mRNA_H-paniculata_contig340.9081.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig340.9081.1 vs. uniprot
Match: D7FWU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWU0_ECTSI) HSP 1 Score: 101 bits (252), Expect = 2.880e-19 Identity = 45/93 (48.39%), Postives = 62/93 (66.67%), Query Frame = 2
Query: 1733 MHNPLACDEDIVDTLSGFVGDQEYLFFAVVCRGWKEAWGQRPKVTGAVTPDRSAMQLRYSFECGLQPSTALSRSAARVGKLPLLRCALANDCP 2011
M NPL ++ +V+ L +V +YLFFA VCRGW AWG+RP VT A T S QL +SF CGL+ + + +AA++G+L LL+CA+ N CP
Sbjct: 5 MLNPLTSNKTVVNHLMEYVDHNQYLFFATVCRGWSRAWGERPAVTRAATNGTSVSQLSFSFHCGLRRTKGICETAAKLGRLDLLQCAVLNGCP 97
BLAST of mRNA_H-paniculata_contig340.9081.1 vs. uniprot
Match: D7G8V2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8V2_ECTSI) HSP 1 Score: 95.1 bits (235), Expect = 1.900e-16 Identity = 45/99 (45.45%), Postives = 58/99 (58.59%), Query Frame = 2
Query: 1733 MHNPLACDEDIVDTLSGFVGDQEYLFFAVVCRGWKEAWGQRPKVTGAVTPDRSAMQLRYSFECGLQPSTALSRSAARVGKLPLLRCALANDCPWTEDMC 2029
M L D+ L FV +++LFFA VCR WKEAWGQRP T AVT D + QL +F+CGL + S A++G+L LL+CA + C W E C
Sbjct: 1 MDAALFAQSDVASCLVEFVDYEQFLFFAGVCRAWKEAWGQRPPTTRAVTEDTTVAQLSQNFQCGLSLIADVCTSVAKLGRLDLLQCARRHGCAWNEVTC 99
BLAST of mRNA_H-paniculata_contig340.9081.1 vs. uniprot
Match: A0A6H5JHR4_9PHAE (DNA_pol_lambd_f domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR4_9PHAE) HSP 1 Score: 70.5 bits (171), Expect = 2.760e-8 Identity = 41/100 (41.00%), Postives = 60/100 (60.00%), Query Frame = 2
Query: 491 SSSFLRGRLFNKAISREHLLVEVLS--------------GTAPPRVRLTVVGANPVMVIRGSQQRQASKALSH-GESAVLEPGDAFRFCRGFEYSIRIST 745
SS+FLR L + ISREH+ V+ ++ AP RVR++VVG+NPV+++R ++ K+ H G+SAV GD FRFCRGF+ +R+ T
Sbjct: 37 SSTFLRKYLTDATISREHVRVQAIAYNDDSGDGGSEHDAAAAPSRVRVSVVGSNPVLLVR--RKPPGGKSYIHRGQSAVAGVGDGFRFCRGFDKVVRVVT 134 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig340.9081.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig340.9081.1 >prot_H-paniculata_contig340.9081.1 ID=prot_H-paniculata_contig340.9081.1|Name=mRNA_H-paniculata_contig340.9081.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1322bp MWSYRSQVVAAWGRQCSAKKVTATMGNGEATITLNVDGEEPAKLGADNGAback to top mRNA from alignment at H-paniculata_contig340:22064..40090+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig340.9081.1 ID=mRNA_H-paniculata_contig340.9081.1|Name=mRNA_H-paniculata_contig340.9081.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=18027bp|location=Sequence derived from alignment at H-paniculata_contig340:22064..40090+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig340:22064..40090+ >mRNA_H-paniculata_contig340.9081.1 ID=mRNA_H-paniculata_contig340.9081.1|Name=mRNA_H-paniculata_contig340.9081.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=7932bp|location=Sequence derived from alignment at H-paniculata_contig340:22064..40090+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |