mRNA_H-paniculata_contig33690.9006.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33690.9006.1
Unique NamemRNA_H-paniculata_contig33690.9006.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig33690.9006.1 vs. uniprot
Match: D7FV42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV42_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 9.710e-12
Identity = 57/177 (32.20%), Postives = 78/177 (44.07%), Query Frame = 2 
Query:   11 AMCHRQVGLLVHKHGKPYNAGVHFAFRQANTVEERRQLEAERANGGPDWQRYRKLSPDILK---GLFPTQGPPPAPPLQTADGMVVGAAASLGD-----AAGDGDSGDDGKPKLHNDAESPP------------------------------LYVAVQGWSHHRPNDSTIGFRPRGA 427
            A CHRQVGL++ + GK    G  FA R A T+E+ R +E ERA GG  W R+   + D L    G +P              G++VGA+   G      A G+   GD+G   L   A +PP                              L+VA+QGW+ H  +D  + F+PRGA
Sbjct:  538 ATCHRQVGLVMQR-GKSLRVGCRFALRVAETLEDERAIEKERAEGGVQWSRFEMPADDELDLDLGAYP--------------GLLVGASRPRGQEEQRSATGEAGGGDNGV-FLPGIAAAPPAAAGAEKAXXXXGDGXXXXXXXGSECDASSLFVALQGWAKHDVDDPEVRFQPRGA 698
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BLAST of mRNA_H-paniculata_contig33690.9006.1 vs. uniprot
Match: A0A6H5LHH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LHH7_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.160e-10
Identity = 49/161 (30.43%), Postives = 70/161 (43.48%), Query Frame = 2 
Query:   11 AMCHRQVGLLVHKHGKPYNAGVHFAFRQANTVEERRQLEAERANGGPDWQRYRKLSPDILK---GLFPTQGPPPAPPLQTADGMVVGAAASLG-------------------DAAGDGDSGDDGKPKLHNDAESPPLYVAVQGWSHHRPNDSTIGFRPRGA 427
            A CHRQVGL++ + GK    G  FA R A T+E+ R +E ERA GG  W R+   + D L    G +P       P  Q       G A                       +A      G+       ++ ++  L+VA+QGW+ H  +D  + F+PRGA
Sbjct:  461 ATCHRQVGLVLQR-GKSLRVGCRFALRVAETLEDERAIEKERAEGGVQWSRFEMPADDELDLDLGAYPGLLVGAKPRGQEEQRSATGEAGXXXXXXXXXXXXXXXXXXXGTEEAVSSSGDGNXXXXXXGSECDASSLFVALQGWTKHDVDDPEVRFQPRGA 620
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33690.9006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FV42_ECTSI9.710e-1232.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LHH7_9PHAE1.160e-1030.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33690contigH-paniculata_contig33690:278..1313 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue1.1e-10
Seed eggNOG ortholog2880.D7FV42
Preferred namePHF14
KEGG koko:K02606,ko:K11380,ko:K22156,ko:K22184
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
KEGG ModuleM00284
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006357,GO:0007154,GO:0007267,GO:0007275,GO:0008150,GO:0008285,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010464,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010640,GO:0010642,GO:0010646,GO:0010648,GO:0019219,GO:0019222,GO:0023051,GO:0023052,GO:0023057,GO:0030154,GO:0030323,GO:0030324,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032501,GO:0032502,GO:0035295,GO:0042127,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045165,GO:0045168,GO:0045892,GO:0045934,GO:0046331,GO:0048286,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051171,GO:0051172,GO:0051239,GO:0051241,GO:0051252,GO:0051253,GO:0060255,GO:0060541,GO:0065007,GO:0072201,GO:0080090,GO:1902679,GO:1903506,GO:1903507,GO:2000026,GO:2000112,GO:2000113,GO:2000583,GO:2000584,GO:2000790,GO:2000791,GO:2001141
EggNOG free text desc.negative regulation of platelet-derived growth factor receptor-alpha signaling pathway
EggNOG OGsCOG5141@1,KOG0954@2759,KOG0955@2759,KOG0957@2759
COG Functional cat.BQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03036
Exons2
Model size434
Cds size420
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33690.9006.1prot_H-paniculata_contig33690.9006.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33690 278..1300 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930039.1497798-CDS-H-paniculata_contig33690:277..6821622930039.1497798-CDS-H-paniculata_contig33690:277..682Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33690 278..682 -
