGGAGGDS--ERRSGNAVVMRAALSLTMTTALFLEGHWAKELHAAGS 1536
            AGS LL EDG + G V VE  WP+ PRV   +S   D   SN+V+ G  PGL L L + D S+LW+V+++NI  P  E        SG+ V P  +                         P+      G+       R GRR  QLA+FPYE    +ATTFD+ F LPD+A+ A   + T P +         P +             + +VG V S+L+TWRM RFS+FRSSNE+++  P LTE      ++      R+L+ PG           P +  Q      +I  G    A  D      T        V  D Q         G  ++PPQE      SPP              FRW KR+WPDGGR+NS +V G  VL SK GWG WR W     +  +GS D     +      A Q R Q +     E+ T TG P          P ++ T    +        S++     VA G    D     +   + EL  A +V L+ T +ILEPWNY       G+ G GGD+  E   G AVV+R  +S+ MT+A FL+GHWA +L A+G+
Sbjct: 1837 AGSKLLREDGVSLGEVTVEAWWPMVPRVGGAES---DGVTSNYVVVGRAPGLDLGLHEDDFSVLWQVLAENICGPVPEVVDSLFASSGLAVGPWSAKVDDGEHGSSTNEATDLVNTAWEGKPDKADNARGEHTSAAVSRTGRRRRQLAVFPYEHPSDIATTFDVTFHLPDVALVAHACRDTVPDSRVFGESHAAPNAADVHGGVQTEAGGVVEVGKVRSALLTWRMLRFSDFRSSNEVVMAEPLLTESTRGEELSANDGGNRKLLSPGQIVPLSLCASAPLVGAQVPGATGDIGAGAATAATSDDTGNNIT--------VRTDGQRGRATSDKVGDGVAPPQEGDSDTASPPGSGAPSPGARSGACFRWKKRSWPDGGRTNSLAVSGASVLLSKVGWGRWRVWA----AAATGSGDXXXXXLSPKDESAKQKRQQVVAG---EETTGTGTPGWTSFGEREAPPIDATASAGKVSNSATQGSNLEPAN-VAVGIARADPLAASDTGLIAELAFAFDVNLSETCLILEPWNYDSGCDRSGVCGMGGDNGWEGGDGAAVVVRVDMSMRMTSAFFLDGHWAAKLAASGT 2402
[Close]
BLAST of mRNA_H-paniculata_contig3400.9084.1 vs. uniprot
Match: A0A6H5JYL2_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYL2_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 2.510e-48
Identity = 194/583 (33.28%), Postives = 247/583 (42.37%), Query Frame = 1 
Query:   85 AGSNLL-EDGATTGLVDVEVRWPVAPRVTRQQSSPDDDCRSNFVIDGTVPGLKLTLLDQDCSLLWK---VVSDNITAPAAERS---------------------------------------GVVSPTPSPESGTRRTGQGRLGRR--QLALFPYETKPAVATTFDIRFSLPDIAIDA-ATMQKTNPQNVPTATLPPPPLSPLR-----------KVGSVHSSLVTWRMRRFSNFRSSNELIVENPHLTEIV-GIAGEASVV--RELVGPG---PPNL-----------PGQPSDFRREIFEGNFAQEDIRNEQPTPKRSQVDEVHGDSQLFSREPGVGGGSISPPQEQQR-----------SPPRQ----FRWCKRAWPDGGRSNSFSVQGGGVLFSKPGWGAWRSWINGGGSDGSGSADGGIRTMPAPQSRWQGLVDYDEEDNTDTGRPVVPGVEQTGCRRRDK-GETGADSDVPILGE------VAGGDDSGD--GQDEATRVLELGSALNVVLTGTTIILEPWNYGDKRQPEGIGGAGGDS--ERRSGNAVVMRAALSLTMTTALFLEGHWAKELHAAG 1533
