mRNA_H-paniculata_contig3363.9000.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3363.9000.1
Unique NamemRNA_H-paniculata_contig3363.9000.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3363.9000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3363contigH-paniculata_contig3363:9317..9932 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size616
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3363.9000.1prot_H-paniculata_contig3363.9000.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3363 9433..9774 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930038.2881267-UTR-H-paniculata_contig3363:9316..94321622930038.2881267-UTR-H-paniculata_contig3363:9316..9432Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3363 9317..9432 +
1691481121.1474628-UTR-H-paniculata_contig3363:9316..94321691481121.1474628-UTR-H-paniculata_contig3363:9316..9432Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3363 9317..9432 +
1622930038.3206527-UTR-H-paniculata_contig3363:9774..99321622930038.3206527-UTR-H-paniculata_contig3363:9774..9932Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3363 9775..9932 +
1691481121.1703188-UTR-H-paniculata_contig3363:9774..99321691481121.1703188-UTR-H-paniculata_contig3363:9774..9932Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3363 9775..9932 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930038.3033717-CDS-H-paniculata_contig3363:9432..97741622930038.3033717-CDS-H-paniculata_contig3363:9432..9774Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3363 9433..9774 +
1691481121.157777-CDS-H-paniculata_contig3363:9432..97741691481121.157777-CDS-H-paniculata_contig3363:9432..9774Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3363 9433..9774 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3363.9000.1

>prot_H-paniculata_contig3363.9000.1 ID=prot_H-paniculata_contig3363.9000.1|Name=mRNA_H-paniculata_contig3363.9000.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp
MRGNGSDLRSSPPSLPSANPTDIFLPSINNNSNSPDPRVSRHRLGTNGVG
IFLCPSHHPNQTVPATEIYVWSPLDRFLSRTGNHANSDQEKRVARSSVIS
SAATSSPCTYLPV*
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mRNA from alignment at H-paniculata_contig3363:9317..9932+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3363.9000.1 ID=mRNA_H-paniculata_contig3363.9000.1|Name=mRNA_H-paniculata_contig3363.9000.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=616bp|location=Sequence derived from alignment at H-paniculata_contig3363:9317..9932+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGTTTGCTCCGCTGCCCCTACAAGTAGAAGTGTAGTAACAATCAGGCGG
GTTGCAATATCTGCAGCGAAGACGCAAGCGTCAAGATCGACTCTGGCACA
GCCCCTGAATATTCGTATGCGCGGCAACGGCTCAGATTTACGGTCGAGTC
CCCCGTCACTGCCGTCGGCCAACCCTACCGACATCTTCCTGCCCAGCATC
AACAACAACAGCAATAGTCCAGATCCGCGTGTTTCTCGCCACAGGCTCGG
CACGAACGGAGTGGGAATCTTTCTCTGCCCAAGCCACCACCCCAACCAAA
CGGTACCTGCAACAGAGATCTATGTGTGGTCACCACTTGACCGATTTTTG
TCAAGGACAGGGAACCACGCAAACTCTGACCAGGAGAAACGTGTCGCTCG
GAGCAGTGTGATATCCTCAGCAGCGACTTCGTCGCCGTGCACGTACTTGC
CCGTATAATTGCGGCTTCAAACAGTTAAACAGTTCGCCATTTTGATGCCT
CTAAGACGAAAGCAGCGTGACATACACCAAGACAAACAATTCAGATATAC
CTCACGCCCTCCCTCAAGCGTACTACATACGTCGAACATTCCATCTTGCC
CCTACGACATTTCATA
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Coding sequence (CDS) from alignment at H-paniculata_contig3363:9317..9932+

>mRNA_H-paniculata_contig3363.9000.1 ID=mRNA_H-paniculata_contig3363.9000.1|Name=mRNA_H-paniculata_contig3363.9000.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig3363:9317..9932+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCGGCAACGGCTCAGATTTACGGTCGAGTCCCCCGTCACTGCCGTC
GGCCAACCCTACCGACATCTTCCTGCCCAGCATCAACAACAACAGCAATA
GTCCAGATCCGCGTGTTTCTCGCCACAGGCTCGGCACGAACGGAGTGGGA
ATCTTTCTCTGCCCAAGCCACCACCCCAACCAAACGGTACCTGCAACAGA
GATCTATGTGTGGTCACCACTTGACCGATTTTTGTCAAGGACAGGGAACC
ACGCAAACTCTGACCAGGAGAAACGTGTCGCTCGGAGCAGTGTGATATCC
TCAGCAGCGACTTCGTCGCCGTGCACGTACTTGCCCGTATAAATGCGCGG
CAACGGCTCAGATTTACGGTCGAGTCCCCCGTCACTGCCGTCGGCCAACC
CTACCGACATCTTCCTGCCCAGCATCAACAACAACAGCAATAGTCCAGAT
CCGCGTGTTTCTCGCCACAGGCTCGGCACGAACGGAGTGGGAATCTTTCT
CTGCCCAAGCCACCACCCCAACCAAACGGTACCTGCAACAGAGATCTATG
TGTGGTCACCACTTGACCGATTTTTGTCAAGGACAGGGAACCACGCAAAC
TCTGACCAGGAGAAACGTGTCGCTCGGAGCAGTGTGATATCCTCAGCAGC
GACTTCGTCGCCGTGCACGTACTTGCCCGTATAA
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