1691481121.6364853-CDS-H-paniculata_contig33690:277..6821691481121.6364853-CDS-H-paniculata_contig33690:277..682Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33690 278..682 -
1622930039.168055-CDS-H-paniculata_contig33690:1285..13001622930039.168055-CDS-H-paniculata_contig33690:1285..1300Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33690 1286..1300 -
1691481121.6475224-CDS-H-paniculata_contig33690:1285..13001691481121.6475224-CDS-H-paniculata_contig33690:1285..1300Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33690 1286..1300 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930039.1829662-UTR-H-paniculata_contig33690:1300..13131622930039.1829662-UTR-H-paniculata_contig33690:1300..1313Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33690 1301..1313 -
1691481121.6554193-UTR-H-paniculata_contig33690:1300..13131691481121.6554193-UTR-H-paniculata_contig33690:1300..1313Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33690 1301..1313 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33690.9006.1

>prot_H-paniculata_contig33690.9006.1 ID=prot_H-paniculata_contig33690.9006.1|Name=mRNA_H-paniculata_contig33690.9006.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=140bp
MCHRQVGLLVHKHGKPYNAGVHFAFRQANTVEERRQLEAERANGGPDWQR
YRKLSPDILKGLFPTQGPPPAPPLQTADGMVVGAAASLGDAAGDGDSGDD
GKPKLHNDAESPPLYVAVQGWSHHRPNDSTIGFRPRGANG
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mRNA from alignment at H-paniculata_contig33690:278..1313-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33690.9006.1 ID=mRNA_H-paniculata_contig33690.9006.1|Name=mRNA_H-paniculata_contig33690.9006.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1036bp|location=Sequence derived from alignment at H-paniculata_contig33690:278..1313- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTAAGCCGGCGATGTGCCATCGCCAGGTGTGTGTTATATGGAACGGGG
AGGCGTGTTTTTCCGCTTGATCTTCTGGGAGCAAACAATCGAACCTTTTT
GCGTTCTACAGATTAATGTCAACGTTCAAGTATCCGTTTTACATTCTTTC
TCATCGTCAACATACGTACCAGAGAGCACTGTTGCCCACCCTGTTGCAAC
TCCAAACATGTAACCTGCACAAATACCGTAATTGACGCTGTTTCCGTTCA
TGGTTACGACGGTGTTCATGACACCGATAGCGGTATCATTGGGAGGATCT
CGTAGAGACCCACTGTTTTGGCAATGTCATTAGATAGGCCCCAGCTTCTC
GAGAAAATTCATATTTGAAGATATTATGGGGGGGTTCGAAAACATGGTCA
ATTACGATAGATACACATGCAATCTGCACACCTTTAGCCCCGATTTCTTT
ATCAAGCAACAGATCATACATTTCAATTAATACGCCACTTTTTGACCCTA
CCACCTGTTGTTGCCGCAAAAACAGGTGACTAATCCATCCGCGTGCCACA
AAAACAACTTATGTTCTCTCGTGATACCTTCACCGTCAAACCGCCTTTTT
GTTGTATATTCGTTCGTCATTATTCAAACAGGTGGGTCTCTTGGTTCACA
AGCATGGGAAGCCCTACAACGCGGGTGTACACTTCGCCTTCCGCCAGGCC
AATACGGTGGAAGAGCGACGACAATTGGAAGCTGAGAGGGCCAACGGCGG
CCCCGACTGGCAACGGTATCGAAAGCTGAGCCCGGATATCCTCAAGGGCT
TGTTCCCGACCCAGGGGCCACCCCCAGCGCCCCCGCTTCAAACCGCCGAT
GGGATGGTCGTGGGGGCGGCGGCGAGCTTGGGAGACGCGGCAGGGGATGG
GGATTCCGGTGATGACGGGAAGCCCAAGCTTCATAACGACGCCGAGTCTC
CACCGCTGTACGTCGCTGTACAAGGCTGGAGTCATCACCGTCCGAATGAC
TCTACCATAGGTTTTCGTCCCAGGGGGGCGAACGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig33690:278..1313-

>mRNA_H-paniculata_contig33690.9006.1 ID=mRNA_H-paniculata_contig33690.9006.1|Name=mRNA_H-paniculata_contig33690.9006.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at H-paniculata_contig33690:278..1313- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCCATCGCCAGATGTGCCATCGCCAGGTGGGTCTCTTGGTTCACAA
GCATGGGAAGCCCTACAACGCGGGTGTACACTTCGCCTTCCGCCAGGCCA
ATACGGTGGAAGAGCGACGACAATTGGAAGCTGAGAGGGCCAACGGCGGC
CCCGACTGGCAACGGTATCGAAAGCTGAGCCCGGATATCCTCAAGGGCTT
GTTCCCGACCCAGGGGCCACCCCCAGCGCCCCCGCTTCAAACCGCCGATG
GGATGGTCGTGGGGGCGGCGGCGAGCTTGGGAGACGCGGCAGGGGATGGG
GATTCCGGTGATGACGGGAAGCCCAAGCTTCATAACGACGCCGAGTCTCC
ACCGCTGTACGTCGCTGTACAAGGCTGGAGTCATCACCGTCCGAATGACT
CTACCATAGGTTTTCGTCCCAGGGGGGCGAACGGGGTGGGTCTCTTGGTT
CACAAGCATGGGAAGCCCTACAACGCGGGTGTACACTTCGCCTTCCGCCA
GGCCAATACGGTGGAAGAGCGACGACAATTGGAAGCTGAGAGGGCCAACG
GCGGCCCCGACTGGCAACGGTATCGAAAGCTGAGCCCGGATATCCTCAAG
GGCTTGTTCCCGACCCAGGGGCCACCCCCAGCGCCCCCGCTTCAAACCGC
CGATGGGATGGTCGTGGGGGCGGCGGCGAGCTTGGGAGACGCGGCAGGGG
ATGGGGATTCCGGTGATGACGGGAAGCCCAAGCTTCATAACGACGCCGAG
TCTCCACCGCTGTACGTCGCTGTACAAGGCTGGAGTCATCACCGTCCGAA
TGACTCTACCATAGGTTTTCGTCCCAGGGGGGCGAACGGG
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