            AGS LL +DG + G V V+  WPV PRV   +S   D   SN+V+ G  PGL L L + D S+LW+   V+++NI+ P  E +                                       G      +   G      GR GRR  QLA+FPYE    +ATTFDI F LPD+A+ A A         V   +      + +R           +VG V S+L+TWRM RFS+FRSSNE+ +  P LTE   G    AS V  R+L+ PG   P +L           PG   D       G  A     +E    K S    V  D Q         G  ++P QE              SP  +    FRW KR+WP GGR+NS +V G  VL SK GW  WR W                                 +E  TDTG P V    +      D     G  S+    G       VA G  S D     +A  + EL SA +V L+ T +ILEPWN    R   G+ G GGD+  E R G AVV+R  +S+ MTTA FL+GHWA +L A G
Sbjct: 1156 AGSKLLRDDGVSLGEVTVDAWWPVVPRVGGAES---DGVTSNYVVVGRAPGLDLGLHEDDFSVLWQGCEVLAENISGPVPEAADSLFASSGLAVGPWRAKADDNELGISTNEATDLVDTAGEGKSDTANNARGGHTSAAVGRTGRRRRQLAVFPYEHPSDIATTFDITFHLPDVALVAHACRDAVLDSRVFDESHAASNAADVRGGVQTEAGGVVEVGKVRSALLTWRMLRFSDFRSSNEVAMVEPLLTESTRGEELSASDVGDRKLLSPGQIVPLSLCASAPLVGVQVPGAAGDT------GAAAATAATSEDTGNKIS----VRTDGQRGRATSDKVGDGVAPLQEDDSDTVSPLGSRAPSPGARSGACFRWKKRSWPGGGRTNSLAVSGASVLLSKVGWDRWRVWAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQE-TTDTGPPGVTSFGEREAPPNDATASAGKLSNSATQGSNLEPANVAVGITSADPLAASDAGMIAELASAFDVNLSETCLILEPWNCDSGRDRSGVCGRGGDNDWEGRDGAAVVVRVDMSMRMTTAFFLDGHWAAKLAANG 1724
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3400.9084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMF5_ECTSI5.460e-5532.99FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JYL2_9PHAE2.510e-4833.28FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3400contigH-paniculata_contig3400:9565..15028 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score218.0
Seed ortholog evalue1e-53
Seed eggNOG ortholog2880.D7FMF5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1566
Cds size1566
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3400.9084.1prot_H-paniculata_contig3400.9084.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3400 9565..15028 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930049.1483762-CDS-H-paniculata_contig3400:9564..102421622930049.1483762-CDS-H-paniculata_contig3400:9564..10242Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3400 9565..10242 -
1691481125.9532354-CDS-H-paniculata_contig3400:9564..102421691481125.9532354-CDS-H-paniculata_contig3400:9564..10242Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3400 9565..10242 -
1622930049.1646597-CDS-H-paniculata_contig3400:10278..105611622930049.1646597-CDS-H-paniculata_contig3400:10278..10561Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3400 10279..10561 -
1691481125.9667253-CDS-H-paniculata_contig3400:10278..105611691481125.9667253-CDS-H-paniculata_contig3400:10278..10561Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3400 10279..10561 -
