mRNA_H-paniculata_contig3359.8992.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3359.8992.1
Unique NamemRNA_H-paniculata_contig3359.8992.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3359.8992.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3359contigH-paniculata_contig3359:5195..6084 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size349
Cds size348
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3359.8992.1prot_H-paniculata_contig3359.8992.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3359 5195..6084 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930037.238644-CDS-H-paniculata_contig3359:5194..52791622930037.238644-CDS-H-paniculata_contig3359:5194..5279Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3359 5195..5279 -
1691481120.6251628-CDS-H-paniculata_contig3359:5194..52791691481120.6251628-CDS-H-paniculata_contig3359:5194..5279Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3359 5195..5279 -
1622930037.2537782-CDS-H-paniculata_contig3359:5501..56391622930037.2537782-CDS-H-paniculata_contig3359:5501..5639Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3359 5502..5639 -
1691481120.6359663-CDS-H-paniculata_contig3359:5501..56391691481120.6359663-CDS-H-paniculata_contig3359:5501..5639Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3359 5502..5639 -
1622930037.267244-CDS-H-paniculata_contig3359:5959..60841622930037.267244-CDS-H-paniculata_contig3359:5959..6084Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3359 5960..6084 -
1691481120.6538641-CDS-H-paniculata_contig3359:5959..60841691481120.6538641-CDS-H-paniculata_contig3359:5959..6084Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3359 5960..6084 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3359.8992.1

>prot_H-paniculata_contig3359.8992.1 ID=prot_H-paniculata_contig3359.8992.1|Name=mRNA_H-paniculata_contig3359.8992.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
TTADPGVVDSNTITFVYLNRPEFQALRERPTQQALCLQVLARFRGFYNRN
AKKEDWAGIDQHASQAAEFFRGVEGLVPRGQWTKSLKSCVAKHCYEALTK
FETWVKPHLSNIKQEI
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mRNA from alignment at H-paniculata_contig3359:5195..6084-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3359.8992.1 ID=mRNA_H-paniculata_contig3359.8992.1|Name=mRNA_H-paniculata_contig3359.8992.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=890bp|location=Sequence derived from alignment at H-paniculata_contig3359:5195..6084- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAACCGCGGATCCCGGTGTGGTCGACAGCAACACTATCACTTTCGTATA
CCTCAACCGGCCCGAATTTCAAGCGCTACGAGAACGACCCACTCAGCAGG
CTTTGTGTCTTCAAGTTCTCGCAAGGTGAGGGTCGTTTACTGTAAGCTAA
CAGCAAATATTCTATATACGCTCATACTAGTATGATTTGTGAGCGCGAGG
TGAAGAAATAAACGTCAGAACAGCGATTGTTGCACCTTGGTTGCTTTCCT
GCCGATTGCTTCGCTGTTTTGGCTGGACATTCCGGGCACTATATGCTGCA
AAGGTCACTGAACGTTGTATCGGAACCCTCAACACATTTTTCCGGATTTG
TATACTGTTTACAAACCCTTCCTTGGAGTTTACTCGCACTCTCTTTCTCT
CGCTGGCCTCTCGCCTTCATAATTTGCAACTTGTTTATTGTCTAGGTTCA
GGGGATTTTACAATCGCAATGCTAAGAAGGAAGATTGGGCCGGGATCGAC
CAGCATGCCTCACAAGCAGCTGAGTTTTTCCGGGGCGTGGAAGGTCTTGT
CCCCCGAGGACAGTGGACAAAGAGCTTGAAATCGTGAGTGGACCTACAAA
GCTAATACTTGTCGGTGCATGTAAGTAAGCTTCTGTCGCCGTTCTCGTGC
ACAATGAATGTGCCGTCTGTTGCAAGGATTACAGCGTTAGATACCTGAAT
TTGACCCTTTTGTACGACAGCATCCCTCCATTGTGTTGGCGCCCTGGCGC
CGGTTTACCAACTTAATTTAGATTTCTGCACCTGTCCTTTTTGCTCTAAC
GACAGTTGTGTGGCGAAGCACTGTTACGAGGCTCTGACCAAATTCGAGAC
CTGGGTCAAGCCTCACCTCAGCAACATAAAACAAGAAATA
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Coding sequence (CDS) from alignment at H-paniculata_contig3359:5195..6084-

>mRNA_H-paniculata_contig3359.8992.1 ID=mRNA_H-paniculata_contig3359.8992.1|Name=mRNA_H-paniculata_contig3359.8992.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig3359:5195..6084- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAACCGCGGATCCCGGTGTGGTCGACAGCAACACTATCACTTTCGTATA
CCTCAACCGGCCCGAATTTCAAGCGCTACGAGAACGACCCACTCAGCAGG
CTTTGTGTCTTCAAGTTCTCGCAAGACAACCGCGGATCCCGGTGTGGTCG
ACAGCAACACTATCACTTTCGTATACCTCAACCGGCCCGAATTTCAAGCG
CTACGAGAACGACCCACTCAGCAGGCTTTGTGTCTTCAAGTTCTCGCAAG
GTTCAGGGGATTTTACAATCGCAATGCTAAGAAGGAAGATTGGGCCGGGA
TCGACCAGCATGCCTCACAAGCAGCTGAGTTTTTCCGGGGCGTGGAAGGT
CTTGTCCCCCGAGGACAGTGGACAAAGAGCTTGAAATCGTTCAGGGGATT
TTACAATCGCAATGCTAAGAAGGAAGATTGGGCCGGGATCGACCAGCATG
CCTCACAAGCAGCTGAGTTTTTCCGGGGCGTGGAAGGTCTTGTCCCCCGA
GGACAGTGGACAAAGAGCTTGAAATCTTGTGTGGCGAAGCACTGTTACGA
GGCTCTGACCAAATTCGAGACCTGGGTCAAGCCTCACCTCAGCAACATAA
AACAAGAAATATTGTGTGGCGAAGCACTGTTACGAGGCTCTGACCAAATT
CGAGACCTGGGTCAAGCCTCACCTCAGCAACATAAAACAAGAAATA
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