mRNA_H-paniculata_contig3373.9015.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3373.9015.1
Unique NamemRNA_H-paniculata_contig3373.9015.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig3373.9015.1 vs. uniprot
Match: A0A6H5K364_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K364_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 2.670e-28
Identity = 71/110 (64.55%), Postives = 82/110 (74.55%), Query Frame = 1
Query: 1408 DGLSARENALMRDNTRRIT------PTLIKRPPGGPFGASKARAWHAQQVVQSAVTPMQAMRAVLDRPLRSNYVTVSTAINRVAKLSAERSPPG-LRGEQERQHLGVLLK 1716
            + L    N   R   RR        P L +RPPGGPFGASKA AWHAQQVVQSAVTP+QAMRAVLDRPLRSNYV+VSTA+NRVAKL+A R   G L+GE+E ++LG+LLK
Sbjct:  203 ESLREEANQGRRGGARRAVRGRVSPPPLKRRPPGGPFGASKAVAWHAQQVVQSAVTPLQAMRAVLDRPLRSNYVSVSTALNRVAKLAASRRRGGGLKGEEEPKYLGILLK 312          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3373.9015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K364_9PHAE2.670e-2864.55Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3373contigH-paniculata_contig3373:12766..16849 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons4
Model size1716
Cds size1641
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3373.9015.1prot_H-paniculata_contig3373.9015.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3373 12841..16849 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930040.2834296-UTR-H-paniculata_contig3373:12765..128401622930040.2834296-UTR-H-paniculata_contig3373:12765..12840Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3373 12766..12840 +
1691481121.9695187-UTR-H-paniculata_contig3373:12765..128401691481121.9695187-UTR-H-paniculata_contig3373:12765..12840Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3373 12766..12840 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930040.302379-CDS-H-paniculata_contig3373:12840..130091622930040.302379-CDS-H-paniculata_contig3373:12840..13009Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3373 12841..13009 +
1691481121.9805017-CDS-H-paniculata_contig3373:12840..130091691481121.9805017-CDS-H-paniculata_contig3373:12840..13009Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3373 12841..13009 +
1622930040.3186717-CDS-H-paniculata_contig3373:14430..147081622930040.3186717-CDS-H-paniculata_contig3373:14430..14708Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3373 14431..14708 +
1691481121.990621-CDS-H-paniculata_contig3373:14430..147081691481121.990621-CDS-H-paniculata_contig3373:14430..14708Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3373 14431..14708 +