1622930049.1777246-CDS-H-paniculata_contig3400:12416..126681622930049.1777246-CDS-H-paniculata_contig3400:12416..12668Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3400 12417..12668 -
1691481125.9794703-CDS-H-paniculata_contig3400:12416..126681691481125.9794703-CDS-H-paniculata_contig3400:12416..12668Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3400 12417..12668 -
1622930049.195252-CDS-H-paniculata_contig3400:13664..137381622930049.195252-CDS-H-paniculata_contig3400:13664..13738Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3400 13665..13738 -
1691481125.9898388-CDS-H-paniculata_contig3400:13664..137381691481125.9898388-CDS-H-paniculata_contig3400:13664..13738Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3400 13665..13738 -
1622930049.2072804-CDS-H-paniculata_contig3400:14376..145171622930049.2072804-CDS-H-paniculata_contig3400:14376..14517Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3400 14377..14517 -
1691481125.9993439-CDS-H-paniculata_contig3400:14376..145171691481125.9993439-CDS-H-paniculata_contig3400:14376..14517Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3400 14377..14517 -
1622930049.2198641-CDS-H-paniculata_contig3400:14890..150281622930049.2198641-CDS-H-paniculata_contig3400:14890..15028Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3400 14891..15028 -
1691481126.0090551-CDS-H-paniculata_contig3400:14890..150281691481126.0090551-CDS-H-paniculata_contig3400:14890..15028Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3400 14891..15028 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3400.9084.1

>prot_H-paniculata_contig3400.9084.1 ID=prot_H-paniculata_contig3400.9084.1|Name=mRNA_H-paniculata_contig3400.9084.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=522bp
MDTKAGLGIDPLTGLGTDPGTSPRIDFEAGSNLLEDGATTGLVDVEVRWP
VAPRVTRQQSSPDDDCRSNFVIDGTVPGLKLTLLDQDCSLLWKVVSDNIT
APAAERSGVVSPTPSPESGTRRTGQGRLGRRQLALFPYETKPAVATTFDI
RFSLPDIAIDAATMQKTNPQNVPTATLPPPPLSPLRKVGSVHSSLVTWRM
RRFSNFRSSNELIVENPHLTEIVGIAGEASVVRELVGPGPPNLPGQPSDF
RREIFEGNFAQEDIRNEQPTPKRSQVDEVHGDSQLFSREPGVGGGSISPP
QEQQRSPPRQFRWCKRAWPDGGRSNSFSVQGGGVLFSKPGWGAWRSWING
GGSDGSGSADGGIRTMPAPQSRWQGLVDYDEEDNTDTGRPVVPGVEQTGC
RRRDKGETGADSDVPILGEVAGGDDSGDGQDEATRVLELGSALNVVLTGT
TIILEPWNYGDKRQPEGIGGAGGDSERRSGNAVVMRAALSLTMTTALFLE
GHWAKELHAAGSMPMWVAFSL*
back to top

mRNA from alignment at H-paniculata_contig3400:9565..15028-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3400.9084.1 ID=mRNA_H-paniculata_contig3400.9084.1|Name=mRNA_H-paniculata_contig3400.9084.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5464bp|location=Sequence derived from alignment at H-paniculata_contig3400:9565..15028- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATACGAAAGCGGGGCTAGGAATTGATCCGTTAACCGGCCTAGGAAC
CGATCCAGGAACCAGTCCGAGGATCGATTTCGAGGCGGGTTCGAACCTGC
TTGAGGACGGGGCGACTACGGGACTTGTCGACGTCGAGGTGAGGGTGAGA
AAAGTGCTTCTCCAGTGGGATTGCTCTGAGCTCATGGTGTTGTTTAGGAA
AATTCGAACTGCAGTGTTATTGGTCTGACCCAAACCATCAAGCATCATAT
TCGCTACCGAAGAATTGTGTAGTATGTTGTAGTCTTTTGAACATGATGTC
GGTTATCTGCGATAACGGAAGTAGATGTTCTTGAACTTCACTGTGCAGGA
TCTTTCCTTTCGGAATATCAAGCTAAAATGATATTTTGCTACCAGCACCC
CCAGCGGCACATAGTGTTGGGTATTTACGATTCCCTGTGTTCACCCCCTA
TTTCTCCTGTTGTCGTTTGTCGCTTTTGTTGTTGTATTGTTTGGGTCATT
TCACCACATAGGTGAGATGGCCGGTGGCACCTCGTGTAACGCGCCAGCAA
TCCTCCCCAGACGACGACTGTCGCAGCAATTTCGTCATCGATGGCACCGT
ACCGGGGCTGAAACTTACCCTCCTTGACCAGGATTGTTCCCTTCTTTGGA
AGGTGAGAATGGTATAATTCCTGATTTGACTGATCTAAAAGGTCTGCGGG
TGTATCCCCCAAGGAAAGGCGGTGAGGTGGAGAATCATGAAAATGCATGT
AGTAGTATGTCGACCATTGACTTCACATCCCTGCAATGCCGGGGATAGAG
TATGCCCGGACTCGTCGGTCAGATGAGGGTGGTACTATCCACTAGTCATC
ATCCTTGCGCTCCTAAGCCAACGGGTTTTACCTGGCGGAAATGCCGGGGG
GGCTGTTCGTCTATGACATGCATTTACGTAGCATGGCCTCCCAATGAGCA
CTGATATTACGAGGTACATATCCGACTGCCGAGTTCTCACCGATCATCAG
CAACTTACATAAAATAATCAACAGGGGTGCCTTTTGCTTCACGTCAGTGT
TTTTCAATGGCAAAAGTCGCTCATGTCGTGCACGGCAGGGCTTTTGGTAC
TTCTGTGCGACGTGGCGCTGAGAGGGGGCTTGGTAAAAACAAGTCACGAT
ATCGAAACAGTTTTCTGTACCAGCACTGTTTGATCGAAGAGAAAATTTGC
GATAGATGATGCGCCAACCGTGGCCAGCTCATCGATATATTCATGTGTCT
GATCATTCCTTGCACTTGGCCTGCTCTCGACGTGGAACAGGTAGTTTCGG
ACAACATAACGGCGCCGGCTGCGGAGCGCTCAGGCGTAGTTTCTCCCACC
CCTTCGCCAGAGAGGTTAGCTCCTCTGTGTTTGGCAGCTTGTTCCATGAC
ATGAAGTACTGCATCCACGATTACAAGCGTACATGGTCGTTCCATATTAT
ATACCTTGCTTTTTCCATGCCTGCCCTTGCTTCCTTATGTCTTATCCGTG
TAGTTTTCGGGTATACTACTACCACTTCCAGTAGTGGTAGTTGTAATTGT
AGTAGCAGCAGTAGTAGTAGTGGGGGTATTGGAGCTATGTCTGTGGCCCT
GCAGTCCACATTTTGCCCCCTTATGTATTTAGTCATTATTCACAACCCAT
GGCCCACGCACACTGACTAGCTGTACTCGCATTTTGACATGATAGTCACG
GAAATACTCTTCCTGACGTTATTGTACAATACTAAATGCTAAAACATCAA
ATAGATCAAGACCACGCATGGCCCACATGTAAAATCACATTGTCAAAGAA
GTGATTTCATCCCTCGCTGCCCCAGTCCGAATATTATCACAGAAACAAGC
TCCCTGAAATTGTACTCGTTGCGTAACGTACTATACACACCGGCCTCGTC
ACAACCGCATAGCGCCGCTATAACAATCTACCTACCAGTATATGCAAGAA
TTTATTCATTTTGCTGCCTGAACGCCGCAGGCCCCCTTCCCGACCGACAT
GCGCCCATTCTTCTCTAACTCCGTGCTACAGAAAACAATTCCTTAACAAC
GGTCTCATCCTCGGGCAAGCTAACACACGCTGTGCCACACTTGCGAGGCC
TGTACGCATCAAGCTCGACATTTGTTTCGCATATGTCGCATATGTTGCTT
AAAAACAGAGCCAGGATCCGCGCATTTGACCTAATTCGCATAATTTCCCC
ATATTTTTCGTCGTTTACTCGCATGCGTCTGTGCAATAATTTGATATTTG
TCCCTACTATTTATACGAGGTACGGTCAAAACGCAATTTTTCAACGTTTT
ACCCGCTCAAGTATCAACTCGCTCATTTTGTTTCGCGTGGTGCCACACGT
TATCATCTAGCGGTACCCGACGCACAGGGCAAGGACGGCTGGGTCGGAGG
CAATTGGCTCTCTTCCCGTACGAAACCAAGCCGGCGGTGGCGACCACATT
CGACATCCGATTCAGCCTGCCGGACATCGCCATAGATGCGGCAACAATGC
AGAAGACCAATCCGCAGAATGTTCCGACGGCGACGCTGCCGCCGCCACCG
CTGAGTCCGTTGCGCAAGGTCGGCAGCGTGCACAGCAGCCTGGTGACGTG
GCGAATGCGCCGGTGGGTGGATTTCTTTTTCACGAGCACAAATGCTTGGG
GTTATGCGATTGCTTTCTAAAGGAAATGCTTTCTTAAGACTCGATAGACT
ACGGCGTGATTTTCGATCAAATGAATTCTGATAGAAGAACGTACTATATT
CGTTTTGTATTTGTAAAGATGAAACGGTGGTTATTATCGTGTTCGCGATC
CGTCAAGTTGCCGACTCGGACGTGGCAATTAGTACCACAGAAGGGGGTGA
CTAAAGAAAACATCGAAATTGCTGGAAAGATCCACCAAGGTGCATATGCA
GTCCTATCCTCCGTTTTCTGGTCCCTTAACCGCTAGCACACCGTTTGGGA
ATCCTGTGGTCTTTATTCATTTATGGTCAACATTTTGAAAAGATTGAACC
CTAACTCCTCCAATAAAGATTCAACATGGTTAGTGACGCGCTATATTGGA
GTTAGGAAATATCGTGACACACTAGGTTACAAGGTCATCACAGTCTAGCA
CCAGTACCGGTATACTGCCCGTTTACTGAGCTCAAGTCAGTCTTTTGAAC
TTGATAAAATATTGGGTTCGACAATATTTGGTATTTCCTTCCTGTGCACC
TATTTCCTTCTATCCTCCTTGTCATTTTCTATGAAGTCCAATAAACACAC
TGAATCAAGTCCACTATTCCTAGTTTTTACTGATTCTAAGCTAGGTTGAT
AAATTAGATACCGAAAACAAGTGTGGATAAGAAGCCAATAGGTTGGTCTT
CACAACAACAACTACATATGCGTGGTACTGAGAGTACACGAAACGAAGCC
AAATTTTCTCCAATGGTCTTTGGTCTATTCGGTCAGCCCCTCCACACGTA
GGTATAGGACATACGGCAGCCGCTGTTCTTTGTGGTCTATGCTATCGATG
TTGTGTGGTGAAGGTTTGGTTTATGTCGCAAAATTGCCCTCTTGGTGTAT
GTCGAACTCTAGCGGGAAATTGTTTTTACCGGTTAATACATTCTCCTTTT
TTTTTGGCGACCAAAATATATACAGCCCTGCTATGATGGATTTAAGGATA
TAACAAACACAGCTAGTGTTTTTGAAAAGCCGAGTAAAAGGTGGGGGAAG
AAGACAGAAAACATTACAGGCTAGTCAAGAGGAAGGGCTAGGTCTTGTGA
CAAACGTTTTGCTGGAGCGTGAAAAAAGCCGGAATTCCCAGAATTCAAAG
TTTCCAATGGGACCGAATGAAGAAATTGTGCCATTTCAGCAGAGCCAATC
GCTGGGGAATTTTGGGTGGGACTTTGAAAATGAAAATCTAGAACTTGAAA
AGGAAATCTAGGAAGTTTGGCCCCTTTCACGTCCCATAGCAGATTCCCAG
ATTTCTAGATTTTGTTTTGTCTGCCTAGAACGTGGTCGCTAGACTGGATT
CCAACGGGATGTAGCTGTCACGGATCATGAACAATACTCCGAGGGATCTT
GTTTCCCCAAGCTTGATGTTCTCGAGAAGCCGGAGGACTGCAGCTCCTGT
CGAAAGATTTAATCTAGTGACACGTTTCGGCGAGATTGAGATGGCAACAT
GTATATTTTCTTGTTAATCCCCGAGCGCTAAGATCAACCTCGAAAGTGTC
ACCATTAAACATATGACTAACTTGAAATCAATTCTTTTCTGGAGGAGAGG
ATCGAGTACATCGATAGGTGAATGGAAGTTAAGAGTGAGTTCAACATTGC
CGAGTATATTAGAAGGCGATTAACGACCCATTTAGTTGATCACAACAAAA
AACTAACGACTGAATCCGCAATTTTTGCTTTGCGCGGGTGAAACATTATG
CCAACCAAGCTTGCGCTGGCTCTCGTGAACCCTTCCCGGTGACCCGTACC
GCCAAACGCCGTTCCAGGTTCTCGAATTTCCGATCAAGCAACGAGTTAAT
CGTCGAGAACCCTCACCTGACAGAGATAGTCGGGATCGCAGGGGAGGCAA
GTGTGGTCCGGGAACTCGTGGGACCCGGTCCGCCGAACCTTCCGGGTCAG
CCATCAGACTTCCGCAGAGAAATATTTGAGGGTAATTTCGCGCAGGAAGA
TATACGCAATGAACAACCTACTCCGAAACGGTCACAAGTCGACGAAGTAC
ACGGCGATTCTCAGCTCTTTTCTCGAGAACCAGGCGTTGGCGGAGGTTCT
GTTCTCCAGTTTCATCTGCCCGGGCATGGAACGGAGATATCCCCTCCCCA
GGAACAACAACGATCACCACCTCGGCAGTTTCGATGGTGCAAGCGCGCCT
GGCCAGATGGCGGGCGATCGAATTCCTTCTCGGTTCAGGGAGGAGGTGTG
CTCTTCTCTAAACCCGGTTGGGGTGCGTGGCGAAGTTGGATTAATGGTGG
TGGTAGTGACGGTAGTGGCAGCGCTGATGGGGGGATACGTACAATGCCAG
CGCCGCAATCCCGATGGCAAGGCTTGGTAGACTACGATGAGGAGGACAAT
ACGGACACGGGACGGCCGGTAGTGCCGGGAGTAGAGCAGACGGGGTGTCG
GCGACGTGATAAAGGGGAGACCGGAGCGGATTCTGACGTGCCGATTCTAG
GCGAGGTCGCGGGTGGTGATGATAGTGGCGACGGCCAAGACGAAGCAACC
CGCGTATTGGAGCTTGGGTCCGCGTTGAATGTTGTGCTGACCGGTACTAC
TATCATCTTGGAGCCATGGAATTATGGCGATAAGCGCCAACCCGAAGGCA
TCGGTGGCGCTGGTGGTGATAGCGAGCGGCGAAGTGGGAACGCCGTGGTG
ATGCGCGCCGCGCTGTCGTTGACCATGACCACTGCGTTATTTCTCGAAGG
GCATTGGGCGAAGGAGCTTCATGCGGCGGGGTCGATGCCGATGTGGGTTG
CGTTTTCCCTCTAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig3400:9565..15028-

>mRNA_H-paniculata_contig3400.9084.1 ID=mRNA_H-paniculata_contig3400.9084.1|Name=mRNA_H-paniculata_contig3400.9084.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3132bp|location=Sequence derived from alignment at H-paniculata_contig3400:9565..15028- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATACGAAAGCGGGGCTAGGAATTGATCCGTTAACCGGCCTAGGAAC
CGATCCAGGAACCAGTCCGAGGATCGATTTCGAGGCGGGTTCGAACCTGC
TTGAGGACGGGGCGACTACGGGACTTGTCGACGTCGAGATGGATACGAAA
GCGGGGCTAGGAATTGATCCGTTAACCGGCCTAGGAACCGATCCAGGAAC
CAGTCCGAGGATCGATTTCGAGGCGGGTTCGAACCTGCTTGAGGACGGGG
CGACTACGGGACTTGTCGACGTCGAGGTGAGATGGCCGGTGGCACCTCGT
GTAACGCGCCAGCAATCCTCCCCAGACGACGACTGTCGCAGCAATTTCGT
CATCGATGGCACCGTACCGGGGCTGAAACTTACCCTCCTTGACCAGGATT
GTTCCCTTCTTTGGAAGGTGAGATGGCCGGTGGCACCTCGTGTAACGCGC
CAGCAATCCTCCCCAGACGACGACTGTCGCAGCAATTTCGTCATCGATGG
CACCGTACCGGGGCTGAAACTTACCCTCCTTGACCAGGATTGTTCCCTTC
TTTGGAAGGTAGTTTCGGACAACATAACGGCGCCGGCTGCGGAGCGCTCA
GGCGTAGTTTCTCCCACCCCTTCGCCAGAGAGGTAGTTTCGGACAACATA
ACGGCGCCGGCTGCGGAGCGCTCAGGCGTAGTTTCTCCCACCCCTTCGCC
AGAGAGCGGTACCCGACGCACAGGGCAAGGACGGCTGGGTCGGAGGCAAT
TGGCTCTCTTCCCGTACGAAACCAAGCCGGCGGTGGCGACCACATTCGAC