1622930040.3350306-CDS-H-paniculata_contig3373:14998..160421622930040.3350306-CDS-H-paniculata_contig3373:14998..16042Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3373 14999..16042 +
1691481122.0006757-CDS-H-paniculata_contig3373:14998..160421691481122.0006757-CDS-H-paniculata_contig3373:14998..16042Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3373 14999..16042 +
1622930040.3523457-CDS-H-paniculata_contig3373:16699..168491622930040.3523457-CDS-H-paniculata_contig3373:16699..16849Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3373 16700..16849 +
1691481122.011147-CDS-H-paniculata_contig3373:16699..168491691481122.011147-CDS-H-paniculata_contig3373:16699..16849Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3373 16700..16849 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3373.9015.1

>prot_H-paniculata_contig3373.9015.1 ID=prot_H-paniculata_contig3373.9015.1|Name=mRNA_H-paniculata_contig3373.9015.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=547bp
MVCHQQPPSQNCCELITMGRIRIMYVVVVMVCLLVSLGLPSGHAALAGGA
SIPWRTGAEVLRLSRPSTATPSGFACHRTCSISRGGSRERSANKPRTCPI
GGGGGDGSSCFRFREHRGGGRACTFVRGEGGSGVGSQGSDRRQSERVPTP
TFQQETPRSRFRVPGDGNIPLEAAGKLQEAPSTNADYTVIAANPASTAIR
TPNEIATTSRAKVGVTARGKTSRDPAYKDNGTSDGFIEDVSSLARSTNPL
QSESDMLDNDTSQWNSLLQKRLLQKLSKPGRKARGASPSHSSTPAAAATA
AAARERKLPSPGLTADEIVPATTSDAVVGEANEKVSSSNGNICFTSPAIN
IAASASAATADHTEEIHQRYSDICATEKAGKKKRKRRSETDTVSVQRKSP
RNDVASSREDETALSRDSLRGSNTDPERTALERGKKHGDACSGSDGLSAR
ENALMRDNTRRITPTLIKRPPGGPFGASKARAWHAQQVVQSAVTPMQAMR
AVLDRPLRSNYVTVSTAINRVAKLSAERSPPGLRGEQERQHLGVLLK
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mRNA from alignment at H-paniculata_contig3373:12766..16849+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3373.9015.1 ID=mRNA_H-paniculata_contig3373.9015.1|Name=mRNA_H-paniculata_contig3373.9015.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4084bp|location=Sequence derived from alignment at H-paniculata_contig3373:12766..16849+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCACGAATCCGGCACGGTGCGGCCGGGCACGGACTAATGCTCGACTTTGC GAAGAATTAGGTTCAGAAGGATGTGATGGTGTGTCACCAGCAACCACCGT CGCAGAATTGCTGTGAATTAATCACAATGGGTCGTATAAGGATCATGTAC GTTGTTGTTGTGATGGTTTGCCTGTTGGTGTCCTTGGGCTTGCCTTCGGG GCATGCTGCTTTGGCGGGTGGAGCTAGCATCCCATGGCGAACAGGTGTGT TGACGGTGTTATGCTCATGTTGCAGGAATTACCAAGGTTGTGATGTATTG ATCTTAGAGGTTCACCAGCGAGTTCAGTAAACGCGATGATCGCACAGCAC AGCACAGCAGACATGTATGACATCGGTGTCATGTTTCCGCCGCATCACTT CGTTCAAACAGTTGATTGGGTCCCTCCTGCTAGTCATGTTTTCAAGTTAC AAACTGTACTGTAGTCATTTACCCTGTAGATATGGAGGGGTGCCACTCTT TTCAGACGTGATTATCTCGAGACCTACGGCGCTACTGACAACGAATATTG TGCCATTGGGAAACTATGGCTGAGATCTGTCGATTGATGGATTTTCTCGA CCGCGTAGGGTGTCCGTTCTCGAGACGGTCGCCTTTGAAAAACATGCACC CCCATACAGGTTTCACGGGTAATGGCATAGCCTGGCGAATATATAAGTAC ATGACAGGAGAAACAAACAGCAAAAGCGTTGACCATTGCGCAGCCCTTCG TCCTCTGTCACGCCTTTTTTTCCAGTAGCTTGCGCCGCTGCAGCTGTATT TAGCAAAGGTATGTATGCTGAGGTCCCCATTTCAGTAGATATGGAACCTC AGACTAGCCTACACTACTGCGGAGCACGGACGAAACATGAGCAGGCAAAA CTACTAGTTCCTCCGCATATCGAAAACTGTAAATAGCGCAAAAACAAGGT TTTGCCGCGAGCTCTTCAACATATTGAACACCTTCTTCGCTCAACTATCC ACTCCGAGTAATCTATATTTCCCGCAGATAAAAATGCTAGAACTCTCGAG CTCTATTTATCTGCAACAGGTAGGTACAAATCAAGTGTCGCTAGCAGCGG CCGTGCCCTGCCCACCAGATACCGTCAGTACAAATTTTGTCGCATTTCTC TGGCAACGATCATTCCCGCGTCGGGCATATGAGATCGTAGCTCATAAGGA TAACTTGCACAGATATGTCGTCACGATGCGTACCATCTCTTTCCATTCGT ACGTTGTACAGCCAGGCTTACGCACCGCACCGTATACTTGCTTTGTCCTC GTGCACATTTAGTCATCATGCAGAACCAGGACCCGCGCACAACAGCTCGC GGCGCTTGCGTTGTGACTCACTACGCTCTCATGTAGGCTCAATGTCCGTA AAAAATTGTTTAAAAAACTACTCGAGTATAGAGTTCCGAAACCACCACTA CCACCATCATCGTCATCATCATCATTGTCAGCACCATCGCCTGAACGTTA TAAATAACAAGGATACATCTTGTCCGAAGTTGAACCGTAGGAAGCCCGTC TGCACGAATATTGATCTCTTCGGCGTGTTAGATGTCCACCACTCTGTCAC CGCTGACAGCCCAACAATCGCCCTAAAGTTACACTCCCTGCACTCCTTCC TCCCGCTGTGCACAGGGGCCGAGGTGCTCCGATTATCAAGACCATCTACG GCCACGCCATCGGGCTTCGCCTGCCACCGAACCTGTTCGATCTCTCGCGG GGGATCAAGAGAGAGGTCTGCTAATAAGCCAAGAACCTGTCCCATTGGTG GCGGCGGTGGTGATGGGAGCAGTTGTTTTCGTTTTAGGGAGCACAGAGGC GGTGGCAGAGCTTGCACTTTCGTGCGTGGAGAGGGTGGTAGTGGCGTGGG AAGCCAGGGATCTGACAGGCGACAGAGCGAACGGGTGCCAACGGTGGGTG ACGAGGTTGGATAGTGACTGTATACAGTAAAGCTCAATCGTTGATGCAGA AGTTCTCCGCTTACGCAAACCGATTTCGTCGAAGAAACAGAATCGGGAAA GTGTAGTTTCTCTCGCATAGCACAGTACGGCATAGCATATCATAGCTCTC TCCCCTCGTTCATTCGGTCCATGTTGTCGAAAAAAGAAAATCAAATACTA ACCGAAGAAAAGCCGACGGCGACGACAACAACAACATCCAACAAACAACA ACAACGCTTCCCCGGCCTCGATCCCCTCCTAAGCCAACCTTTCAACAGGA AACACCACGGTCTCGATTTCGCGTCCCCGGCGACGGGAACATCCCGTTAG AGGCTGCGGGAAAATTGCAGGAAGCACCCTCAACAAACGCGGACTACACA GTTATTGCAGCTAACCCAGCAAGCACGGCTATTAGGACACCGAATGAGAT AGCAACTACATCGCGTGCAAAAGTAGGAGTGACCGCGCGAGGAAAGACCT CGCGAGACCCCGCATACAAGGACAATGGCACTAGTGATGGTTTCATTGAG GATGTTTCAAGTCTCGCGCGAAGTACGAATCCTCTGCAGTCTGAGAGTGA TATGCTGGATAATGACACCAGTCAGTGGAATTCCCTCCTGCAAAAACGCC TGCTGCAGAAGCTCAGCAAACCCGGGAGGAAGGCAAGAGGTGCATCTCCA TCACACTCATCGACACCAGCAGCAGCGGCCACAGCGGCGGCGGCGCGGGA AAGGAAATTGCCATCACCAGGGCTGACAGCCGACGAAATTGTGCCAGCAA CGACGAGCGATGCTGTCGTCGGAGAAGCTAACGAAAAAGTTTCATCATCA AACGGTAACATATGCTTTACTTCGCCGGCAATCAACATTGCCGCCTCCGC CTCCGCCGCCACTGCAGATCATACAGAAGAAATTCATCAACGATATTCAG ATATCTGTGCCACGGAAAAGGCCGGGAAAAAAAAACGCAAGCGACGCAGC GAGACAGACACCGTTTCGGTCCAACGAAAGTCTCCCCGCAACGATGTAGC GTCGTCGCGGGAGGACGAAACGGCGTTGAGCAGAGACAGTCTGCGGGGCA GCAACACTGACCCCGAGAGGACGGCACTGGAACGCGGGAAGAAACATGGT GATGCTTGTTCGGGGAGTGATGGGTTGTCTGCACGGGAGAATGCGTTGAT GCGTGATAATACGCGACGAATTACCCCGACGTTGATTAAGCGACCCCCCG GCGGCCCGTTTGGCGCCAGCAAAGCGCGAGCGTGGCATGCGCAGCAGGTG GTGCAGTCTGCGGTAACGCCAATGCAGGTGAGTGAAGAAGCAGAGAGGTA TTGGAATAGTTTCGTCTATATTTTCTAGAGCTGGAAAGACAGCATCACCC GCTTTTGTTTGGTTTGTTCCTTGCCTTGCTCGTGTTGCGCAGGTGGTTTT TGTCTCTTTTTTTGTTTGATTTTGCGTGTGCAGTAGAGTAACCAGGATTA TTGGGGGTCTTGACTGATCCGCGTACTACGGTCGCGTAGCCTACTAGTGG CGGTGGGCTGATTGAAGGGATACCTCGGTAATAAGAGTCATTGTCAGATT TTGATGTTAAGAGTGCAATCAACTTATCAATATGTGTACACCGCTTTGAG GTTTCAACTGCACCCAATTTACTTCAGAGGATTTTGTCTTCTGAGCTGGT TAAGATATTAACGTTTTGTTATTGGGCAAAAAACCTGATTTTTCCCCTAG TTACGGGTTCCGCGACGATAGCTTTGTTCCCGCACCCCACCCCCCCTTCC CTCTCACTTTGTGGGGGGCTGTTTGTGTGCGATCAGCCAGGTGCTTGCAA TGTTACCGTAGCTCGACAGGGTTGTGCCTATCACCCCTTTCAACAAAGCA CAAAAAGAATCCTAGCTTCGCTACCTTGGACAGAAACGTTTTTTGAGAGT GATCATTTTTATTCTTTTTGTTCATGCAATCCAGGCCATGCGTGCGGTGT TGGACCGGCCTCTGCGGAGCAACTACGTCACCGTGTCCACGGCCATCAAC AGGGTAGCTAAGCTGTCGGCGGAGAGATCGCCCCCAGGGCTTCGAGGGGA ACAAGAGCGGCAACATCTAGGTGTTTTGCTCAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig3373:12766..16849+

>mRNA_H-paniculata_contig3373.9015.1 ID=mRNA_H-paniculata_contig3373.9015.1|Name=mRNA_H-paniculata_contig3373.9015.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3282bp|location=Sequence derived from alignment at H-paniculata_contig3373:12766..16849+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGTGTCACCAGCAACCACCGTCGCAGAATTGCTGTGAATTAATCAC
AATGGGTCGTATAAGGATCATGTACGTTGTTGTTGTGATGGTTTGCCTGT
TGGTGTCCTTGGGCTTGCCTTCGGGGCATGCTGCTTTGGCGGGTGGAGCT
AGCATCCCATGGCGAACAGATGGTGTGTCACCAGCAACCACCGTCGCAGA
ATTGCTGTGAATTAATCACAATGGGTCGTATAAGGATCATGTACGTTGTT
GTTGTGATGGTTTGCCTGTTGGTGTCCTTGGGCTTGCCTTCGGGGCATGC
TGCTTTGGCGGGTGGAGCTAGCATCCCATGGCGAACAGGGGCCGAGGTGC
TCCGATTATCAAGACCATCTACGGCCACGCCATCGGGCTTCGCCTGCCAC
CGAACCTGTTCGATCTCTCGCGGGGGATCAAGAGAGAGGTCTGCTAATAA
GCCAAGAACCTGTCCCATTGGTGGCGGCGGTGGTGATGGGAGCAGTTGTT
TTCGTTTTAGGGAGCACAGAGGCGGTGGCAGAGCTTGCACTTTCGTGCGT
GGAGAGGGTGGTAGTGGCGTGGGAAGCCAGGGATCTGACAGGCGACAGAG
CGAACGGGTGCCAACGGGGCCGAGGTGCTCCGATTATCAAGACCATCTAC
GGCCACGCCATCGGGCTTCGCCTGCCACCGAACCTGTTCGATCTCTCGCG
GGGGATCAAGAGAGAGGTCTGCTAATAAGCCAAGAACCTGTCCCATTGGT
GGCGGCGGTGGTGATGGGAGCAGTTGTTTTCGTTTTAGGGAGCACAGAGG
CGGTGGCAGAGCTTGCACTTTCGTGCGTGGAGAGGGTGGTAGTGGCGTGG
GAAGCCAGGGATCTGACAGGCGACAGAGCGAACGGGTGCCAACGCCAACC
TTTCAACAGGAAACACCACGGTCTCGATTTCGCGTCCCCGGCGACGGGAA
CATCCCGTTAGAGGCTGCGGGAAAATTGCAGGAAGCACCCTCAACAAACG
CGGACTACACAGTTATTGCAGCTAACCCAGCAAGCACGGCTATTAGGACA
CCGAATGAGATAGCAACTACATCGCGTGCAAAAGTAGGAGTGACCGCGCG
AGGAAAGACCTCGCGAGACCCCGCATACAAGGACAATGGCACTAGTGATG
GTTTCATTGAGGATGTTTCAAGTCTCGCGCGAAGTACGAATCCTCTGCAG
TCTGAGAGTGATATGCTGGATAATGACACCAGTCAGTGGAATTCCCTCCT
GCAAAAACGCCTGCTGCAGAAGCTCAGCAAACCCGGGAGGAAGGCAAGAG
GTGCATCTCCATCACACTCATCGACACCAGCAGCAGCGGCCACAGCGGCG
GCGGCGCGGGAAAGGAAATTGCCATCACCAGGGCTGACAGCCGACGAAAT
TGTGCCAGCAACGACGAGCGATGCTGTCGTCGGAGAAGCTAACGAAAAAG
TTTCATCATCAAACGGTAACATATGCTTTACTTCGCCGGCAATCAACATT
GCCGCCTCCGCCTCCGCCGCCACTGCAGATCATACAGAAGAAATTCATCA
ACGATATTCAGATATCTGTGCCACGGAAAAGGCCGGGAAAAAAAAACGCA
AGCGACGCAGCGAGACAGACACCGTTTCGGTCCAACGAAAGTCTCCCCGC
AACGATGTAGCGTCGTCGCGGGAGGACGAAACGGCGTTGAGCAGAGACAG
TCTGCGGGGCAGCAACACTGACCCCGAGAGGACGGCACTGGAACGCGGGA
AGAAACATGGTGATGCTTGTTCGGGGAGTGATGGGTTGTCTGCACGGGAG
AATGCGTTGATGCGTGATAATACGCGACGAATTACCCCGACGTTGATTAA
GCGACCCCCCGGCGGCCCGTTTGGCGCCAGCAAAGCGCGAGCGTGGCATG
CGCAGCAGGTGGTGCAGTCTGCGGTAACGCCAATGCAGCCAACCTTTCAA
CAGGAAACACCACGGTCTCGATTTCGCGTCCCCGGCGACGGGAACATCCC
GTTAGAGGCTGCGGGAAAATTGCAGGAAGCACCCTCAACAAACGCGGACT
ACACAGTTATTGCAGCTAACCCAGCAAGCACGGCTATTAGGACACCGAAT
GAGATAGCAACTACATCGCGTGCAAAAGTAGGAGTGACCGCGCGAGGAAA
GACCTCGCGAGACCCCGCATACAAGGACAATGGCACTAGTGATGGTTTCA
TTGAGGATGTTTCAAGTCTCGCGCGAAGTACGAATCCTCTGCAGTCTGAG
AGTGATATGCTGGATAATGACACCAGTCAGTGGAATTCCCTCCTGCAAAA
ACGCCTGCTGCAGAAGCTCAGCAAACCCGGGAGGAAGGCAAGAGGTGCAT
CTCCATCACACTCATCGACACCAGCAGCAGCGGCCACAGCGGCGGCGGCG
CGGGAAAGGAAATTGCCATCACCAGGGCTGACAGCCGACGAAATTGTGCC
AGCAACGACGAGCGATGCTGTCGTCGGAGAAGCTAACGAAAAAGTTTCAT
CATCAAACGGTAACATATGCTTTACTTCGCCGGCAATCAACATTGCCGCC
TCCGCCTCCGCCGCCACTGCAGATCATACAGAAGAAATTCATCAACGATA
TTCAGATATCTGTGCCACGGAAAAGGCCGGGAAAAAAAAACGCAAGCGAC
GCAGCGAGACAGACACCGTTTCGGTCCAACGAAAGTCTCCCCGCAACGAT
GTAGCGTCGTCGCGGGAGGACGAAACGGCGTTGAGCAGAGACAGTCTGCG
GGGCAGCAACACTGACCCCGAGAGGACGGCACTGGAACGCGGGAAGAAAC
ATGGTGATGCTTGTTCGGGGAGTGATGGGTTGTCTGCACGGGAGAATGCG
TTGATGCGTGATAATACGCGACGAATTACCCCGACGTTGATTAAGCGACC
CCCCGGCGGCCCGTTTGGCGCCAGCAAAGCGCGAGCGTGGCATGCGCAGC
AGGTGGTGCAGTCTGCGGTAACGCCAATGCAGGCCATGCGTGCGGTGTTG
GACCGGCCTCTGCGGAGCAACTACGTCACCGTGTCCACGGCCATCAACAG
GGTAGCTAAGCTGTCGGCGGAGAGATCGCCCCCAGGGCTTCGAGGGGAAC
AAGAGCGGCAACATCTAGGTGTTTTGCTCAAGGCCATGCGTGCGGTGTTG
GACCGGCCTCTGCGGAGCAACTACGTCACCGTGTCCACGGCCATCAACAG
GGTAGCTAAGCTGTCGGCGGAGAGATCGCCCCCAGGGCTTCGAGGGGAAC
AAGAGCGGCAACATCTAGGTGTTTTGCTCAAG
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