ATCCGATTCAGCCTGCCGGACATCGCCATAGATGCGGCAACAATGCAGAA
GACCAATCCGCAGAATGTTCCGACGGCGACGCTGCCGCCGCCACCGCTGA
GTCCGTTGCGCAAGGTCGGCAGCGTGCACAGCAGCCTGGTGACGTGGCGA
ATGCGCCGCGGTACCCGACGCACAGGGCAAGGACGGCTGGGTCGGAGGCA
ATTGGCTCTCTTCCCGTACGAAACCAAGCCGGCGGTGGCGACCACATTCG
ACATCCGATTCAGCCTGCCGGACATCGCCATAGATGCGGCAACAATGCAG
AAGACCAATCCGCAGAATGTTCCGACGGCGACGCTGCCGCCGCCACCGCT
GAGTCCGTTGCGCAAGGTCGGCAGCGTGCACAGCAGCCTGGTGACGTGGC
GAATGCGCCGGTTCTCGAATTTCCGATCAAGCAACGAGTTAATCGTCGAG
AACCCTCACCTGACAGAGATAGTCGGGATCGCAGGGGAGGCAAGTGTGGT
CCGGGAACTCGTGGGACCCGGTCCGCCGAACCTTCCGGGTCAGCCATCAG
ACTTCCGCAGAGAAATATTTGAGGGTAATTTCGCGCAGGAAGATATACGC
AATGAACAACCTACTCCGAAACGGTCACAAGTCGACGAAGTACACGGCGA
TTCTCAGCTCTTTTCTCGAGAACCAGGCGTTGGCGGAGGTTCTGTTCTCG
AATTTCCGATCAAGCAACGAGTTAATCGTCGAGAACCCTCACCTGACAGA
GATAGTCGGGATCGCAGGGGAGGCAAGTGTGGTCCGGGAACTCGTGGGAC
CCGGTCCGCCGAACCTTCCGGGTCAGCCATCAGACTTCCGCAGAGAAATA
TTTGAGGGTAATTTCGCGCAGGAAGATATACGCAATGAACAACCTACTCC
GAAACGGTCACAAGTCGACGAAGTACACGGCGATTCTCAGCTCTTTTCTC
GAGAACCAGGCGTTGGCGGAGGTTCTATATCCCCTCCCCAGGAACAACAA
CGATCACCACCTCGGCAGTTTCGATGGTGCAAGCGCGCCTGGCCAGATGG
CGGGCGATCGAATTCCTTCTCGGTTCAGGGAGGAGGTGTGCTCTTCTCTA
AACCCGGTTGGGGTGCGTGGCGAAGTTGGATTAATGGTGGTGGTAGTGAC
GGTAGTGGCAGCGCTGATGGGGGGATACGTACAATGCCAGCGCCGCAATC
CCGATGGCAAGGCTTGGTAGACTACGATGAGGAGGACAATACGGACACGG
GACGGCCGGTAGTGCCGGGAGTAGAGCAGACGGGGTGTCGGCGACGTGAT
AAAGGGGAGACCGGAGCGGATTCTGACGTGCCGATTCTAGGCGAGGTCGC
GGGTGGTGATGATAGTGGCGACGGCCAAGACGAAGCAACCCGCGTATTGG
AGCTTGGGTCCGCGTTGAATGTTGTGCTGACCGGTACTACTATCATCTTG
GAGCCATGGAATTATGGCGATAAGCGCCAACCCGAAGGCATCGGTGGCGC
TGGTGGTGATAGCGAGCGGCGAAGTGGGAACGCCGTGGTGATGCGCGCCG
CGCTGTCGTTGACCATGACCACTGCGTTATTTCTCGAAGGGCATTGGGCG
AAGGAGCTTCATGCGGCGGGGTCGATGCCGATGTGGGTTGCGTTTTCCCT
CTAGATATCCCCTCCCCAGGAACAACAACGATCACCACCTCGGCAGTTTC
GATGGTGCAAGCGCGCCTGGCCAGATGGCGGGCGATCGAATTCCTTCTCG
GTTCAGGGAGGAGGTGTGCTCTTCTCTAAACCCGGTTGGGGTGCGTGGCG
AAGTTGGATTAATGGTGGTGGTAGTGACGGTAGTGGCAGCGCTGATGGGG
GGATACGTACAATGCCAGCGCCGCAATCCCGATGGCAAGGCTTGGTAGAC
TACGATGAGGAGGACAATACGGACACGGGACGGCCGGTAGTGCCGGGAGT
AGAGCAGACGGGGTGTCGGCGACGTGATAAAGGGGAGACCGGAGCGGATT
CTGACGTGCCGATTCTAGGCGAGGTCGCGGGTGGTGATGATAGTGGCGAC
GGCCAAGACGAAGCAACCCGCGTATTGGAGCTTGGGTCCGCGTTGAATGT
TGTGCTGACCGGTACTACTATCATCTTGGAGCCATGGAATTATGGCGATA
AGCGCCAACCCGAAGGCATCGGTGGCGCTGGTGGTGATAGCGAGCGGCGA
AGTGGGAACGCCGTGGTGATGCGCGCCGCGCTGTCGTTGACCATGACCAC
TGCGTTATTTCTCGAAGGGCATTGGGCGAAGGAGCTTCATGCGGCGGGGT
CGATGCCGATGTGGGTTGCGTTTTCCCTCTAG
back to top